data_X34 # _chem_comp.id X34 _chem_comp.name 4-O-sulfo-alpha-L-fucopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O8 S" _chem_comp.mon_nstd_parent_comp_id FUC _chem_comp.pdbx_synonyms 6-deoxy-4-O-sulfo-alpha-L-galactopyranose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-23 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.220 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X34 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X34 C5 C1 C 0 1 N N S 1.349 -22.041 -0.552 0.827 1.603 0.459 C5 X34 1 X34 C4 C2 C 0 1 N N S 0.427 -23.267 -0.311 0.015 0.314 0.610 C4 X34 2 X34 C3 C3 C 0 1 N N S -0.709 -22.834 0.635 0.974 -0.876 0.702 C3 X34 3 X34 C2 C4 C 0 1 N N S -0.102 -22.241 1.930 1.868 -0.895 -0.541 C2 X34 4 X34 C1 C5 C 0 1 N N R 0.836 -21.064 1.586 2.609 0.440 -0.648 C1 X34 5 X34 O5 O1 O 0 1 N N N 1.836 -21.481 0.683 1.660 1.507 -0.699 O5 X34 6 X34 C6 C6 C 0 1 N N N 2.567 -22.341 -1.436 -0.125 2.791 0.305 C6 X34 7 X34 O3 O2 O 0 1 N N N -1.629 -23.892 0.872 0.223 -2.091 0.770 O3 X34 8 X34 O2 O3 O 0 1 N N N -1.059 -21.893 2.923 2.816 -1.959 -0.431 O2 X34 9 X34 S1 S1 S 0 1 N N N 1.254 -25.797 -0.585 -2.266 -0.245 -0.173 S1 X34 10 X34 O6 O4 O 0 1 N N N 2.132 -26.628 0.241 -2.959 0.996 0.370 O6 X34 11 X34 O7 O5 O 0 1 N N N 1.817 -25.454 -1.891 -2.172 -1.160 0.911 O7 X34 12 X34 O8 O6 O 0 1 N N N -0.126 -26.281 -0.647 -2.909 -0.559 -1.401 O8 X34 13 X34 O4 O7 O 0 1 N N N 1.177 -24.356 0.244 -0.840 0.152 -0.524 O4 X34 14 X34 H5 H1 H 0 1 N N N 0.747 -21.279 -1.069 1.448 1.747 1.342 H5 X34 15 X34 H4 H2 H 0 1 N N N -0.013 -23.565 -1.274 -0.589 0.368 1.516 H4 X34 16 X34 H3 H3 H 0 1 N N N -1.246 -22.016 0.133 1.591 -0.779 1.596 H3 X34 17 X34 H2 H4 H 0 1 N N N 0.540 -23.028 2.352 1.254 -1.045 -1.429 H2 X34 18 X34 H1 H5 H 0 1 N N N 1.303 -20.721 2.521 3.214 0.449 -1.554 H9 X34 19 X34 H63 H7 H 0 1 N N N 3.166 -21.427 -1.558 -0.823 2.808 1.142 H8 X34 20 X34 H62 H8 H 0 1 N N N 3.181 -23.121 -0.962 0.449 3.718 0.293 H7 X34 21 X34 H61 H9 H 0 1 N N N 2.227 -22.691 -2.422 -0.679 2.695 -0.629 H6 X34 22 X34 HO3 H10 H 0 1 N Y N -2.314 -23.591 1.457 0.768 -2.887 0.831 HO3 X34 23 X34 HO2 H11 H 0 1 N Y N -0.613 -21.538 3.683 3.416 -2.031 -1.186 HO2 X34 24 X34 O1 O8 O 0 1 N Y N 0.082 -20.018 1.023 3.454 0.609 0.492 O1 X34 25 X34 H6 H6 H 0 1 N N N 1.636 -27.354 0.600 -3.880 0.851 0.627 H1 X34 26 X34 HO1 H12 H 0 1 N Y N -0.588 -19.744 1.638 3.955 1.436 0.491 HO1 X34 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X34 O7 S1 DOUB N N 1 X34 C6 C5 SING N N 2 X34 O8 S1 DOUB N N 3 X34 S1 O6 SING N N 4 X34 S1 O4 SING N N 5 X34 C5 C4 SING N N 6 X34 C5 O5 SING N N 7 X34 C4 O4 SING N N 8 X34 C4 C3 SING N N 9 X34 C3 O3 SING N N 10 X34 C3 C2 SING N N 11 X34 O5 C1 SING N N 12 X34 C1 C2 SING N N 13 X34 C2 O2 SING N N 14 X34 C5 H5 SING N N 15 X34 C4 H4 SING N N 16 X34 C3 H3 SING N N 17 X34 C2 H2 SING N N 18 X34 C1 H1 SING N N 19 X34 C6 H63 SING N N 20 X34 C6 H62 SING N N 21 X34 C6 H61 SING N N 22 X34 O3 HO3 SING N N 23 X34 O2 HO2 SING N N 24 X34 C1 O1 SING N N 25 X34 O6 H6 SING N N 26 X34 O1 HO1 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X34 SMILES ACDLabs 12.01 "C1(C(OS(O)(=O)=O)C(O)C(O)C(O)O1)C" X34 InChI InChI 1.03 "InChI=1S/C6H12O8S/c1-2-5(14-15(10,11)12)3(7)4(8)6(9)13-2/h2-9H,1H3,(H,10,11,12)/t2-,3-,4-,5+,6+/m0/s1" X34 InChIKey InChI 1.03 MSBDOJFBVRPFGF-FQJSGBEDSA-N X34 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O[S](O)(=O)=O" X34 SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O[S](O)(=O)=O" X34 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)OS(=O)(=O)O" X34 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)O)O)OS(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X34 "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-4-O-sulfo-alpha-L-galactopyranose X34 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S},3~{S},4~{S},5~{S},6~{R})-2-methyl-4,5,6-tris(oxidanyl)oxan-3-yl] hydrogen sulfate" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support X34 "CARBOHYDRATE ISOMER" L PDB ? X34 "CARBOHYDRATE RING" pyranose PDB ? X34 "CARBOHYDRATE ANOMER" alpha PDB ? X34 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X34 _pdbx_chem_comp_synonyms.name 6-deoxy-4-O-sulfo-alpha-L-galactopyranose _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_related.comp_id X34 _pdbx_chem_comp_related.related_comp_id FUC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 X34 C5 FUC C5 "Carbohydrate core" 2 X34 C4 FUC C4 "Carbohydrate core" 3 X34 C3 FUC C3 "Carbohydrate core" 4 X34 C2 FUC C2 "Carbohydrate core" 5 X34 C1 FUC C1 "Carbohydrate core" 6 X34 O5 FUC O5 "Carbohydrate core" 7 X34 C6 FUC C6 "Carbohydrate core" 8 X34 O3 FUC O3 "Carbohydrate core" 9 X34 O2 FUC O2 "Carbohydrate core" 10 X34 O4 FUC O4 "Carbohydrate core" 11 X34 H5 FUC H5 "Carbohydrate core" 12 X34 H4 FUC H4 "Carbohydrate core" 13 X34 H3 FUC H3 "Carbohydrate core" 14 X34 H2 FUC H2 "Carbohydrate core" 15 X34 H1 FUC H1 "Carbohydrate core" 16 X34 H63 FUC H63 "Carbohydrate core" 17 X34 H62 FUC H62 "Carbohydrate core" 18 X34 H61 FUC H61 "Carbohydrate core" 19 X34 HO3 FUC HO3 "Carbohydrate core" 20 X34 HO2 FUC HO2 "Carbohydrate core" 21 X34 O1 FUC O1 "Carbohydrate core" 22 X34 HO1 FUC HO1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X34 "Create component" 2020-11-23 RCSB X34 "Modify parent residue" 2020-12-01 RCSB X34 "Initial release" 2020-12-16 RCSB ##