data_X2R # _chem_comp.id X2R _chem_comp.name "(2~{S})-2-azanyl-6-[[(2~{R})-1-[[(1~{R})-2-methyl-1-sulfo-propyl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H25 N3 O7 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-31 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.484 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P7P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X2R C8 C1 C 0 1 N N N N N N 55.564 75.341 8.215 3.000 -0.376 -0.532 C8 X2R 1 X2R C5 C2 C 0 1 N N N N N N 50.195 79.450 11.209 -5.019 -1.227 1.366 C5 X2R 2 X2R C4 C3 C 0 1 N N R N N N 50.437 79.473 9.669 -4.212 -0.798 0.139 C4 X2R 3 X2R C3 C4 C 0 1 N N N N N N 52.380 78.474 8.578 -1.826 -0.320 0.015 C3 X2R 4 X2R C2 C5 C 0 1 N N N N N N 53.775 79.593 6.833 -0.814 1.937 0.192 C2 X2R 5 X2R C1 C6 C 0 1 N N R N N N 53.800 78.686 8.058 -0.606 0.445 0.458 C1 X2R 6 X2R C6 C7 C 0 1 N N N N N N 50.347 78.043 11.774 -6.178 -2.124 0.927 C6 X2R 7 X2R C10 C8 C 0 1 N N N N N N 55.652 72.818 8.402 5.489 -0.598 -0.498 C10 X2R 8 X2R C12 C9 C 0 1 N N N N N N 55.706 70.325 8.556 7.945 -0.922 -0.395 C12 X2R 9 X2R N N1 N 0 1 N N N N N N 54.436 77.417 7.751 0.563 -0.026 -0.289 N X2R 10 X2R C C10 C 0 1 N N N N N N 54.916 76.612 8.703 1.798 0.108 0.237 C X2R 11 X2R O O1 O 0 1 N N N N N N 54.841 76.880 9.900 1.940 0.619 1.327 O X2R 12 X2R C11 C11 C 0 1 N N S N N N 54.997 71.586 9.028 6.756 -0.329 0.316 C11 X2R 13 X2R C7 C12 C 0 1 N N N N N N 51.113 80.419 11.941 -4.113 -1.999 2.327 C7 X2R 14 X2R C9 C13 C 0 1 N N N N N N 54.913 74.091 8.794 4.267 -0.107 0.282 C9 X2R 15 X2R N1 N2 N 0 1 N N N N N N 51.874 79.447 9.343 -3.026 -0.055 0.569 N1 X2R 16 X2R N2 N3 N 0 1 N N N N N N 55.029 71.699 10.497 6.945 1.121 0.461 N2 X2R 17 X2R O1 O2 O 0 1 N N N N N N 50.515 80.833 7.530 -5.911 1.240 -0.142 O1 X2R 18 X2R O2 O3 O 0 1 N N N N N N 48.380 80.519 8.500 -4.531 0.620 -2.099 O2 X2R 19 X2R O3 O4 O 0 1 N N N N N N 50.014 82.030 9.501 -6.348 -0.657 -1.412 O3 X2R 20 X2R O4 O5 O 0 1 N N N N N N 51.760 77.454 8.292 -1.729 -1.174 -0.840 O4 X2R 21 X2R O5 O6 O 0 1 N N N N N N 55.595 70.129 7.269 8.668 -0.215 -1.056 O5 X2R 22 X2R O6 O7 O 0 1 N N N N N N 56.312 69.595 9.306 8.200 -2.236 -0.294 O6 X2R 23 X2R S S1 S 0 1 N N N N N N 53.180 78.781 5.327 0.655 2.857 0.725 S X2R 24 X2R S1 S2 S 0 1 N N N N N N 49.733 80.838 8.785 -5.238 0.260 -0.920 S1 X2R 25 X2R H1 H1 H 0 1 N N N N N N 55.485 75.304 7.119 2.907 -1.447 -0.715 H1 X2R 26 X2R H2 H2 H 0 1 N N N N N N 56.625 75.352 8.506 3.060 0.152 -1.483 H2 X2R 27 X2R H3 H3 H 0 1 N N N N N N 49.158 79.772 11.383 -5.413 -0.343 1.868 H3 X2R 28 X2R H4 H4 H 0 1 N N N N N N 49.964 78.575 9.245 -3.904 -1.682 -0.421 H4 X2R 29 X2R H5 H5 H 0 1 N N N N N N 54.797 79.955 6.650 -0.975 2.096 -0.874 H5 X2R 30 X2R H6 H6 H 0 1 N N N N N N 53.116 80.447 7.049 -1.684 2.287 0.748 H6 X2R 31 X2R H7 H7 H 0 1 N N N N N N 54.377 79.193 8.845 -0.444 0.285 1.524 H7 X2R 32 X2R H8 H8 H 0 1 N N N N N N 50.170 78.062 12.860 -6.665 -2.545 1.806 H8 X2R 33 X2R H9 H9 H 0 1 N N N N N N 49.616 77.375 11.295 -6.899 -1.534 0.359 H9 X2R 34 X2R H10 H10 H 0 1 N N N N N N 51.365 77.676 11.575 -5.796 -2.931 0.301 H10 X2R 35 X2R H11 H11 H 0 1 N N N N N N 55.636 72.716 7.307 5.549 -0.070 -1.450 H11 X2R 36 X2R H12 H12 H 0 1 N N N N N N 56.694 72.886 8.749 5.395 -1.669 -0.682 H12 X2R 37 X2R H13 H13 H 0 1 N N N N N N 54.517 77.136 6.795 0.449 -0.434 -1.161 H13 X2R 38 X2R H14 H14 H 0 1 N N N N N N 53.950 71.543 8.693 6.658 -0.783 1.302 H14 X2R 39 X2R H15 H15 H 0 1 N N N N N N 50.910 80.372 13.021 -3.719 -2.882 1.825 H15 X2R 40 X2R H16 H16 H 0 1 N N N N N N 52.161 80.144 11.752 -3.287 -1.360 2.640 H16 X2R 41 X2R H17 H17 H 0 1 N N N N N N 50.931 81.441 11.578 -4.688 -2.304 3.202 H17 X2R 42 X2R H18 H18 H 0 1 N N N N N N 54.906 74.172 9.891 4.361 0.964 0.466 H18 X2R 43 X2R H19 H19 H 0 1 N N N N N N 53.879 74.027 8.424 4.207 -0.635 1.234 H19 X2R 44 X2R H20 H20 H 0 1 N N N N N N 52.476 80.163 9.697 -3.103 0.628 1.254 H20 X2R 45 X2R H21 H21 H 0 1 N N N N N N 54.600 70.892 10.903 7.039 1.565 -0.440 H21 X2R 46 X2R H22 H22 H 0 1 N N N N N N 55.978 71.763 10.806 6.192 1.533 0.991 H22 X2R 47 X2R H24 H24 H 0 1 N N N N N N 56.684 68.873 8.814 8.974 -2.571 -0.768 H24 X2R 48 X2R H25 H25 H 0 1 N N N N N N 53.254 79.742 4.454 0.336 4.131 0.436 H25 X2R 49 X2R H23 H23 H 0 1 N N N N N N 50.639 82.553 9.013 -6.984 -0.225 -1.998 H23 X2R 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X2R S C2 SING N N 1 X2R C2 C1 SING N N 2 X2R O5 C12 DOUB N N 3 X2R O1 S1 DOUB N N 4 X2R N C1 SING N N 5 X2R N C SING N N 6 X2R C1 C3 SING N N 7 X2R C8 C SING N N 8 X2R C8 C9 SING N N 9 X2R O4 C3 DOUB N N 10 X2R C10 C9 SING N N 11 X2R C10 C11 SING N N 12 X2R O2 S1 DOUB N N 13 X2R C12 C11 SING N N 14 X2R C12 O6 SING N N 15 X2R C3 N1 SING N N 16 X2R C O DOUB N N 17 X2R S1 O3 SING N N 18 X2R S1 C4 SING N N 19 X2R C11 N2 SING N N 20 X2R N1 C4 SING N N 21 X2R C4 C5 SING N N 22 X2R C5 C6 SING N N 23 X2R C5 C7 SING N N 24 X2R C8 H1 SING N N 25 X2R C8 H2 SING N N 26 X2R C5 H3 SING N N 27 X2R C4 H4 SING N N 28 X2R C2 H5 SING N N 29 X2R C2 H6 SING N N 30 X2R C1 H7 SING N N 31 X2R C6 H8 SING N N 32 X2R C6 H9 SING N N 33 X2R C6 H10 SING N N 34 X2R C10 H11 SING N N 35 X2R C10 H12 SING N N 36 X2R N H13 SING N N 37 X2R C11 H14 SING N N 38 X2R C7 H15 SING N N 39 X2R C7 H16 SING N N 40 X2R C7 H17 SING N N 41 X2R C9 H18 SING N N 42 X2R C9 H19 SING N N 43 X2R N1 H20 SING N N 44 X2R N2 H21 SING N N 45 X2R N2 H22 SING N N 46 X2R O6 H24 SING N N 47 X2R S H25 SING N N 48 X2R O3 H23 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X2R InChI InChI 1.06 "InChI=1S/C13H25N3O7S2/c1-7(2)12(25(21,22)23)16-11(18)9(6-24)15-10(17)5-3-4-8(14)13(19)20/h7-9,12,24H,3-6,14H2,1-2H3,(H,15,17)(H,16,18)(H,19,20)(H,21,22,23)/t8-,9-,12+/m0/s1" X2R InChIKey InChI 1.06 SLYPAEUXHCDCFQ-HOTUBEGUSA-N X2R SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)[C@H](CS)NC(=O)CCC[C@H](N)C(O)=O)[S](O)(=O)=O" X2R SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH](CS)NC(=O)CCC[CH](N)C(O)=O)[S](O)(=O)=O" X2R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H](NC(=O)[C@H](CS)NC(=O)CCC[C@@H](C(=O)O)N)S(=O)(=O)O" X2R SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(NC(=O)C(CS)NC(=O)CCCC(C(=O)O)N)S(=O)(=O)O" # _pdbx_chem_comp_identifier.comp_id X2R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(2~{R})-1-[[(1~{R})-2-methyl-1-sulfo-propyl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X2R "Create component" 2023-05-31 PDBE X2R "Initial release" 2024-06-12 RCSB #