data_X1Y # _chem_comp.id X1Y _chem_comp.name "(2R,4R)-1-cyclohexylhexahydropyrimidine-2,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-23 _chem_comp.pdbx_modified_date 2020-12-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 200.278 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X1Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KS5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X1Y N1 N1 N 0 1 N N N -22.777 3.324 28.739 -0.236 -0.008 0.490 N1 X1Y 1 X1Y C4 C1 C 0 1 N N N -23.565 2.606 29.516 1.199 0.277 0.359 C4 X1Y 2 X1Y C5 C2 C 0 1 N N N -23.056 2.510 31.007 2.000 -0.774 1.130 C5 X1Y 3 X1Y C6 C3 C 0 1 N N N -24.051 1.761 31.894 3.495 -0.477 0.993 C6 X1Y 4 X1Y C7 C4 C 0 1 N N N -25.509 2.320 31.792 3.889 -0.518 -0.485 C7 X1Y 5 X1Y C8 C5 C 0 1 N N N -25.996 2.476 30.308 3.088 0.533 -1.256 C8 X1Y 6 X1Y C10 C6 C 0 1 N N R -21.352 3.303 28.981 -1.044 1.092 -0.054 C10 X1Y 7 X1Y C1 C7 C 0 1 N N R -21.116 4.461 26.915 -2.899 -0.411 -0.457 C1 X1Y 8 X1Y C2 C8 C 0 1 N N N -22.301 3.828 26.398 -2.066 -1.579 0.077 C2 X1Y 9 X1Y C3 C9 C 0 1 N N N -23.301 3.579 27.470 -0.581 -1.283 -0.154 C3 X1Y 10 X1Y C9 C10 C 0 1 N N N -24.986 3.246 29.459 1.593 0.236 -1.119 C9 X1Y 11 X1Y N2 N2 N 0 1 N N N -20.493 3.598 27.799 -2.467 0.831 0.199 N2 X1Y 12 X1Y O1 O1 O 0 1 N N N -21.516 5.704 27.638 -4.281 -0.643 -0.176 O1 X1Y 13 X1Y O2 O2 O 0 1 N N N -21.010 4.234 29.967 -0.665 2.317 0.577 O2 X1Y 14 X1Y H2 H2 H 0 1 N N N -23.653 1.577 29.136 1.411 1.266 0.765 H2 X1Y 15 X1Y H3 H3 H 0 1 N N N -22.093 1.978 31.022 1.719 -0.745 2.182 H3 X1Y 16 X1Y H4 H4 H 0 1 N N N -22.919 3.527 31.404 1.787 -1.763 0.724 H4 X1Y 17 X1Y H5 H5 H 0 1 N N N -24.060 0.703 31.593 3.707 0.512 1.399 H5 X1Y 18 X1Y H6 H6 H 0 1 N N N -23.718 1.842 32.939 4.066 -1.226 1.542 H6 X1Y 19 X1Y H7 H7 H 0 1 N N N -25.543 3.306 32.279 4.954 -0.306 -0.582 H7 X1Y 20 X1Y H8 H8 H 0 1 N N N -26.188 1.630 32.314 3.677 -1.507 -0.891 H8 X1Y 21 X1Y H9 H9 H 0 1 N N N -26.953 3.018 30.302 3.301 1.522 -0.850 H9 X1Y 22 X1Y H10 H10 H 0 1 N N N -26.138 1.476 29.873 3.369 0.504 -2.309 H10 X1Y 23 X1Y H11 H11 H 0 1 N N N -21.084 2.298 29.340 -0.874 1.169 -1.128 H11 X1Y 24 X1Y H12 H12 H 0 1 N N N -20.441 4.726 26.088 -2.756 -0.323 -1.534 H12 X1Y 25 X1Y H13 H13 H 0 1 N N N -22.750 4.481 25.635 -2.251 -1.701 1.145 H13 X1Y 26 X1Y H14 H14 H 0 1 N N N -22.022 2.868 25.940 -2.342 -2.494 -0.448 H14 X1Y 27 X1Y H15 H15 H 0 1 N N N -23.947 4.467 27.543 -0.386 -1.215 -1.224 H15 X1Y 28 X1Y H16 H16 H 0 1 N N N -23.906 2.709 27.173 0.021 -2.083 0.276 H16 X1Y 29 X1Y H17 H17 H 0 1 N N N -24.925 4.280 29.830 1.381 -0.753 -1.525 H17 X1Y 30 X1Y H18 H18 H 0 1 N N N -25.331 3.251 28.415 1.022 0.985 -1.668 H18 X1Y 31 X1Y H19 H19 H 0 1 N N N -20.288 2.741 27.325 -3.035 1.612 -0.094 H19 X1Y 32 X1Y H21 H21 H 0 1 N N N -20.742 6.132 27.985 -4.869 0.061 -0.484 H21 X1Y 33 X1Y H22 H22 H 0 1 N N N -21.537 4.082 30.743 -1.158 3.088 0.266 H22 X1Y 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X1Y C2 C1 SING N N 1 X1Y C2 C3 SING N N 2 X1Y C1 O1 SING N N 3 X1Y C1 N2 SING N N 4 X1Y C3 N1 SING N N 5 X1Y N2 C10 SING N N 6 X1Y N1 C10 SING N N 7 X1Y N1 C4 SING N N 8 X1Y C10 O2 SING N N 9 X1Y C9 C4 SING N N 10 X1Y C9 C8 SING N N 11 X1Y C4 C5 SING N N 12 X1Y C8 C7 SING N N 13 X1Y C5 C6 SING N N 14 X1Y C7 C6 SING N N 15 X1Y C4 H2 SING N N 16 X1Y C5 H3 SING N N 17 X1Y C5 H4 SING N N 18 X1Y C6 H5 SING N N 19 X1Y C6 H6 SING N N 20 X1Y C7 H7 SING N N 21 X1Y C7 H8 SING N N 22 X1Y C8 H9 SING N N 23 X1Y C8 H10 SING N N 24 X1Y C10 H11 SING N N 25 X1Y C1 H12 SING N N 26 X1Y C2 H13 SING N N 27 X1Y C2 H14 SING N N 28 X1Y C3 H15 SING N N 29 X1Y C3 H16 SING N N 30 X1Y C9 H17 SING N N 31 X1Y C9 H18 SING N N 32 X1Y N2 H19 SING N N 33 X1Y O1 H21 SING N N 34 X1Y O2 H22 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X1Y SMILES ACDLabs 12.01 "N1(C(O)NC(O)CC1)C2CCCCC2" X1Y InChI InChI 1.03 "InChI=1S/C10H20N2O2/c13-9-6-7-12(10(14)11-9)8-4-2-1-3-5-8/h8-11,13-14H,1-7H2/t9-,10-/m1/s1" X1Y InChIKey InChI 1.03 QJXOGSBPPLHAFK-NXEZZACHSA-N X1Y SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CCN(C2CCCCC2)[C@H](O)N1" X1Y SMILES CACTVS 3.385 "O[CH]1CCN(C2CCCCC2)[CH](O)N1" X1Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)N2CC[C@H](N[C@H]2O)O" X1Y SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)N2CCC(NC2O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X1Y "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4R)-1-cyclohexylhexahydropyrimidine-2,4-diol" X1Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{R})-1-cyclohexyl-1,3-diazinane-2,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X1Y "Create component" 2020-11-23 RCSB X1Y "Initial release" 2020-12-09 RCSB ##