data_X27
#
_chem_comp.id X27
_chem_comp.name "2-{[3-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-5-methyl-11-(propan-2-yl)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H33 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-26
_chem_comp.pdbx_modified_date 2019-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 487.597
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X27
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CJ2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X27 O1 O1 O 0 1 N N N -11.910 4.994 0.685 -5.651 -2.732 -0.311 O1 X27 1
X27 C27 C1 C 0 1 N N N -10.906 5.685 0.523 -4.899 -1.779 -0.379 C27 X27 2
X27 N7 N1 N 0 1 N N N -9.810 5.377 1.190 -3.680 -1.935 0.116 N7 X27 3
X27 C28 C2 C 0 1 N N N -9.772 4.135 1.958 -3.376 -3.238 0.714 C28 X27 4
X27 C19 C3 C 0 1 Y N N -8.598 6.094 1.230 -2.655 -0.988 0.127 C19 X27 5
X27 C18 C4 C 0 1 Y N N -7.864 6.057 2.415 -1.347 -1.380 -0.113 C18 X27 6
X27 N4 N2 N 0 1 Y N N -6.676 6.678 2.521 -0.379 -0.476 -0.048 N4 X27 7
X27 C26 C5 C 0 1 Y N N -11.034 6.785 -0.472 -5.422 -0.561 -1.009 C26 X27 8
X27 C25 C6 C 0 1 Y N N -12.328 7.248 -0.678 -6.262 -0.659 -2.123 C25 X27 9
X27 C24 C7 C 0 1 Y N N -12.574 8.237 -1.620 -6.792 0.479 -2.690 C24 X27 10
X27 C23 C8 C 0 1 Y N N -11.533 8.780 -2.361 -6.497 1.726 -2.164 C23 X27 11
X27 C22 C9 C 0 1 Y N N -10.226 8.337 -2.196 -5.653 1.842 -1.078 C22 X27 12
X27 C21 C10 C 0 1 Y N N -9.914 7.343 -1.274 -5.102 0.705 -0.500 C21 X27 13
X27 N6 N3 N 0 1 N N N -8.560 6.979 -1.169 -4.204 0.831 0.555 N6 X27 14
X27 C29 C11 C 0 1 N N N -7.734 7.010 -2.374 -4.618 1.449 1.817 C29 X27 15
X27 C20 C12 C 0 1 Y N N -7.971 6.800 0.085 -2.907 0.360 0.389 C20 X27 16
X27 N5 N4 N 0 1 Y N N -6.777 7.388 0.292 -1.883 1.205 0.462 N5 X27 17
X27 C17 C13 C 0 1 Y N N -6.120 7.313 1.468 -0.645 0.786 0.247 C17 X27 18
X27 N3 N5 N 0 1 N N N -4.915 7.928 1.553 0.399 1.694 0.334 N3 X27 19
X27 C14 C14 C 0 1 Y N N -3.846 7.437 2.235 1.724 1.251 0.225 C14 X27 20
X27 C13 C15 C 0 1 Y N N -3.969 6.386 3.153 2.680 2.064 -0.370 C13 X27 21
X27 C12 C16 C 0 1 Y N N -2.871 5.901 3.863 3.987 1.629 -0.478 C12 X27 22
X27 C15 C17 C 0 1 Y N N -2.600 8.027 2.032 2.080 0.002 0.716 C15 X27 23
X27 C16 C18 C 0 1 Y N N -1.472 7.571 2.712 3.389 -0.435 0.608 C16 X27 24
X27 C11 C19 C 0 1 Y N N -1.605 6.452 3.677 4.346 0.380 0.006 C11 X27 25
X27 N1 N6 N 0 1 N N N -0.496 5.995 4.415 5.673 -0.061 -0.105 N1 X27 26
X27 C2 C20 C 0 1 N N N 0.406 7.035 4.925 6.062 -0.211 -1.514 C2 X27 27
X27 C1 C21 C 0 1 N N N 1.705 6.468 5.481 7.486 -0.768 -1.591 C1 X27 28
X27 C3 C22 C 0 1 N N N -0.384 4.572 4.738 6.590 0.847 0.598 C3 X27 29
X27 C4 C23 C 0 1 N N N 0.996 4.244 5.302 8.014 0.290 0.521 C4 X27 30
X27 N N7 N 0 1 N N N 1.418 5.268 6.260 8.403 0.140 -0.888 N X27 31
X27 C C24 C 0 1 N N N 2.635 4.835 6.964 9.792 -0.322 -1.004 C X27 32
X27 C31 C25 C 0 1 N N N -6.682 5.907 -2.374 -4.452 0.442 2.957 C31 X27 33
X27 C32 C26 C 0 1 N N N -7.078 8.393 -2.456 -3.750 2.678 2.092 C32 X27 34
X27 O33 O2 O 0 1 N N N -0.249 8.155 2.507 3.741 -1.657 1.088 O33 X27 35
X27 C34 C27 C 0 1 N N N -0.026 9.013 1.389 2.708 -2.438 1.693 C34 X27 36
X27 H1 H1 H 0 1 N N N -8.792 4.036 2.448 -4.251 -3.883 0.642 H1 X27 37
X27 H2 H2 H 0 1 N N N -10.563 4.152 2.722 -2.542 -3.696 0.182 H2 X27 38
X27 H3 H3 H 0 1 N N N -9.932 3.282 1.283 -3.108 -3.103 1.762 H3 X27 39
X27 H4 H4 H 0 1 N N N -8.258 5.519 3.265 -1.119 -2.409 -0.351 H4 X27 40
X27 H5 H5 H 0 1 N N N -13.145 6.837 -0.103 -6.496 -1.628 -2.539 H5 X27 41
X27 H6 H6 H 0 1 N N N -13.583 8.587 -1.778 -7.441 0.399 -3.550 H6 X27 42
X27 H7 H7 H 0 1 N N N -11.742 9.560 -3.078 -6.930 2.612 -2.605 H7 X27 43
X27 H8 H8 H 0 1 N N N -9.439 8.772 -2.794 -5.419 2.817 -0.678 H8 X27 44
X27 H9 H9 H 0 1 N N N -8.376 6.879 -3.258 -5.663 1.751 1.748 H9 X27 45
X27 H10 H10 H 0 1 N N N -4.805 8.803 1.082 0.213 2.636 0.470 H10 X27 46
X27 H11 H11 H 0 1 N N N -4.939 5.940 3.315 2.402 3.036 -0.747 H11 X27 47
X27 H12 H12 H 0 1 N N N -3.003 5.090 4.564 4.730 2.262 -0.941 H12 X27 48
X27 H13 H13 H 0 1 N N N -2.507 8.849 1.338 1.337 -0.627 1.182 H13 X27 49
X27 H14 H14 H 0 1 N N N 0.647 7.725 4.103 5.376 -0.898 -2.010 H14 X27 50
X27 H15 H15 H 0 1 N N N -0.109 7.585 5.726 6.024 0.760 -2.007 H15 X27 51
X27 H16 H16 H 0 1 N N N 2.379 6.213 4.650 7.517 -1.752 -1.122 H16 X27 52
X27 H17 H17 H 0 1 N N N 2.186 7.218 6.126 7.787 -0.853 -2.635 H17 X27 53
X27 H18 H18 H 0 1 N N N -1.149 4.312 5.485 6.558 1.830 0.128 H18 X27 54
X27 H19 H19 H 0 1 N N N -0.548 3.982 3.824 6.289 0.932 1.642 H19 X27 55
X27 H20 H20 H 0 1 N N N 0.957 3.269 5.809 8.700 0.977 1.016 H20 X27 56
X27 H21 H21 H 0 1 N N N 1.722 4.199 4.477 8.051 -0.681 1.014 H21 X27 57
X27 H23 H23 H 0 1 N N N 2.941 5.612 7.680 10.076 -0.360 -2.056 H23 X27 58
X27 H24 H24 H 0 1 N N N 2.432 3.898 7.504 10.450 0.368 -0.476 H24 X27 59
X27 H25 H25 H 0 1 N N N 3.442 4.670 6.234 9.883 -1.316 -0.567 H25 X27 60
X27 H26 H26 H 0 1 N N N -7.178 4.927 -2.315 -3.406 0.140 3.025 H26 X27 61
X27 H27 H27 H 0 1 N N N -6.092 5.964 -3.300 -4.759 0.902 3.896 H27 X27 62
X27 H28 H28 H 0 1 N N N -6.017 6.035 -1.507 -5.070 -0.433 2.761 H28 X27 63
X27 H29 H29 H 0 1 N N N -7.857 9.170 -2.454 -2.704 2.377 2.160 H29 X27 64
X27 H30 H30 H 0 1 N N N -6.416 8.536 -1.590 -3.868 3.396 1.280 H30 X27 65
X27 H31 H31 H 0 1 N N N -6.490 8.465 -3.383 -4.057 3.138 3.031 H31 X27 66
X27 H32 H32 H 0 1 N N N 1.012 9.376 1.406 3.122 -3.388 2.033 H32 X27 67
X27 H33 H33 H 0 1 N N N -0.204 8.455 0.458 2.294 -1.897 2.544 H33 X27 68
X27 H34 H34 H 0 1 N N N -0.715 9.869 1.441 1.920 -2.626 0.963 H34 X27 69
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X27 C32 C29 SING N N 1
X27 C29 C31 SING N N 2
X27 C29 N6 SING N N 3
X27 C23 C22 DOUB Y N 4
X27 C23 C24 SING Y N 5
X27 C22 C21 SING Y N 6
X27 C24 C25 DOUB Y N 7
X27 C21 N6 SING N N 8
X27 C21 C26 DOUB Y N 9
X27 N6 C20 SING N N 10
X27 C25 C26 SING Y N 11
X27 C26 C27 SING N N 12
X27 C20 N5 DOUB Y N 13
X27 C20 C19 SING Y N 14
X27 N5 C17 SING Y N 15
X27 C27 O1 DOUB N N 16
X27 C27 N7 SING N N 17
X27 N7 C19 SING N N 18
X27 N7 C28 SING N N 19
X27 C19 C18 DOUB Y N 20
X27 C34 O33 SING N N 21
X27 C17 N3 SING N N 22
X27 C17 N4 DOUB Y N 23
X27 N3 C14 SING N N 24
X27 C15 C14 DOUB Y N 25
X27 C15 C16 SING Y N 26
X27 C14 C13 SING Y N 27
X27 C18 N4 SING Y N 28
X27 O33 C16 SING N N 29
X27 C16 C11 DOUB Y N 30
X27 C13 C12 DOUB Y N 31
X27 C11 C12 SING Y N 32
X27 C11 N1 SING N N 33
X27 N1 C3 SING N N 34
X27 N1 C2 SING N N 35
X27 C3 C4 SING N N 36
X27 C2 C1 SING N N 37
X27 C4 N SING N N 38
X27 C1 N SING N N 39
X27 N C SING N N 40
X27 C28 H1 SING N N 41
X27 C28 H2 SING N N 42
X27 C28 H3 SING N N 43
X27 C18 H4 SING N N 44
X27 C25 H5 SING N N 45
X27 C24 H6 SING N N 46
X27 C23 H7 SING N N 47
X27 C22 H8 SING N N 48
X27 C29 H9 SING N N 49
X27 N3 H10 SING N N 50
X27 C13 H11 SING N N 51
X27 C12 H12 SING N N 52
X27 C15 H13 SING N N 53
X27 C2 H14 SING N N 54
X27 C2 H15 SING N N 55
X27 C1 H16 SING N N 56
X27 C1 H17 SING N N 57
X27 C3 H18 SING N N 58
X27 C3 H19 SING N N 59
X27 C4 H20 SING N N 60
X27 C4 H21 SING N N 61
X27 C H23 SING N N 62
X27 C H24 SING N N 63
X27 C H25 SING N N 64
X27 C31 H26 SING N N 65
X27 C31 H27 SING N N 66
X27 C31 H28 SING N N 67
X27 C32 H29 SING N N 68
X27 C32 H30 SING N N 69
X27 C32 H31 SING N N 70
X27 C34 H32 SING N N 71
X27 C34 H33 SING N N 72
X27 C34 H34 SING N N 73
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X27 SMILES ACDLabs 12.01 "O=C2N(c1cnc(nc1N(c3c2cccc3)C(C)C)Nc4ccc(c(c4)OC)N5CCN(CC5)C)C"
X27 InChI InChI 1.03 "InChI=1S/C27H33N7O2/c1-18(2)34-21-9-7-6-8-20(21)26(35)32(4)23-17-28-27(30-25(23)34)29-19-10-11-22(24(16-19)36-5)33-14-12-31(3)13-15-33/h6-11,16-18H,12-15H2,1-5H3,(H,28,29,30)"
X27 InChIKey InChI 1.03 OIBWIGLECGTHPO-UHFFFAOYSA-N
X27 SMILES_CANONICAL CACTVS 3.385 "COc1cc(Nc2ncc3N(C)C(=O)c4ccccc4N(C(C)C)c3n2)ccc1N5CCN(C)CC5"
X27 SMILES CACTVS 3.385 "COc1cc(Nc2ncc3N(C)C(=O)c4ccccc4N(C(C)C)c3n2)ccc1N5CCN(C)CC5"
X27 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)N1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4ccc(c(c4)OC)N5CCN(CC5)C)C"
X27 SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)N1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4ccc(c(c4)OC)N5CCN(CC5)C)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X27 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[3-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-5-methyl-11-(propan-2-yl)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
X27 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[[3-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-11-propan-2-yl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X27 "Create component" 2018-02-26 RCSB
X27 "Initial release" 2019-03-06 RCSB
##