data_X2Y # _chem_comp.id X2Y _chem_comp.name "2,4-di-O-sulfo-alpha-L-fucopyranose" _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O11 S2" _chem_comp.mon_nstd_parent_comp_id FUC _chem_comp.pdbx_synonyms "6-deoxy-2,4-di-O-sulfo-alpha-L-galactopyranose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-23 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.283 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X2Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X2Y C5 C1 C 0 1 N N S 0.781 -16.466 2.105 1.185 2.148 -0.135 C5 X2Y 1 X2Y C4 C2 C 0 1 N N S 0.039 -17.818 2.113 1.389 0.708 -0.612 C4 X2Y 2 X2Y C3 C3 C 0 1 N N R 0.684 -18.714 1.031 0.080 0.188 -1.215 C3 X2Y 3 X2Y C2 C4 C 0 1 N N S 0.682 -18.034 -0.329 -1.032 0.303 -0.168 C2 X2Y 4 X2Y C1 C5 C 0 1 N N R 1.209 -16.578 -0.258 -1.142 1.758 0.292 C1 X2Y 5 X2Y O5 O1 O 0 1 N N N 0.656 -15.851 0.815 0.117 2.188 0.813 O5 X2Y 6 X2Y C6 C6 C 0 1 N N N 0.255 -15.474 3.151 2.471 2.654 0.523 C6 X2Y 7 X2Y O3 O2 O 0 1 N N N 0.082 -20.018 1.023 0.240 -1.179 -1.598 O3 X2Y 8 X2Y S1 S1 S 0 1 N N N 1.100 -18.494 -2.924 -3.198 -0.827 0.232 S1 X2Y 9 X2Y O6 O3 O 0 1 N N N -0.340 -18.278 -3.058 -3.792 0.232 1.150 O6 X2Y 10 X2Y O7 O4 O 0 1 N N N 1.594 -19.685 -3.615 -2.369 -1.644 1.047 O7 X2Y 11 X2Y O8 O5 O 0 1 N N N 1.909 -17.297 -3.158 -4.276 -1.339 -0.539 O8 X2Y 12 X2Y O2 O6 O 0 1 N N N 1.331 -18.842 -1.315 -2.273 -0.112 -0.742 O2 X2Y 13 X2Y S2 S2 S 0 1 N N N -2.516 -18.279 2.758 2.929 -1.050 0.204 S2 X2Y 14 X2Y O9 O7 O 0 1 N N N -3.754 -17.642 2.306 2.747 -1.513 -1.127 O9 X2Y 15 X2Y O10 O8 O 0 1 N N N -2.437 -19.705 2.440 3.034 -1.920 1.323 O10 X2Y 16 X2Y O11 O9 O 0 1 N N N -2.144 -17.949 4.134 4.195 -0.206 0.196 O11 X2Y 17 X2Y O4 O10 O 0 1 N N N -1.344 -17.576 1.818 1.765 -0.113 0.495 O4 X2Y 18 X2Y H5 H1 H 0 1 N N N 1.843 -16.658 2.318 0.939 2.782 -0.987 H5 X2Y 19 X2Y H4 H2 H 0 1 N N N 0.154 -18.294 3.098 2.173 0.682 -1.368 H4 X2Y 20 X2Y H3 H3 H 0 1 N N N 1.738 -18.836 1.319 -0.181 0.784 -2.089 H3 X2Y 21 X2Y H2 H4 H 0 1 N N N -0.374 -17.953 -0.625 -0.795 -0.332 0.686 H2 X2Y 22 X2Y H1 H5 H 0 1 N N N 0.925 -16.087 -1.201 -1.903 1.838 1.069 H1 X2Y 23 X2Y H61 H7 H 0 1 N N N 0.338 -15.919 4.154 3.305 2.534 -0.169 H61 X2Y 24 X2Y H63 H8 H 0 1 N N N 0.849 -14.549 3.110 2.359 3.708 0.776 H63 X2Y 25 X2Y H62 H9 H 0 1 N N N -0.799 -15.243 2.939 2.665 2.081 1.429 H62 X2Y 26 X2Y HO3 H6 H 0 1 N Y N -0.753 -19.985 1.475 -0.553 -1.573 -1.988 HO3 X2Y 27 X2Y O1 O11 O 0 1 N Y N 2.603 -16.621 -0.173 -1.505 2.583 -0.817 O1 X2Y 28 X2Y H9 H10 H 0 1 N N N -0.717 -18.971 -3.588 -4.401 -0.119 1.814 H9 X2Y 29 X2Y H11 H11 H 0 1 N N N -2.791 -17.361 4.505 5.002 -0.708 0.018 H11 X2Y 30 X2Y HO1 H12 H 0 1 N Y N 2.945 -15.736 -0.128 -1.593 3.520 -0.599 HO1 X2Y 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X2Y O7 S1 DOUB N N 1 X2Y O8 S1 DOUB N N 2 X2Y O6 S1 SING N N 3 X2Y S1 O2 SING N N 4 X2Y O2 C2 SING N N 5 X2Y C2 C1 SING N N 6 X2Y C2 C3 SING N N 7 X2Y C1 O5 SING N N 8 X2Y O5 C5 SING N N 9 X2Y O3 C3 SING N N 10 X2Y C3 C4 SING N N 11 X2Y O4 C4 SING N N 12 X2Y O4 S2 SING N N 13 X2Y C5 C4 SING N N 14 X2Y C5 C6 SING N N 15 X2Y O9 S2 DOUB N N 16 X2Y O10 S2 DOUB N N 17 X2Y S2 O11 SING N N 18 X2Y C5 H5 SING N N 19 X2Y C4 H4 SING N N 20 X2Y C3 H3 SING N N 21 X2Y C2 H2 SING N N 22 X2Y C1 H1 SING N N 23 X2Y C6 H61 SING N N 24 X2Y C6 H63 SING N N 25 X2Y C6 H62 SING N N 26 X2Y O3 HO3 SING N N 27 X2Y C1 O1 SING N N 28 X2Y O6 H9 SING N N 29 X2Y O11 H11 SING N N 30 X2Y O1 HO1 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X2Y SMILES ACDLabs 12.01 "C1(C(C(C(C(O1)O)OS(O)(=O)=O)O)OS(O)(=O)=O)C" X2Y InChI InChI 1.03 "InChI=1S/C6H12O11S2/c1-2-4(16-18(9,10)11)3(7)5(6(8)15-2)17-19(12,13)14/h2-8H,1H3,(H,9,10,11)(H,12,13,14)/t2-,3+,4+,5-,6+/m0/s1" X2Y InChIKey InChI 1.03 DEUKUMHVPJKBEV-SXUWKVJYSA-N X2Y SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O)[C@@H](O[S](O)(=O)=O)[C@H](O)[C@@H]1O[S](O)(=O)=O" X2Y SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O)[CH]1O[S](O)(=O)=O" X2Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)OS(=O)(=O)O)O)OS(=O)(=O)O" X2Y SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)OS(=O)(=O)O)O)OS(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X2Y "SYSTEMATIC NAME" ACDLabs 12.01 "6-deoxy-2,4-di-O-sulfo-alpha-L-galactopyranose" X2Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S},3~{S},4~{R},5~{S},6~{R})-2-methyl-4,6-bis(oxidanyl)-5-sulfooxy-oxan-3-yl] hydrogen sulfate" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support X2Y "CARBOHYDRATE ISOMER" L PDB ? X2Y "CARBOHYDRATE RING" pyranose PDB ? X2Y "CARBOHYDRATE ANOMER" alpha PDB ? X2Y "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X2Y _pdbx_chem_comp_synonyms.name "6-deoxy-2,4-di-O-sulfo-alpha-L-galactopyranose" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_related.comp_id X2Y _pdbx_chem_comp_related.related_comp_id FUC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 X2Y C5 FUC C5 "Carbohydrate core" 2 X2Y C4 FUC C4 "Carbohydrate core" 3 X2Y C3 FUC C3 "Carbohydrate core" 4 X2Y C2 FUC C2 "Carbohydrate core" 5 X2Y C1 FUC C1 "Carbohydrate core" 6 X2Y O5 FUC O5 "Carbohydrate core" 7 X2Y C6 FUC C6 "Carbohydrate core" 8 X2Y O3 FUC O3 "Carbohydrate core" 9 X2Y O2 FUC O2 "Carbohydrate core" 10 X2Y O4 FUC O4 "Carbohydrate core" 11 X2Y H5 FUC H5 "Carbohydrate core" 12 X2Y H4 FUC H4 "Carbohydrate core" 13 X2Y H3 FUC H3 "Carbohydrate core" 14 X2Y H2 FUC H2 "Carbohydrate core" 15 X2Y H1 FUC H1 "Carbohydrate core" 16 X2Y H61 FUC H61 "Carbohydrate core" 17 X2Y H63 FUC H63 "Carbohydrate core" 18 X2Y H62 FUC H62 "Carbohydrate core" 19 X2Y HO3 FUC HO3 "Carbohydrate core" 20 X2Y O1 FUC O1 "Carbohydrate core" 21 X2Y HO1 FUC HO1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X2Y "Create component" 2020-11-23 RCSB X2Y "Modify parent residue" 2020-12-01 RCSB X2Y "Initial release" 2020-12-16 RCSB ##