data_X2U # _chem_comp.id X2U _chem_comp.name "N-(3-{4-[3-({2-[(3R)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}amino)propoxy]butoxy}propyl)-4-sulfamoylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H37 N5 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-26 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 643.708 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X2U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EXC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X2U C02 C1 C 0 1 N N N 33.469 15.781 12.656 -9.296 -0.109 -0.116 C02 X2U 1 X2U C04 C2 C 0 1 N N R 35.964 16.343 11.720 -11.462 -1.332 -0.139 C04 X2U 2 X2U C05 C3 C 0 1 N N N 35.362 17.590 11.210 -12.344 -1.336 -1.392 C05 X2U 3 X2U C06 C4 C 0 1 N N N 35.568 17.974 9.826 -13.271 -2.555 -1.332 C06 X2U 4 X2U C07 C5 C 0 1 N N N 36.081 17.044 8.756 -14.052 -2.519 -0.044 C07 X2U 5 X2U C09 C6 C 0 1 N N N 36.481 15.311 10.685 -12.339 -1.363 1.085 C09 X2U 6 X2U C12 C7 C 0 1 N N N 35.230 15.934 14.178 -11.134 1.134 -0.110 C12 X2U 7 X2U C13 C8 C 0 1 Y N N 33.931 15.607 14.969 -10.002 2.083 -0.094 C13 X2U 8 X2U C14 C9 C 0 1 Y N N 33.707 15.404 16.350 -9.897 3.462 -0.077 C14 X2U 9 X2U C15 C10 C 0 1 Y N N 32.429 15.117 16.821 -8.644 4.062 -0.065 C15 X2U 10 X2U C16 C11 C 0 1 Y N N 31.358 15.028 15.924 -7.499 3.296 -0.069 C16 X2U 11 X2U C17 C12 C 0 1 Y N N 31.554 15.219 14.552 -7.583 1.901 -0.084 C17 X2U 12 X2U C19 C13 C 0 1 N N N 29.384 14.055 13.828 -5.115 1.781 -0.075 C19 X2U 13 X2U C20 C14 C 0 1 N N N 27.978 14.534 14.249 -4.019 0.714 -0.082 C20 X2U 14 X2U C21 C15 C 0 1 N N N 26.974 13.383 14.488 -2.647 1.393 -0.069 C21 X2U 15 X2U C23 C16 C 0 1 N N N 24.748 13.044 15.466 -0.296 0.927 -0.063 C23 X2U 16 X2U C24 C17 C 0 1 N N N 24.100 11.979 14.561 0.713 -0.224 -0.072 C24 X2U 17 X2U C25 C18 C 0 1 N N N 22.771 11.359 15.079 2.134 0.344 -0.059 C25 X2U 18 X2U C26 C19 C 0 1 N N N 22.113 10.395 14.062 3.143 -0.806 -0.068 C26 X2U 19 X2U C28 C20 C 0 1 N N N 20.132 9.119 13.578 5.494 -1.272 -0.062 C28 X2U 20 X2U C29 C21 C 0 1 N N N 20.320 7.585 13.386 6.865 -0.594 -0.049 C29 X2U 21 X2U C30 C22 C 0 1 N N N 19.405 6.821 12.380 7.962 -1.661 -0.056 C30 X2U 22 X2U C32 C23 C 0 1 N N N 17.530 5.635 13.674 10.396 -1.759 -0.046 C32 X2U 23 X2U C33 C24 C 0 1 Y N N 16.931 4.425 14.428 11.722 -1.103 -0.033 C33 X2U 24 X2U C34 C25 C 0 1 Y N N 17.776 3.430 14.913 11.815 0.289 -0.012 C34 X2U 25 X2U C35 C26 C 0 1 Y N N 17.277 2.352 15.610 13.054 0.895 0.000 C35 X2U 26 X2U C36 C27 C 0 1 Y N N 15.913 2.260 15.849 14.204 0.124 -0.009 C36 X2U 27 X2U C41 C28 C 0 1 Y N N 15.066 3.263 15.405 14.118 -1.257 -0.030 C41 X2U 28 X2U C42 C29 C 0 1 Y N N 15.570 4.342 14.706 12.885 -1.874 -0.037 C42 X2U 29 X2U C44 C30 C 0 1 Y N N 32.869 15.518 14.070 -8.834 1.289 -0.098 C44 X2U 30 X2U N03 N1 N 0 1 N N N 34.928 16.014 12.760 -10.642 -0.118 -0.122 N03 X2U 31 X2U N08 N2 N 0 1 N N N 36.582 15.735 9.248 -13.549 -1.944 1.059 N08 X2U 32 X2U N18 N3 N 0 1 N N N 30.384 15.116 13.666 -6.428 1.132 -0.088 N18 X2U 33 X2U N31 N4 N 0 1 N N N 18.856 5.615 13.044 9.275 -1.011 -0.043 N31 X2U 34 X2U N38 N5 N 0 1 N N N 15.880 -0.626 16.084 16.219 1.099 1.592 N38 X2U 35 X2U O01 O1 O 0 1 N N N 32.833 15.795 11.641 -8.581 -1.092 -0.128 O01 X2U 36 X2U O10 O2 O 0 1 N N N 36.752 14.211 11.017 -11.946 -0.853 2.112 O10 X2U 37 X2U O11 O3 O 0 1 N N N 36.102 17.390 7.615 -15.156 -3.018 -0.004 O11 X2U 38 X2U O22 O4 O 0 1 N N N 25.676 13.879 14.779 -1.623 0.396 -0.075 O22 X2U 39 X2U O27 O5 O 0 1 N N N 21.005 9.661 14.574 4.470 -0.275 -0.056 O27 X2U 40 X2U O39 O6 O 0 1 N N N 13.829 0.836 16.729 16.698 -0.029 -0.551 O39 X2U 41 X2U O40 O7 O 0 1 N N N 15.734 0.937 18.147 15.590 2.211 -0.520 O40 X2U 42 X2U O43 O8 O 0 1 N N N 16.871 6.616 13.619 10.318 -2.972 -0.060 O43 X2U 43 X2U O45 O9 O 0 1 N N N 36.315 16.077 14.648 -12.311 1.433 -0.111 O45 X2U 44 X2U S37 S1 S 0 1 N N N 15.274 0.801 16.757 15.783 0.905 0.006 S37 X2U 45 X2U H041 H1 H 0 0 N N N 36.857 16.652 12.284 -10.815 -2.209 -0.146 H041 X2U 46 X2U H052 H2 H 0 0 N N N 35.753 18.410 11.830 -12.940 -0.424 -1.424 H052 X2U 47 X2U H051 H3 H 0 0 N N N 34.276 17.504 11.359 -11.716 -1.394 -2.281 H051 X2U 48 X2U H062 H4 H 0 0 N N N 36.276 18.815 9.853 -13.960 -2.530 -2.176 H062 X2U 49 X2U H061 H5 H 0 0 N N N 34.591 18.329 9.467 -12.677 -3.467 -1.374 H061 X2U 50 X2U H141 H6 H 0 0 N N N 34.532 15.472 17.043 -10.788 4.072 -0.075 H141 X2U 51 X2U H151 H7 H 0 0 N N N 32.264 14.963 17.877 -8.566 5.139 -0.053 H151 X2U 52 X2U H161 H8 H 0 0 N N N 30.368 14.809 16.296 -6.531 3.775 -0.059 H161 X2U 53 X2U H192 H9 H 0 0 N N N 29.290 13.527 12.868 -5.021 2.393 0.822 H192 X2U 54 X2U H191 H10 H 0 0 N N N 29.750 13.357 14.596 -5.014 2.413 -0.958 H191 X2U 55 X2U H201 H11 H 0 0 N N N 28.072 15.111 15.181 -4.120 0.083 0.801 H201 X2U 56 X2U H202 H12 H 0 0 N N N 27.580 15.182 13.455 -4.113 0.103 -0.979 H202 X2U 57 X2U H212 H13 H 0 0 N N N 26.924 12.758 13.584 -2.546 2.024 -0.951 H212 X2U 58 X2U H211 H14 H 0 0 N N N 27.323 12.774 15.335 -2.553 2.004 0.829 H211 X2U 59 X2U H232 H15 H 0 0 N N N 23.952 13.677 15.885 -0.153 1.529 0.834 H232 X2U 60 X2U H231 H16 H 0 0 N N N 25.277 12.532 16.283 -0.146 1.548 -0.946 H231 X2U 61 X2U H241 H17 H 0 0 N N N 24.825 11.161 14.432 0.562 -0.845 0.811 H241 X2U 62 X2U H242 H18 H 0 0 N N N 23.896 12.445 13.586 0.570 -0.826 -0.969 H242 X2U 63 X2U H252 H19 H 0 0 N N N 22.065 12.175 15.295 2.284 0.966 -0.942 H252 X2U 64 X2U H251 H20 H 0 0 N N N 22.982 10.802 16.004 2.276 0.946 0.838 H251 X2U 65 X2U H262 H21 H 0 0 N N N 22.876 9.676 13.727 2.992 -1.428 0.815 H262 X2U 66 X2U H261 H22 H 0 0 N N N 21.765 10.987 13.203 3.000 -1.408 -0.965 H261 X2U 67 X2U H282 H23 H 0 0 N N N 20.335 9.621 12.621 5.400 -1.884 -0.960 H282 X2U 68 X2U H281 H24 H 0 0 N N N 19.092 9.311 13.879 5.392 -1.903 0.820 H281 X2U 69 X2U H292 H25 H 0 0 N N N 20.173 7.118 14.371 6.967 0.038 -0.932 H292 X2U 70 X2U H291 H26 H 0 0 N N N 21.358 7.428 13.058 6.959 0.018 0.848 H291 X2U 71 X2U H301 H27 H 0 0 N N N 19.994 6.521 11.501 7.860 -2.292 0.827 H301 X2U 72 X2U H302 H28 H 0 0 N N N 18.579 7.475 12.063 7.868 -2.272 -0.953 H302 X2U 73 X2U H341 H29 H 0 0 N N N 18.839 3.505 14.740 10.918 0.891 -0.005 H341 X2U 74 X2U H351 H30 H 0 0 N N N 17.944 1.582 15.969 13.128 1.972 0.016 H351 X2U 75 X2U H411 H31 H 0 0 N N N 14.007 3.200 15.607 15.019 -1.852 -0.038 H411 X2U 76 X2U H421 H32 H 0 0 N N N 14.905 5.125 14.374 12.820 -2.952 -0.049 H421 X2U 77 X2U H081 H33 H 0 0 N N N 37.005 15.109 8.593 -14.080 -1.949 1.870 H081 X2U 78 X2U H181 H34 H 0 0 N N N 30.742 15.025 12.737 -6.491 0.164 -0.099 H181 X2U 79 X2U H311 H35 H 0 0 N N N 19.397 4.774 13.063 9.337 -0.043 -0.032 H311 X2U 80 X2U H1 H36 H 0 1 N N N 15.523 -1.411 16.590 17.157 1.090 1.841 H1 X2U 81 X2U H381 H37 H 0 0 N N N 15.597 -0.689 15.127 15.538 1.221 2.271 H381 X2U 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X2U O11 C07 DOUB N N 1 X2U C07 N08 SING N N 2 X2U C07 C06 SING N N 3 X2U N08 C09 SING N N 4 X2U C06 C05 SING N N 5 X2U C09 O10 DOUB N N 6 X2U C09 C04 SING N N 7 X2U C05 C04 SING N N 8 X2U O01 C02 DOUB N N 9 X2U C04 N03 SING N N 10 X2U C30 N31 SING N N 11 X2U C30 C29 SING N N 12 X2U C02 N03 SING N N 13 X2U C02 C44 SING N N 14 X2U N03 C12 SING N N 15 X2U N31 C32 SING N N 16 X2U C29 C28 SING N N 17 X2U C28 O27 SING N N 18 X2U O43 C32 DOUB N N 19 X2U N18 C19 SING N N 20 X2U N18 C17 SING N N 21 X2U C32 C33 SING N N 22 X2U C19 C20 SING N N 23 X2U C26 O27 SING N N 24 X2U C26 C25 SING N N 25 X2U C44 C17 DOUB Y N 26 X2U C44 C13 SING Y N 27 X2U C12 O45 DOUB N N 28 X2U C12 C13 SING N N 29 X2U C20 C21 SING N N 30 X2U C33 C42 DOUB Y N 31 X2U C33 C34 SING Y N 32 X2U C21 O22 SING N N 33 X2U C17 C16 SING Y N 34 X2U C24 C25 SING N N 35 X2U C24 C23 SING N N 36 X2U C42 C41 SING Y N 37 X2U O22 C23 SING N N 38 X2U C34 C35 DOUB Y N 39 X2U C13 C14 DOUB Y N 40 X2U C41 C36 DOUB Y N 41 X2U C35 C36 SING Y N 42 X2U C36 S37 SING N N 43 X2U C16 C15 DOUB Y N 44 X2U N38 S37 SING N N 45 X2U C14 C15 SING Y N 46 X2U O39 S37 DOUB N N 47 X2U S37 O40 DOUB N N 48 X2U C04 H041 SING N N 49 X2U C05 H052 SING N N 50 X2U C05 H051 SING N N 51 X2U C06 H062 SING N N 52 X2U C06 H061 SING N N 53 X2U C14 H141 SING N N 54 X2U C15 H151 SING N N 55 X2U C16 H161 SING N N 56 X2U C19 H192 SING N N 57 X2U C19 H191 SING N N 58 X2U C20 H201 SING N N 59 X2U C20 H202 SING N N 60 X2U C21 H212 SING N N 61 X2U C21 H211 SING N N 62 X2U C23 H232 SING N N 63 X2U C23 H231 SING N N 64 X2U C24 H241 SING N N 65 X2U C24 H242 SING N N 66 X2U C25 H252 SING N N 67 X2U C25 H251 SING N N 68 X2U C26 H262 SING N N 69 X2U C26 H261 SING N N 70 X2U C28 H282 SING N N 71 X2U C28 H281 SING N N 72 X2U C29 H292 SING N N 73 X2U C29 H291 SING N N 74 X2U C30 H301 SING N N 75 X2U C30 H302 SING N N 76 X2U C34 H341 SING N N 77 X2U C35 H351 SING N N 78 X2U C41 H411 SING N N 79 X2U C42 H421 SING N N 80 X2U N08 H081 SING N N 81 X2U N18 H181 SING N N 82 X2U N31 H311 SING N N 83 X2U N38 H1 SING N N 84 X2U N38 H381 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X2U SMILES ACDLabs 12.01 "NS(=O)(=O)c1ccc(cc1)C(=O)NCCCOCCCCOCCCNc1cccc2C(=O)N(C(=O)c21)C1CCC(=O)NC1=O" X2U InChI InChI 1.06 "InChI=1S/C30H37N5O9S/c31-45(41,42)21-10-8-20(9-11-21)27(37)33-15-5-19-44-17-2-1-16-43-18-4-14-32-23-7-3-6-22-26(23)30(40)35(29(22)39)24-12-13-25(36)34-28(24)38/h3,6-11,24,32H,1-2,4-5,12-19H2,(H,33,37)(H2,31,41,42)(H,34,36,38)/t24-/m1/s1" X2U InChIKey InChI 1.06 RBECNOZCCFLMDH-XMMPIXPASA-N X2U SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)c1ccc(cc1)C(=O)NCCCOCCCCOCCCNc2cccc3C(=O)N([C@@H]4CCC(=O)NC4=O)C(=O)c23" X2U SMILES CACTVS 3.385 "N[S](=O)(=O)c1ccc(cc1)C(=O)NCCCOCCCCOCCCNc2cccc3C(=O)N([CH]4CCC(=O)NC4=O)C(=O)c23" X2U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCCOCCCCOCCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)[C@@H]4CCC(=O)NC4=O" X2U SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCCOCCCCOCCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)C4CCC(=O)NC4=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X2U "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-{4-[3-({2-[(3R)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}amino)propoxy]butoxy}propyl)-4-sulfamoylbenzamide" X2U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[4-[3-[[2-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]amino]propoxy]butoxy]propyl]-4-sulfamoyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X2U "Create component" 2022-10-26 RCSB X2U "Initial release" 2023-02-22 RCSB #