data_X26
#
_chem_comp.id X26
_chem_comp.name "11-cyclopentyl-5-methyl-2-({4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]-2-[(propan-2-yl)oxy]phenyl}amino)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H48 N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-26
_chem_comp.pdbx_modified_date 2018-08-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 652.829
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X26
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CIS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X26 O1 O1 O 0 1 N N N 10.231 6.114 -2.270 5.615 -4.363 -0.019 O1 X26 1
X26 C27 C1 C 0 1 N N N 9.236 6.825 -2.463 5.267 -3.218 -0.235 C27 X26 2
X26 N1 N1 N 0 1 N N N 8.416 6.529 -3.468 4.081 -2.851 0.228 N1 X26 3
X26 C28 C2 C 0 1 N N N 8.610 5.291 -4.211 3.325 -3.859 0.975 C28 X26 4
X26 C19 C3 C 0 1 Y N N 7.370 7.368 -3.906 3.478 -1.602 0.078 C19 X26 5
X26 C18 C4 C 0 1 Y N N 7.152 7.563 -5.280 2.115 -1.516 -0.169 C18 X26 6
X26 N4 N2 N 0 1 Y N N 6.130 8.342 -5.701 1.551 -0.320 -0.270 N4 X26 7
X26 C26 C5 C 0 1 Y N N 9.018 7.995 -1.560 6.200 -2.366 -0.980 C26 X26 8
X26 C25 C6 C 0 1 Y N N 10.152 8.653 -1.035 6.936 -2.903 -2.042 C25 X26 9
X26 C24 C7 C 0 1 Y N N 10.013 9.733 -0.161 7.838 -2.117 -2.724 C24 X26 10
X26 C23 C8 C 0 1 Y N N 8.744 10.198 0.170 8.028 -0.793 -2.362 C23 X26 11
X26 C22 C9 C 0 1 Y N N 7.610 9.580 -0.337 7.301 -0.244 -1.325 C22 X26 12
X26 C21 C10 C 0 1 Y N N 7.680 8.469 -1.167 6.374 -1.017 -0.640 C21 X26 13
X26 N2 N3 N 0 1 N N N 6.457 7.963 -1.641 5.582 -0.438 0.347 N2 X26 14
X26 C29 C11 C 0 1 N N N 5.266 7.886 -0.772 6.193 0.143 1.546 C29 X26 15
X26 C20 C12 C 0 1 Y N N 6.375 7.985 -3.017 4.210 -0.418 0.178 C20 X26 16
X26 N3 N4 N 0 1 Y N N 5.378 8.748 -3.510 3.573 0.746 0.087 N3 X26 17
X26 C17 C13 C 0 1 Y N N 5.250 8.909 -4.841 2.267 0.785 -0.134 C17 X26 18
X26 N5 N5 N 0 1 N N N 4.266 9.698 -5.350 1.634 2.015 -0.226 N5 X26 19
X26 C14 C14 C 0 1 Y N N 3.030 9.955 -4.798 0.283 2.081 -0.565 C14 X26 20
X26 C13 C15 C 0 1 Y N N 1.989 10.317 -5.745 -0.481 3.183 -0.175 C13 X26 21
X26 C12 C16 C 0 1 Y N N 0.690 10.566 -5.315 -1.818 3.249 -0.511 C12 X26 22
X26 C15 C17 C 0 1 Y N N 2.725 9.956 -3.443 -0.299 1.052 -1.295 C15 X26 23
X26 C16 C18 C 0 1 Y N N 1.415 10.219 -3.033 -1.634 1.113 -1.632 C16 X26 24
X26 C11 C19 C 0 1 Y N N 0.397 10.523 -3.947 -2.404 2.210 -1.241 C11 X26 25
X26 C2 C20 C 0 1 N N N -3.418 10.269 -3.630 -5.958 1.182 -2.130 C2 X26 26
X26 C1 C21 C 0 1 N N N -4.050 8.971 -3.113 -6.849 0.518 -1.075 C1 X26 27
X26 C3 C22 C 0 1 N N N -1.810 8.959 -4.975 -3.986 -0.144 -1.267 C3 X26 28
X26 C4 C23 C 0 1 N N N -2.456 7.667 -4.461 -4.898 -0.794 -0.222 C4 X26 29
X26 C C24 C 0 1 N N N -3.943 7.807 -4.104 -6.320 -0.888 -0.780 C X26 30
X26 C31 C25 C 0 1 N N N 4.196 6.973 -1.337 5.785 1.624 1.682 C31 X26 31
X26 O2 O2 O 0 1 N N N 2.391 10.341 -7.073 0.093 4.191 0.536 O2 X26 32
X26 C5 C26 C 0 1 N N N 1.447 10.180 -8.144 -0.765 5.249 0.969 C5 X26 33
X26 C6 C27 C 0 1 N N N -1.000 10.764 -3.440 -3.833 2.277 -1.602 C6 X26 34
X26 O3 O3 O 0 1 N N N -1.191 11.549 -2.521 -4.350 3.350 -1.843 O3 X26 35
X26 N6 N6 N 0 1 N N N -2.008 10.036 -3.982 -4.566 1.147 -1.664 N6 X26 36
X26 N7 N7 N 0 1 N N N -4.458 6.560 -3.509 -7.191 -1.541 0.207 N7 X26 37
X26 C30 C28 C 0 1 N N N -5.928 6.633 -3.309 -8.568 -1.649 -0.295 C30 X26 38
X26 C33 C29 C 0 1 N N N -6.454 5.336 -2.697 -9.457 -2.260 0.790 C33 X26 39
X26 N8 N8 N 0 1 N N N -6.153 4.188 -3.582 -8.931 -3.580 1.165 N8 X26 40
X26 C35 C30 C 0 1 N N N -4.689 4.114 -3.753 -7.554 -3.472 1.667 C35 X26 41
X26 C36 C31 C 0 1 N N N -4.199 5.413 -4.405 -6.665 -2.861 0.582 C36 X26 42
X26 C37 C32 C 0 1 N N N -6.663 2.955 -2.969 -9.801 -4.233 2.152 C37 X26 43
X26 C7 C33 C 0 1 N N N 5.596 7.368 0.635 5.670 -0.574 2.803 C7 X26 44
X26 C8 C34 C 0 1 N N N 4.313 6.654 1.083 4.963 0.497 3.659 C8 X26 45
X26 C9 C35 C 0 1 N N N 0.801 8.791 -8.168 -1.289 4.939 2.372 C9 X26 46
X26 C10 C36 C 0 1 N N N 2.206 10.445 -9.431 0.020 6.562 0.996 C10 X26 47
X26 C32 C37 C 0 1 N N N 3.334 6.688 -0.094 4.570 1.597 2.643 C32 X26 48
X26 H1 H1 H 0 1 N N N 9.449 4.729 -3.775 3.901 -4.784 1.021 H1 X26 49
X26 H2 H2 H 0 1 N N N 7.694 4.684 -4.157 3.137 -3.498 1.986 H2 X26 50
X26 H3 H3 H 0 1 N N N 8.833 5.526 -5.262 2.376 -4.047 0.473 H3 X26 51
X26 H4 H4 H 0 1 N N N 7.802 7.090 -6.001 1.522 -2.411 -0.278 H4 X26 52
X26 H5 H5 H 0 1 N N N 11.140 8.316 -1.313 6.796 -3.935 -2.327 H5 X26 53
X26 H6 H6 H 0 1 N N N 10.889 10.207 0.257 8.402 -2.535 -3.545 H6 X26 54
X26 H7 H7 H 0 1 N N N 8.641 11.048 0.828 8.747 -0.188 -2.894 H7 X26 55
X26 H8 H8 H 0 1 N N N 6.640 9.977 -0.077 7.454 0.788 -1.047 H8 X26 56
X26 H9 H9 H 0 1 N N N 4.838 8.894 -0.670 7.278 0.057 1.491 H9 X26 57
X26 H10 H10 H 0 1 N N N 4.462 10.142 -6.224 2.131 2.830 -0.054 H10 X26 58
X26 H11 H11 H 0 1 N N N -0.087 10.791 -6.031 -2.410 4.100 -0.209 H11 X26 59
X26 H12 H12 H 0 1 N N N 3.494 9.755 -2.712 0.295 0.203 -1.599 H12 X26 60
X26 H13 H13 H 0 1 N N N 1.180 10.187 -1.979 -2.084 0.312 -2.200 H13 X26 61
X26 H14 H14 H 0 1 N N N -3.476 11.039 -2.847 -6.042 0.641 -3.072 H14 X26 62
X26 H15 H15 H 0 1 N N N -3.965 10.611 -4.521 -6.272 2.216 -2.273 H15 X26 63
X26 H16 H16 H 0 1 N N N -5.114 9.158 -2.908 -6.834 1.111 -0.161 H16 X26 64
X26 H17 H17 H 0 1 N N N -3.543 8.683 -2.180 -7.870 0.452 -1.450 H17 X26 65
X26 H18 H18 H 0 1 N N N -0.733 8.795 -5.129 -2.996 0.016 -0.840 H18 X26 66
X26 H19 H19 H 0 1 N N N -2.276 9.248 -5.928 -3.909 -0.793 -2.139 H19 X26 67
X26 H20 H20 H 0 1 N N N -2.359 6.898 -5.242 -4.531 -1.793 0.010 H20 X26 68
X26 H21 H21 H 0 1 N N N -1.914 7.345 -3.560 -4.902 -0.188 0.684 H21 X26 69
X26 H22 H22 H 0 1 N N N -4.511 8.053 -5.013 -6.312 -1.473 -1.699 H22 X26 70
X26 H23 H23 H 0 1 N N N 3.613 7.478 -2.121 6.599 2.206 2.112 H23 X26 71
X26 H24 H24 H 0 1 N N N 4.632 6.048 -1.742 5.495 2.031 0.712 H24 X26 72
X26 H25 H25 H 0 1 N N N 0.649 10.931 -8.048 -1.604 5.341 0.279 H25 X26 73
X26 H27 H27 H 0 1 N N N -6.160 7.471 -2.635 -8.939 -0.658 -0.554 H27 X26 74
X26 H28 H28 H 0 1 N N N -6.417 6.798 -4.280 -8.583 -2.286 -1.179 H28 X26 75
X26 H29 H29 H 0 1 N N N -7.543 5.414 -2.563 -9.463 -1.610 1.664 H29 X26 76
X26 H30 H30 H 0 1 N N N -5.975 5.176 -1.720 -10.473 -2.368 0.410 H30 X26 77
X26 H32 H32 H 0 1 N N N -4.435 3.259 -4.397 -7.539 -2.835 2.552 H32 X26 78
X26 H33 H33 H 0 1 N N N -4.208 3.989 -2.771 -7.182 -4.463 1.927 H33 X26 79
X26 H34 H34 H 0 1 N N N -3.119 5.338 -4.598 -6.658 -3.511 -0.292 H34 X26 80
X26 H35 H35 H 0 1 N N N -4.731 5.566 -5.355 -5.649 -2.753 0.962 H35 X26 81
X26 H36 H36 H 0 1 N N N -7.754 3.028 -2.850 -10.798 -4.361 1.729 H36 X26 82
X26 H37 H37 H 0 1 N N N -6.422 2.098 -3.615 -9.389 -5.208 2.412 H37 X26 83
X26 H38 H38 H 0 1 N N N -6.195 2.815 -1.983 -9.863 -3.614 3.047 H38 X26 84
X26 H39 H39 H 0 1 N N N 6.443 6.666 0.604 4.963 -1.354 2.522 H39 X26 85
X26 H40 H40 H 0 1 N N N 5.835 8.202 1.312 6.502 -1.007 3.359 H40 X26 86
X26 H41 H41 H 0 1 N N N 3.877 7.173 1.949 4.075 0.080 4.134 H41 X26 87
X26 H42 H42 H 0 1 N N N 4.538 5.612 1.355 5.644 0.895 4.411 H42 X26 88
X26 H43 H43 H 0 1 N N N 0.258 8.622 -7.227 -1.848 4.003 2.353 H43 X26 89
X26 H44 H44 H 0 1 N N N 0.099 8.728 -9.013 -0.449 4.846 3.061 H44 X26 90
X26 H45 H45 H 0 1 N N N 1.582 8.025 -8.282 -1.943 5.746 2.702 H45 X26 91
X26 H46 H46 H 0 1 N N N 2.660 11.446 -9.390 0.393 6.783 -0.004 H46 X26 92
X26 H47 H47 H 0 1 N N N 2.996 9.689 -9.553 -0.634 7.369 1.326 H47 X26 93
X26 H48 H48 H 0 1 N N N 1.512 10.392 -10.283 0.859 6.470 1.685 H48 X26 94
X26 H49 H49 H 0 1 N N N 2.589 7.485 0.048 4.451 2.559 3.141 H49 X26 95
X26 H50 H50 H 0 1 N N N 2.821 5.720 -0.195 3.661 1.322 2.108 H50 X26 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X26 C10 C5 SING N N 1
X26 C9 C5 SING N N 2
X26 C5 O2 SING N N 3
X26 O2 C13 SING N N 4
X26 C13 C12 DOUB Y N 5
X26 C13 C14 SING Y N 6
X26 N4 C18 DOUB Y N 7
X26 N4 C17 SING Y N 8
X26 N5 C17 SING N N 9
X26 N5 C14 SING N N 10
X26 C12 C11 SING Y N 11
X26 C18 C19 SING Y N 12
X26 C3 C4 SING N N 13
X26 C3 N6 SING N N 14
X26 C17 N3 DOUB Y N 15
X26 C14 C15 DOUB Y N 16
X26 C4 C SING N N 17
X26 C36 C35 SING N N 18
X26 C36 N7 SING N N 19
X26 C28 N1 SING N N 20
X26 C N7 SING N N 21
X26 C C1 SING N N 22
X26 N6 C2 SING N N 23
X26 N6 C6 SING N N 24
X26 C11 C6 SING N N 25
X26 C11 C16 DOUB Y N 26
X26 C19 N1 SING N N 27
X26 C19 C20 DOUB Y N 28
X26 C35 N8 SING N N 29
X26 C2 C1 SING N N 30
X26 N8 C37 SING N N 31
X26 N8 C33 SING N N 32
X26 N3 C20 SING Y N 33
X26 N7 C30 SING N N 34
X26 N1 C27 SING N N 35
X26 C15 C16 SING Y N 36
X26 C6 O3 DOUB N N 37
X26 C30 C33 SING N N 38
X26 C20 N2 SING N N 39
X26 C27 O1 DOUB N N 40
X26 C27 C26 SING N N 41
X26 N2 C21 SING N N 42
X26 N2 C29 SING N N 43
X26 C26 C21 DOUB Y N 44
X26 C26 C25 SING Y N 45
X26 C31 C29 SING N N 46
X26 C31 C32 SING N N 47
X26 C21 C22 SING Y N 48
X26 C25 C24 DOUB Y N 49
X26 C29 C7 SING N N 50
X26 C22 C23 DOUB Y N 51
X26 C24 C23 SING Y N 52
X26 C32 C8 SING N N 53
X26 C7 C8 SING N N 54
X26 C28 H1 SING N N 55
X26 C28 H2 SING N N 56
X26 C28 H3 SING N N 57
X26 C18 H4 SING N N 58
X26 C25 H5 SING N N 59
X26 C24 H6 SING N N 60
X26 C23 H7 SING N N 61
X26 C22 H8 SING N N 62
X26 C29 H9 SING N N 63
X26 N5 H10 SING N N 64
X26 C12 H11 SING N N 65
X26 C15 H12 SING N N 66
X26 C16 H13 SING N N 67
X26 C2 H14 SING N N 68
X26 C2 H15 SING N N 69
X26 C1 H16 SING N N 70
X26 C1 H17 SING N N 71
X26 C3 H18 SING N N 72
X26 C3 H19 SING N N 73
X26 C4 H20 SING N N 74
X26 C4 H21 SING N N 75
X26 C H22 SING N N 76
X26 C31 H23 SING N N 77
X26 C31 H24 SING N N 78
X26 C5 H25 SING N N 79
X26 C30 H27 SING N N 80
X26 C30 H28 SING N N 81
X26 C33 H29 SING N N 82
X26 C33 H30 SING N N 83
X26 C35 H32 SING N N 84
X26 C35 H33 SING N N 85
X26 C36 H34 SING N N 86
X26 C36 H35 SING N N 87
X26 C37 H36 SING N N 88
X26 C37 H37 SING N N 89
X26 C37 H38 SING N N 90
X26 C7 H39 SING N N 91
X26 C7 H40 SING N N 92
X26 C8 H41 SING N N 93
X26 C8 H42 SING N N 94
X26 C9 H43 SING N N 95
X26 C9 H44 SING N N 96
X26 C9 H45 SING N N 97
X26 C10 H46 SING N N 98
X26 C10 H47 SING N N 99
X26 C10 H48 SING N N 100
X26 C32 H49 SING N N 101
X26 C32 H50 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X26 SMILES ACDLabs 12.01 "O=C3c1c(cccc1)N(C2CCCC2)c4c(N3C)cnc(n4)Nc5ccc(cc5OC(C)C)C(=O)N6CCC(CC6)N7CCN(C)CC7"
X26 InChI InChI 1.03
"InChI=1S/C37H48N8O3/c1-25(2)48-33-23-26(35(46)44-17-15-27(16-18-44)43-21-19-41(3)20-22-43)13-14-30(33)39-37-38-24-32-34(40-37)45(28-9-5-6-10-28)31-12-8-7-11-29(31)36(47)42(32)4/h7-8,11-14,23-25,27-28H,5-6,9-10,15-22H2,1-4H3,(H,38,39,40)"
X26 InChIKey InChI 1.03 BSUIAMSRPQCIKT-UHFFFAOYSA-N
X26 SMILES_CANONICAL CACTVS 3.385 "CC(C)Oc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7"
X26 SMILES CACTVS 3.385 "CC(C)Oc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7"
X26 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)Oc1cc(ccc1Nc2ncc3c(n2)N(c4ccccc4C(=O)N3C)C5CCCC5)C(=O)N6CCC(CC6)N7CCN(CC7)C"
X26 SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)Oc1cc(ccc1Nc2ncc3c(n2)N(c4ccccc4C(=O)N3C)C5CCCC5)C(=O)N6CCC(CC6)N7CCN(CC7)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X26 "SYSTEMATIC NAME" ACDLabs 12.01 "11-cyclopentyl-5-methyl-2-({4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]-2-[(propan-2-yl)oxy]phenyl}amino)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
X26 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "11-cyclopentyl-5-methyl-2-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-2-propan-2-yloxy-phenyl]amino]pyrimido[4,5-b][1,4]benzodiazepin-6-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X26 "Create component" 2018-02-26 RCSB
X26 "Initial release" 2018-08-29 RCSB
#