data_X1F # _chem_comp.id X1F _chem_comp.name "5-acetamido-7,9-di-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-18 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X1F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UM0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X1F C4 C1 C 0 1 N N S N N N 15.874 19.894 52.069 3.226 0.047 -0.068 C4 X1F 1 X1F C5 C2 C 0 1 N N R N N N 16.927 18.943 51.647 1.869 -0.663 -0.043 C5 X1F 2 X1F C6 C3 C 0 1 N N R N N N 18.268 19.393 52.222 0.765 0.369 0.203 C6 X1F 3 X1F C11 C4 C 0 1 N N N N N N 16.271 16.531 49.977 2.341 -3.915 1.922 C11 X1F 4 X1F C7 C5 C 0 1 N N R N N N 19.381 18.597 51.770 -0.598 -0.324 0.170 C7 X1F 5 X1F C8 C6 C 0 1 N N R N N N 20.550 18.627 52.801 -1.706 0.724 0.291 C8 X1F 6 X1F C9 C7 C 0 1 N N N N N N 21.646 17.647 52.391 -3.070 0.031 0.258 C9 X1F 7 X1F C10 C8 C 0 1 N N N N N N 16.704 17.854 49.322 2.353 -2.892 0.815 C10 X1F 8 X1F C3 C9 C 0 1 N N N N N N 15.770 20.072 53.512 3.199 1.137 -1.144 C3 X1F 9 X1F C1 C10 C 0 1 N N N N N N 16.904 20.284 55.633 2.272 2.775 0.472 C1 X1F 10 X1F C2 C11 C 0 1 N N R N N N 16.819 19.470 54.338 2.044 2.100 -0.856 C2 X1F 11 X1F CAF C12 C 0 1 N N N N N N 23.663 16.010 51.472 -6.532 1.567 0.219 CAF X1F 12 X1F CAG C13 C 0 1 N N N N N N 23.207 17.235 50.664 -5.387 0.586 0.225 CAG X1F 13 X1F CAH C14 C 0 1 N N N N N N 18.481 14.832 51.754 -1.708 -2.944 -2.330 CAH X1F 14 X1F CAI C15 C 0 1 N N N N N N 18.764 16.258 52.248 -1.509 -2.147 -1.067 CAI X1F 15 X1F N5 N1 N 0 1 N N N N N N 17.019 19.018 50.152 1.857 -1.658 1.033 N5 X1F 16 X1F O10 O1 O 0 1 N N N N N N 16.783 17.933 48.147 2.810 -3.179 -0.271 O10 X1F 17 X1F O1A O2 O 0 1 N N N N N N 18.015 20.732 56.019 2.278 3.981 0.544 O1A X1F 18 X1F O1B O3 O 0 1 N N N N N N 15.866 20.509 56.310 2.468 2.036 1.575 O1B X1F 19 X1F O3 O4 O 0 1 N N N N N N 16.439 18.153 54.652 1.978 3.087 -1.887 O3 X1F 20 X1F O4 O5 O 0 1 N N N N N N 14.571 19.454 51.534 4.256 -0.896 -0.369 O4 X1F 21 X1F O6 O6 O 0 1 N N N N N N 18.182 19.430 53.748 0.816 1.370 -0.816 O6 X1F 22 X1F O7 O7 O 0 1 N N N N N N 19.020 17.279 51.308 -0.746 -1.042 -1.083 O7 X1F 23 X1F O8 O8 O 0 1 N N N N N N 21.076 19.902 52.843 -1.561 1.431 1.524 O8 X1F 24 X1F O9 O9 O 0 1 N N N N N N 22.234 18.115 51.203 -4.122 1.032 0.253 O9 X1F 25 X1F OBJ O10 O 0 1 N N N N N N 23.667 17.446 49.589 -5.609 -0.601 0.205 OBJ X1F 26 X1F OBK O11 O 0 1 N N N N N N 18.762 16.473 53.410 -2.035 -2.502 -0.039 OBK X1F 27 X1F H1 H1 H 0 1 N N N N N N 16.107 20.872 51.622 3.418 0.500 0.905 H1 X1F 28 X1F H2 H2 H 0 1 N N N N N N 16.692 17.919 51.974 1.699 -1.158 -0.999 H2 X1F 29 X1F H3 H3 H 0 1 N N N N N N 18.431 20.427 51.885 0.913 0.834 1.178 H3 X1F 30 X1F H4 H4 H 0 1 N N N N N N 16.079 15.780 49.196 1.411 -4.481 1.883 H4 X1F 31 X1F H5 H5 H 0 1 N N N N N N 17.071 16.172 50.642 3.185 -4.594 1.798 H5 X1F 32 X1F H6 H6 H 0 1 N N N N N N 15.354 16.694 50.562 2.420 -3.410 2.884 H6 X1F 33 X1F H7 H7 H 0 1 N N N N N N 19.780 19.120 50.889 -0.669 -1.026 1.001 H7 X1F 34 X1F H8 H8 H 0 1 N N N N N N 20.156 18.330 53.784 -1.635 1.426 -0.540 H8 X1F 35 X1F H9 H9 H 0 1 N N N N N N 21.211 16.651 52.223 -3.145 -0.579 -0.642 H9 X1F 36 X1F H10 H10 H 0 1 N N N N N N 22.406 17.586 53.184 -3.176 -0.604 1.138 H10 X1F 37 X1F H11 H11 H 0 1 N N N N N N 15.770 21.153 53.713 4.141 1.684 -1.132 H11 X1F 38 X1F H12 H12 H 0 1 N N N N N N 14.810 19.640 53.830 3.056 0.679 -2.123 H12 X1F 39 X1F H13 H13 H 0 1 N N N N N N 24.415 15.450 50.897 -6.139 2.583 0.240 H13 X1F 40 X1F H14 H14 H 0 1 N N N N N N 24.102 16.342 52.424 -7.126 1.425 -0.684 H14 X1F 41 X1F H15 H15 H 0 1 N N N N N N 22.798 15.361 51.674 -7.157 1.401 1.096 H15 X1F 42 X1F H16 H16 H 0 1 N N N N N N 18.305 14.173 52.617 -2.582 -2.569 -2.862 H16 X1F 43 X1F H17 H17 H 0 1 N N N N N N 17.590 14.838 51.109 -0.827 -2.846 -2.964 H17 X1F 44 X1F H18 H18 H 0 1 N N N N N N 19.345 14.464 51.182 -1.859 -3.993 -2.077 H18 X1F 45 X1F H19 H19 H 0 1 N N N N N N 17.299 19.874 49.717 1.492 -1.428 1.902 H19 X1F 46 X1F H20 H20 H 0 1 N N N N N N 16.092 21.026 57.075 2.610 2.513 2.404 H20 X1F 47 X1F H21 H21 H 0 1 N N N N N N 17.111 17.749 55.188 1.267 3.732 -1.769 H21 X1F 48 X1F H22 H22 H 0 1 N N N N N N 13.895 20.064 51.805 5.142 -0.512 -0.407 H22 X1F 49 X1F H23 H23 H 0 1 N N N N N N 21.790 19.930 53.469 -1.614 0.868 2.309 H23 X1F 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X1F O10 C10 DOUB N N 1 X1F C10 C11 SING N N 2 X1F C10 N5 SING N N 3 X1F OBJ CAG DOUB N N 4 X1F N5 C5 SING N N 5 X1F CAG O9 SING N N 6 X1F CAG CAF SING N N 7 X1F O9 C9 SING N N 8 X1F O7 C7 SING N N 9 X1F O7 CAI SING N N 10 X1F O4 C4 SING N N 11 X1F C5 C4 SING N N 12 X1F C5 C6 SING N N 13 X1F CAH CAI SING N N 14 X1F C7 C6 SING N N 15 X1F C7 C8 SING N N 16 X1F C4 C3 SING N N 17 X1F C6 O6 SING N N 18 X1F CAI OBK DOUB N N 19 X1F C9 C8 SING N N 20 X1F C8 O8 SING N N 21 X1F C3 C2 SING N N 22 X1F O6 C2 SING N N 23 X1F C2 O3 SING N N 24 X1F C2 C1 SING N N 25 X1F C1 O1A DOUB N N 26 X1F C1 O1B SING N N 27 X1F C4 H1 SING N N 28 X1F C5 H2 SING N N 29 X1F C6 H3 SING N N 30 X1F C11 H4 SING N N 31 X1F C11 H5 SING N N 32 X1F C11 H6 SING N N 33 X1F C7 H7 SING N N 34 X1F C8 H8 SING N N 35 X1F C9 H9 SING N N 36 X1F C9 H10 SING N N 37 X1F C3 H11 SING N N 38 X1F C3 H12 SING N N 39 X1F CAF H13 SING N N 40 X1F CAF H14 SING N N 41 X1F CAF H15 SING N N 42 X1F CAH H16 SING N N 43 X1F CAH H17 SING N N 44 X1F CAH H18 SING N N 45 X1F N5 H19 SING N N 46 X1F O1B H20 SING N N 47 X1F O3 H21 SING N N 48 X1F O4 H22 SING N N 49 X1F O8 H23 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X1F SMILES ACDLabs 12.01 "OC(=O)C1(O)CC(O)C(NC(C)=O)C(O1)C(OC(C)=O)C(O)COC(C)=O" X1F InChI InChI 1.06 "InChI=1S/C15H23NO11/c1-6(17)16-11-9(20)4-15(24,14(22)23)27-13(11)12(26-8(3)19)10(21)5-25-7(2)18/h9-13,20-21,24H,4-5H2,1-3H3,(H,16,17)(H,22,23)/t9-,10+,11+,12+,13+,15+/m0/s1" X1F InChIKey InChI 1.06 NIHNZVQGPXTJRU-FSTWUICMSA-N X1F SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](OC(C)=O)[C@H](O)COC(C)=O)C(O)=O" X1F SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](OC(C)=O)[CH](O)COC(C)=O)C(O)=O" X1F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](COC(=O)C)O)OC(=O)C)(C(=O)O)O)O" X1F SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(CC(OC1C(C(COC(=O)C)O)OC(=O)C)(C(=O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X1F "SYSTEMATIC NAME" ACDLabs 12.01 "5-acetamido-7,9-di-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" X1F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-1,3-diacetyloxy-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X1F "Create component" 2023-10-18 RCSB X1F "Initial release" 2024-09-04 RCSB #