data_X2V # _chem_comp.id X2V _chem_comp.name "4-[(6-cyanonaphthalen-1-yl)oxy]-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H16 F N3 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-23 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 497.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X2V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KRE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X2V C1 C1 C 0 1 Y N N 473.341 -16.114 128.489 -5.307 2.431 -0.060 C1 X2V 1 X2V C2 C2 C 0 1 Y N N 473.460 -17.114 127.522 -4.739 1.594 -1.038 C2 X2V 2 X2V C4 C3 C 0 1 Y N N 472.164 -15.797 125.957 -2.550 2.095 -0.210 C4 X2V 3 X2V O5 O1 O 0 1 N N N 470.740 -22.775 125.441 -3.074 -5.372 -1.593 O5 X2V 4 X2V C7 C4 C 0 1 Y N N 472.535 -15.558 121.566 1.602 1.716 -1.918 C7 X2V 5 X2V C8 C5 C 0 1 Y N N 472.191 -15.354 120.239 2.968 1.512 -1.863 C8 X2V 6 X2V C10 C6 C 0 1 Y N N 470.164 -16.618 120.556 2.642 -0.275 -0.290 C10 X2V 7 X2V C11 C7 C 0 1 Y N N 470.511 -16.825 121.877 1.273 -0.076 -0.349 C11 X2V 8 X2V C12 C8 C 0 1 N N N 468.442 -17.659 122.786 1.044 -1.868 1.198 C12 X2V 9 X2V C14 C9 C 0 1 N N N 469.158 -19.722 124.537 -1.987 -2.761 0.457 C14 X2V 10 X2V C16 C10 C 0 1 N N N 470.092 -21.905 124.837 -2.397 -4.749 -0.794 C16 X2V 11 X2V C17 C11 C 0 1 N N N 468.839 -21.331 122.789 -0.546 -4.619 0.625 C17 X2V 12 X2V C20 C12 C 0 1 Y N N 471.287 -13.618 126.623 -2.259 3.612 1.679 C20 X2V 13 X2V C21 C13 C 0 1 Y N N 472.008 -14.790 126.948 -3.109 2.946 0.777 C21 X2V 14 X2V C22 C14 C 0 1 Y N N 472.605 -14.978 128.216 -4.501 3.106 0.842 C22 X2V 15 X2V N N1 N 0 1 N N N 474.702 -16.293 130.678 -7.857 2.716 0.048 N X2V 16 X2V C C15 C 0 1 N N N 474.085 -16.211 129.720 -6.729 2.590 0.000 C X2V 17 X2V O O2 O 0 1 N N N 471.829 -16.555 123.739 -0.592 1.132 -1.211 O X2V 18 X2V C13 C16 C 0 1 N N N 467.997 -19.059 122.465 -0.044 -2.641 1.946 C13 X2V 19 X2V C15 C17 C 0 1 N N N 469.848 -20.579 125.305 -2.754 -3.428 -0.431 C15 X2V 20 X2V C18 C18 C 0 1 Y N N 470.907 -14.416 124.395 -0.352 2.607 0.630 C18 X2V 21 X2V C19 C19 C 0 1 Y N N 470.757 -13.449 125.377 -0.912 3.437 1.599 C19 X2V 22 X2V C3 C20 C 0 1 Y N N 472.895 -16.962 126.291 -3.394 1.428 -1.114 C3 X2V 23 X2V C5 C21 C 0 1 Y N N 471.599 -15.567 124.675 -1.150 1.938 -0.271 C5 X2V 24 X2V C6 C22 C 0 1 Y N N 471.683 -16.279 122.390 0.751 0.927 -1.161 C6 X2V 25 X2V C9 C23 C 0 1 Y N N 471.003 -15.870 119.745 3.490 0.517 -1.050 C9 X2V 26 X2V F F1 F 0 1 N N N 470.045 -13.769 116.952 5.354 0.349 1.469 F X2V 27 X2V N1 N2 N 0 1 N N N 468.674 -20.065 123.301 -0.878 -3.365 0.983 N1 X2V 28 X2V N2 N3 N 0 1 N N N 469.558 -22.186 123.592 -1.299 -5.312 -0.249 N2 X2V 29 X2V O1 O3 O 0 1 N N N 470.602 -15.589 118.410 4.834 0.318 -0.998 O1 X2V 30 X2V O2 O4 O 0 1 N N N 468.957 -13.896 119.061 4.812 2.348 0.199 O2 X2V 31 X2V O3 O5 O 0 1 N N N 468.420 -15.472 117.235 6.926 1.086 -0.230 O3 X2V 32 X2V O4 O6 O 0 1 N N N 469.872 -17.604 122.794 0.439 -0.859 0.387 O4 X2V 33 X2V O6 O7 O 0 1 N N N 468.336 -21.691 121.734 0.444 -5.137 1.105 O6 X2V 34 X2V S S1 S 0 1 N N N 469.318 -14.697 117.972 5.540 1.134 0.076 S X2V 35 X2V H1 H1 H 0 1 N N N 474.005 -18.017 127.752 -5.381 1.078 -1.736 H1 X2V 36 X2V H2 H2 H 0 1 N N N 473.460 -15.159 121.956 1.198 2.494 -2.549 H2 X2V 37 X2V H3 H3 H 0 1 N N N 472.848 -14.794 119.590 3.630 2.128 -2.454 H3 X2V 38 X2V H4 H4 H 0 1 N N N 469.250 -17.034 120.160 3.049 -1.052 0.340 H4 X2V 39 X2V H5 H5 H 0 1 N N N 468.052 -16.967 122.025 1.717 -1.401 1.917 H5 X2V 40 X2V H6 H6 H 0 1 N N N 468.058 -17.370 123.776 1.607 -2.554 0.565 H6 X2V 41 X2V H7 H7 H 0 1 N N N 468.977 -18.724 124.907 -2.244 -1.753 0.746 H7 X2V 42 X2V H8 H8 H 0 1 N N N 471.154 -12.848 127.369 -2.675 4.262 2.434 H8 X2V 43 X2V H9 H9 H 0 1 N N N 472.484 -14.224 128.980 -4.940 3.751 1.589 H9 X2V 44 X2V H10 H10 H 0 1 N N N 466.912 -19.133 122.631 0.420 -3.350 2.631 H10 X2V 45 X2V H11 H11 H 0 1 N N N 468.221 -19.268 121.409 -0.664 -1.943 2.510 H11 X2V 46 X2V H12 H12 H 0 1 N N N 470.216 -20.267 126.271 -3.630 -2.961 -0.857 H12 X2V 47 X2V H13 H13 H 0 1 N N N 470.481 -14.264 123.414 0.720 2.488 0.585 H13 X2V 48 X2V H14 H14 H 0 1 N N N 470.210 -12.545 125.152 -0.266 3.951 2.295 H14 X2V 49 X2V H15 H15 H 0 1 N N N 473.007 -17.746 125.556 -2.972 0.779 -1.867 H15 X2V 50 X2V H16 H16 H 0 1 N N N 469.711 -23.109 123.238 -1.046 -6.215 -0.496 H16 X2V 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X2V F S SING N N 1 X2V O3 S DOUB N N 2 X2V S O1 SING N N 3 X2V S O2 DOUB N N 4 X2V O1 C9 SING N N 5 X2V C9 C8 DOUB Y N 6 X2V C9 C10 SING Y N 7 X2V C8 C7 SING Y N 8 X2V C10 C11 DOUB Y N 9 X2V C7 C6 DOUB Y N 10 X2V O6 C17 DOUB N N 11 X2V C11 C6 SING Y N 12 X2V C11 O4 SING N N 13 X2V C6 O SING N N 14 X2V C13 C12 SING N N 15 X2V C13 N1 SING N N 16 X2V C12 O4 SING N N 17 X2V C17 N1 SING N N 18 X2V C17 N2 SING N N 19 X2V N1 C14 SING N N 20 X2V N2 C16 SING N N 21 X2V O C5 SING N N 22 X2V C18 C5 DOUB Y N 23 X2V C18 C19 SING Y N 24 X2V C14 C15 DOUB N N 25 X2V C5 C4 SING Y N 26 X2V C16 C15 SING N N 27 X2V C16 O5 DOUB N N 28 X2V C19 C20 DOUB Y N 29 X2V C4 C3 DOUB Y N 30 X2V C4 C21 SING Y N 31 X2V C3 C2 SING Y N 32 X2V C20 C21 SING Y N 33 X2V C21 C22 DOUB Y N 34 X2V C2 C1 DOUB Y N 35 X2V C22 C1 SING Y N 36 X2V C1 C SING N N 37 X2V C N TRIP N N 38 X2V C2 H1 SING N N 39 X2V C7 H2 SING N N 40 X2V C8 H3 SING N N 41 X2V C10 H4 SING N N 42 X2V C12 H5 SING N N 43 X2V C12 H6 SING N N 44 X2V C14 H7 SING N N 45 X2V C20 H8 SING N N 46 X2V C22 H9 SING N N 47 X2V C13 H10 SING N N 48 X2V C13 H11 SING N N 49 X2V C15 H12 SING N N 50 X2V C18 H13 SING N N 51 X2V C19 H14 SING N N 52 X2V C3 H15 SING N N 53 X2V N2 H16 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X2V SMILES ACDLabs 12.01 "c4(C#N)ccc1c(cccc1Oc2ccc(cc2OCCN3C=CC(=O)NC3=O)OS(F)(=O)=O)c4" X2V InChI InChI 1.03 "InChI=1S/C23H16FN3O7S/c24-35(30,31)34-17-5-7-20(21(13-17)32-11-10-27-9-8-22(28)26-23(27)29)33-19-3-1-2-16-12-15(14-25)4-6-18(16)19/h1-9,12-13H,10-11H2,(H,26,28,29)" X2V InChIKey InChI 1.03 XVIQCYUMLUTRMI-UHFFFAOYSA-N X2V SMILES_CANONICAL CACTVS 3.385 "F[S](=O)(=O)Oc1ccc(Oc2cccc3cc(ccc23)C#N)c(OCCN4C=CC(=O)NC4=O)c1" X2V SMILES CACTVS 3.385 "F[S](=O)(=O)Oc1ccc(Oc2cccc3cc(ccc23)C#N)c(OCCN4C=CC(=O)NC4=O)c1" X2V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc(ccc2c(c1)Oc3ccc(cc3OCCN4C=CC(=O)NC4=O)OS(=O)(=O)F)C#N" X2V SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(ccc2c(c1)Oc3ccc(cc3OCCN4C=CC(=O)NC4=O)OS(=O)(=O)F)C#N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X2V "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(6-cyanonaphthalen-1-yl)oxy]-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate" X2V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[2-[2-(6-cyanonaphthalen-1-yl)oxy-5-fluorosulfonyloxy-phenoxy]ethyl]-2,4-bis(oxidanylidene)pyrimidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X2V "Create component" 2020-11-23 RCSB X2V "Initial release" 2021-01-13 RCSB ##