data_X1V # _chem_comp.id X1V _chem_comp.name "5-chloranyl-N-[[(4S,15R)-2,5,13,16-tetrakis(oxidanylidene)-15-propan-2-yl-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H32 Cl N5 O5 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "macrocycle X1vE; 5-chloro-N-[[(4S,15R)-15-isopropyl-2,5,13,16-tetraoxo-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-26 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 626.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X1V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z48 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X1V C01 C1 C 0 1 Y N N 34.097 -0.454 63.714 1.630 1.859 -1.520 C01 X1V 1 X1V C02 C2 C 0 1 N N N 32.701 -0.075 64.172 1.739 0.420 -1.842 C02 X1V 2 X1V O03 O1 O 0 1 N N N 32.395 0.005 65.255 2.632 0.009 -2.557 O03 X1V 3 X1V N04 N1 N 0 1 N N N 31.729 0.166 63.204 0.813 -0.438 -1.316 N04 X1V 4 X1V C05 C3 C 0 1 N N S 30.374 0.468 63.487 1.012 -1.863 -1.667 C05 X1V 5 X1V C06 C4 C 0 1 N N N 30.042 1.943 63.567 1.743 -2.576 -0.528 C06 X1V 6 X1V N07 N2 N 0 1 N N N 29.862 2.442 62.261 2.991 -1.870 -0.231 N07 X1V 7 X1V C08 C5 C 0 1 N N N 28.615 2.455 61.614 3.805 -2.321 0.744 C08 X1V 8 X1V O09 O2 O 0 1 N N N 27.685 2.017 62.106 3.503 -3.315 1.378 O09 X1V 9 X1V C10 C6 C 0 1 Y N N 28.659 2.977 60.200 5.054 -1.615 1.041 C10 X1V 10 X1V C11 C7 C 0 1 Y N N 29.643 3.946 59.829 5.958 -1.973 2.001 C11 X1V 11 X1V C12 C8 C 0 1 Y N N 29.465 4.216 58.331 7.044 -1.134 2.066 C12 X1V 12 X1V C13 C9 C 0 1 Y N N 28.406 3.366 57.865 7.032 -0.122 1.188 C13 X1V 13 X1V CL1 CL1 CL 0 0 N N N 27.985 3.444 56.189 8.278 1.080 1.055 CL1 X1V 14 X1V S15 S1 S 0 1 Y N N 27.722 2.433 59.005 5.633 -0.176 0.213 S15 X1V 15 X1V C16 C10 C 0 1 N N N 29.521 -0.345 62.508 -0.339 -2.499 -1.878 C16 X1V 16 X1V O17 O3 O 0 1 N N N 29.896 -0.612 61.488 -1.120 -2.030 -2.679 O17 X1V 17 X1V N18 N3 N 0 1 N N N 28.203 -0.769 62.845 -0.670 -3.606 -1.158 N18 X1V 18 X1V C19 C11 C 0 1 N N N 27.392 -1.504 61.961 -1.991 -4.208 -1.434 C19 X1V 19 X1V C20 C12 C 0 1 N N N 27.857 -2.939 61.749 -2.838 -4.141 -0.162 C20 X1V 20 X1V S21 S2 S 0 1 N N N 27.264 -4.011 63.045 -4.439 -3.376 -0.539 S21 X1V 21 X1V S22 S3 S 0 1 N N N 27.567 -6.030 62.756 -5.253 -3.067 1.317 S22 X1V 22 X1V C23 C13 C 0 1 N N N 29.186 -6.426 63.391 -6.099 -1.473 1.134 C23 X1V 23 X1V C24 C14 C 0 1 N N N 30.157 -6.868 62.305 -5.559 -0.488 2.173 C24 X1V 24 X1V C25 C15 C 0 1 N N N 30.921 -5.740 61.621 -5.415 0.873 1.542 C25 X1V 25 X1V O26 O4 O 0 1 N N N 30.736 -4.658 61.870 -6.354 1.390 0.977 O26 X1V 26 X1V N27 N4 N 0 1 N N N 31.893 -6.044 60.665 -4.216 1.515 1.616 N27 X1V 27 X1V C28 C16 C 0 1 N N R 32.616 -4.969 60.059 -4.105 2.780 0.862 C28 X1V 28 X1V C29 C17 C 0 1 N N N 33.130 -5.350 58.685 -4.208 2.493 -0.637 C29 X1V 29 X1V C30 C18 C 0 1 N N N 32.052 -5.772 57.736 -5.584 1.902 -0.950 C30 X1V 30 X1V C31 C19 C 0 1 N N N 34.093 -6.486 58.867 -4.021 3.794 -1.419 C31 X1V 31 X1V C32 C20 C 0 1 N N N 33.756 -4.374 60.886 -2.773 3.417 1.163 C32 X1V 32 X1V O33 O5 O 0 1 N N N 34.094 -4.842 61.852 -2.533 3.858 2.267 O33 X1V 33 X1V N34 N5 N 0 1 N N N 34.486 -3.265 60.441 -1.841 3.488 0.164 N34 X1V 34 X1V C35 C21 C 0 1 N N N 35.606 -2.785 61.191 -0.571 4.153 0.535 C35 X1V 35 X1V C36 C22 C 0 1 Y N N 35.424 -1.753 62.268 0.520 3.657 -0.379 C36 X1V 36 X1V C37 C23 C 0 1 Y N N 36.562 -1.212 62.812 1.428 4.552 -0.917 C37 X1V 37 X1V C38 C24 C 0 1 Y N N 36.460 -0.288 63.797 2.437 4.108 -1.752 C38 X1V 38 X1V C39 C25 C 0 1 Y N N 35.224 0.093 64.229 2.543 2.767 -2.056 C39 X1V 39 X1V C40 C26 C 0 1 Y N N 34.207 -1.387 62.735 0.616 2.313 -0.674 C40 X1V 40 X1V H1 H1 H 0 1 N N N 32.006 0.123 62.244 0.082 -0.136 -0.755 H1 X1V 41 X1V H2 H2 H 0 1 N N N 30.155 0.057 64.483 1.601 -1.937 -2.582 H2 X1V 42 X1V H3 H3 H 0 1 N N N 30.867 2.481 64.057 1.110 -2.585 0.360 H3 X1V 43 X1V H4 H4 H 0 1 N N N 29.117 2.082 64.146 1.966 -3.601 -0.824 H4 X1V 44 X1V H5 H5 H 0 1 N N N 30.657 2.803 61.773 3.233 -1.078 -0.736 H5 X1V 45 X1V H6 H6 H 0 1 N N N 30.373 4.401 60.481 5.831 -2.830 2.646 H6 X1V 46 X1V H7 H7 H 0 1 N N N 30.032 4.917 57.736 7.848 -1.280 2.772 H7 X1V 47 X1V H8 H8 H 0 1 N N N 27.840 -0.535 63.747 -0.068 -3.981 -0.496 H8 X1V 48 X1V H9 H9 H 0 1 N N N 27.389 -0.993 60.987 -2.485 -3.654 -2.232 H9 X1V 49 X1V H10 H10 H 0 1 N N N 26.370 -1.527 62.366 -1.863 -5.247 -1.736 H10 X1V 50 X1V H11 H11 H 0 1 N N N 27.475 -3.300 60.783 -2.998 -5.148 0.222 H11 X1V 51 X1V H12 H12 H 0 1 N N N 28.957 -2.962 61.740 -2.319 -3.545 0.589 H12 X1V 52 X1V H13 H13 H 0 1 N N N 29.086 -7.240 64.124 -5.921 -1.080 0.133 H13 X1V 53 X1V H14 H14 H 0 1 N N N 29.596 -5.534 63.887 -7.169 -1.611 1.285 H14 X1V 54 X1V H15 H15 H 0 1 N N N 29.585 -7.407 61.536 -6.252 -0.428 3.012 H15 X1V 55 X1V H16 H16 H 0 1 N N N 30.891 -7.549 62.761 -4.587 -0.829 2.528 H16 X1V 56 X1V H17 H17 H 0 1 N N N 32.079 -6.993 60.410 -3.477 1.161 2.134 H17 X1V 57 X1V H18 H18 H 0 1 N N N 31.900 -4.149 59.899 -4.907 3.454 1.161 H18 X1V 58 X1V H19 H19 H 0 1 N N N 33.667 -4.491 58.257 -3.433 1.782 -0.925 H19 X1V 59 X1V H20 H20 H 0 1 N N N 31.341 -4.944 57.597 -5.752 1.923 -2.027 H20 X1V 60 X1V H21 H21 H 0 1 N N N 32.500 -6.037 56.767 -5.627 0.872 -0.596 H21 X1V 61 X1V H22 H22 H 0 1 N N N 31.523 -6.645 58.147 -6.354 2.490 -0.451 H22 X1V 62 X1V H23 H23 H 0 1 N N N 34.889 -6.184 59.563 -3.115 4.296 -1.079 H23 X1V 63 X1V H24 H24 H 0 1 N N N 33.559 -7.357 59.275 -3.934 3.570 -2.483 H24 X1V 64 X1V H25 H25 H 0 1 N N N 34.536 -6.750 57.896 -4.881 4.444 -1.254 H25 X1V 65 X1V H26 H26 H 0 1 N N N 34.223 -2.805 59.593 -2.001 3.128 -0.723 H26 X1V 66 X1V H27 H27 H 0 1 N N N 36.062 -3.663 61.672 -0.678 5.232 0.424 H27 X1V 67 X1V H28 H28 H 0 1 N N N 36.312 -2.358 60.463 -0.320 3.912 1.568 H28 X1V 68 X1V H29 H29 H 0 1 N N N 37.534 -1.521 62.457 1.347 5.604 -0.684 H29 X1V 69 X1V H30 H30 H 0 1 N N N 37.348 0.142 64.236 3.143 4.813 -2.167 H30 X1V 70 X1V H31 H31 H 0 1 N N N 35.142 0.847 64.998 3.331 2.420 -2.708 H31 X1V 71 X1V H32 H32 H 0 1 N N N 33.317 -1.841 62.325 -0.093 1.614 -0.255 H32 X1V 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X1V CL1 C13 SING N N 1 X1V C30 C29 SING N N 2 X1V C13 C12 DOUB Y N 3 X1V C13 S15 SING Y N 4 X1V C12 C11 SING Y N 5 X1V C29 C31 SING N N 6 X1V C29 C28 SING N N 7 X1V S15 C10 SING Y N 8 X1V C11 C10 DOUB Y N 9 X1V C28 N27 SING N N 10 X1V C28 C32 SING N N 11 X1V C10 C08 SING N N 12 X1V N34 C32 SING N N 13 X1V N34 C35 SING N N 14 X1V N27 C25 SING N N 15 X1V C32 O33 DOUB N N 16 X1V C35 C36 SING N N 17 X1V O17 C16 DOUB N N 18 X1V C08 O09 DOUB N N 19 X1V C08 N07 SING N N 20 X1V C25 O26 DOUB N N 21 X1V C25 C24 SING N N 22 X1V C20 C19 SING N N 23 X1V C20 S21 SING N N 24 X1V C19 N18 SING N N 25 X1V N07 C06 SING N N 26 X1V C36 C40 DOUB Y N 27 X1V C36 C37 SING Y N 28 X1V C24 C23 SING N N 29 X1V C16 N18 SING N N 30 X1V C16 C05 SING N N 31 X1V C40 C01 SING Y N 32 X1V S22 S21 SING N N 33 X1V S22 C23 SING N N 34 X1V C37 C38 DOUB Y N 35 X1V N04 C05 SING N N 36 X1V N04 C02 SING N N 37 X1V C05 C06 SING N N 38 X1V C01 C02 SING N N 39 X1V C01 C39 DOUB Y N 40 X1V C38 C39 SING Y N 41 X1V C02 O03 DOUB N N 42 X1V N04 H1 SING N N 43 X1V C05 H2 SING N N 44 X1V C06 H3 SING N N 45 X1V C06 H4 SING N N 46 X1V N07 H5 SING N N 47 X1V C11 H6 SING N N 48 X1V C12 H7 SING N N 49 X1V N18 H8 SING N N 50 X1V C19 H9 SING N N 51 X1V C19 H10 SING N N 52 X1V C20 H11 SING N N 53 X1V C20 H12 SING N N 54 X1V C23 H13 SING N N 55 X1V C23 H14 SING N N 56 X1V C24 H15 SING N N 57 X1V C24 H16 SING N N 58 X1V N27 H17 SING N N 59 X1V C28 H18 SING N N 60 X1V C29 H19 SING N N 61 X1V C30 H20 SING N N 62 X1V C30 H21 SING N N 63 X1V C30 H22 SING N N 64 X1V C31 H23 SING N N 65 X1V C31 H24 SING N N 66 X1V C31 H25 SING N N 67 X1V N34 H26 SING N N 68 X1V C35 H27 SING N N 69 X1V C35 H28 SING N N 70 X1V C37 H29 SING N N 71 X1V C38 H30 SING N N 72 X1V C39 H31 SING N N 73 X1V C40 H32 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X1V InChI InChI 1.03 "InChI=1S/C26H32ClN5O5S3/c1-15(2)22-26(37)29-13-16-4-3-5-17(12-16)23(34)31-18(14-30-25(36)19-6-7-20(27)40-19)24(35)28-9-11-39-38-10-8-21(33)32-22/h3-7,12,15,18,22H,8-11,13-14H2,1-2H3,(H,28,35)(H,29,37)(H,30,36)(H,31,34)(H,32,33)/t18-,22+/m0/s1" X1V InChIKey InChI 1.03 YNRUDSNJNOWNHB-PGRDOPGGSA-N X1V SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H]1NC(=O)CCSSCCNC(=O)[C@H](CNC(=O)c2sc(Cl)cc2)NC(=O)c3cccc(CNC1=O)c3" X1V SMILES CACTVS 3.385 "CC(C)[CH]1NC(=O)CCSSCCNC(=O)[CH](CNC(=O)c2sc(Cl)cc2)NC(=O)c3cccc(CNC1=O)c3" X1V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H]1C(=O)NCc2cccc(c2)C(=O)N[C@H](C(=O)NCCSSCCC(=O)N1)CNC(=O)c3ccc(s3)Cl" X1V SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1C(=O)NCc2cccc(c2)C(=O)NC(C(=O)NCCSSCCC(=O)N1)CNC(=O)c3ccc(s3)Cl" # _pdbx_chem_comp_identifier.comp_id X1V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-chloranyl-~{N}-[[(4~{S},15~{R})-2,5,13,16-tetrakis(oxidanylidene)-15-propan-2-yl-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 X1V "macrocycle X1vE" AUTHOR ? 2 X1V "5-chloro-N-[[(4S,15R)-15-isopropyl-2,5,13,16-tetraoxo-9,10-dithia-3,6,14,17-tetrazabicyclo[17.3.1]tricosa-1(22),19(23),20-trien-4-yl]methyl]thiophene-2-carboxamide" PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X1V "Create component" 2020-05-26 PDBE X1V "Modify synonyms" 2021-08-28 PDBE X1V "Initial release" 2022-06-01 RCSB ##