data_X38 # _chem_comp.id X38 _chem_comp.name "(4S)-5-amino-4-{1,3-dioxo-4-[(2-{2-[2-(4-sulfamoylbenzamido)ethoxy]ethoxy}ethyl)amino]-1,3-dihydro-2H-isoindol-2-yl}-5-oxopentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H31 N5 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-26 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.617 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X38 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EXG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X38 C02 C1 C 0 1 N N N 16.780 11.464 10.743 -4.997 0.023 0.093 C02 X38 1 X38 C04 C2 C 0 1 N N S 14.955 10.161 9.449 -7.064 -1.324 0.407 C04 X38 2 X38 C05 C3 C 0 1 N N N 14.359 10.590 8.102 -7.266 -2.608 -0.357 C05 X38 3 X38 C08 C4 C 0 1 N N N 13.950 9.571 10.433 -8.415 -0.639 0.618 C08 X38 4 X38 C09 C5 C 0 1 N N N 14.662 8.767 11.521 -8.228 0.598 1.499 C09 X38 5 X38 C10 C6 C 0 1 N N N 14.826 7.317 11.085 -9.559 1.273 1.707 C10 X38 6 X38 C13 C7 C 0 1 N N N 15.039 12.593 10.176 -6.444 0.024 -1.589 C13 X38 7 X38 C14 C8 C 0 1 Y N N 15.915 13.651 10.920 -5.320 0.882 -2.019 C14 X38 8 X38 C15 C9 C 0 1 Y N N 17.084 12.895 11.301 -4.401 0.877 -0.948 C15 X38 9 X38 C16 C10 C 0 1 Y N N 18.106 13.521 11.988 -3.216 1.603 -1.052 C16 X38 10 X38 C18 C11 C 0 1 N N N 20.361 12.463 11.480 -1.061 2.371 -0.120 C18 X38 11 X38 C19 C12 C 0 1 N N N 21.406 11.723 12.310 -0.241 2.207 1.161 C19 X38 12 X38 C21 C13 C 0 1 N N N 21.302 10.689 14.409 0.941 0.581 2.466 C21 X38 13 X38 C22 C14 C 0 1 N N N 19.991 9.935 14.640 1.318 -0.902 2.506 C22 X38 14 X38 C24 C15 C 0 1 N N N 19.599 7.774 13.787 2.591 -2.571 1.350 C24 X38 15 X38 C25 C16 C 0 1 N N N 18.824 7.020 12.678 3.504 -2.779 0.140 C25 X38 16 X38 C27 C17 C 0 1 N N N 17.097 5.668 13.877 5.696 -2.040 -0.627 C27 X38 17 X38 C28 C18 C 0 1 Y N N 16.649 4.401 14.581 6.940 -1.263 -0.445 C28 X38 18 X38 C29 C19 C 0 1 Y N N 17.541 3.364 14.788 7.935 -1.292 -1.423 C29 X38 19 X38 C30 C20 C 0 1 Y N N 17.134 2.236 15.478 9.093 -0.565 -1.247 C30 X38 20 X38 C31 C21 C 0 1 Y N N 15.845 2.165 15.967 9.271 0.193 -0.104 C31 X38 21 X38 C36 C22 C 0 1 Y N N 14.966 3.214 15.803 8.289 0.227 0.871 C36 X38 22 X38 C37 C23 C 0 1 Y N N 15.376 4.342 15.120 7.123 -0.491 0.704 C37 X38 23 X38 C39 C24 C 0 1 Y N N 18.007 14.878 12.329 -2.953 2.327 -2.217 C39 X38 24 X38 C40 C25 C 0 1 Y N N 16.858 15.618 11.954 -3.856 2.326 -3.257 C40 X38 25 X38 C41 C26 C 0 1 Y N N 15.820 14.990 11.251 -5.040 1.606 -3.164 C41 X38 26 X38 N03 N1 N 0 1 N N N 15.571 11.322 10.082 -6.180 -0.438 -0.353 N03 X38 27 X38 N06 N2 N 0 1 N N N 12.989 10.273 7.740 -8.048 -3.580 0.153 N06 X38 28 X38 N17 N3 N 0 1 N N N 19.274 12.766 12.388 -2.305 1.606 -0.006 N17 X38 29 X38 N26 N4 N 0 1 N N N 18.408 5.758 13.270 4.737 -2.009 0.320 N26 X38 30 X38 N33 N5 N 0 1 N N N 15.864 -0.732 16.151 10.498 2.617 -0.544 N33 X38 31 X38 O01 O1 O 0 1 N N N 17.542 10.562 10.878 -4.501 -0.228 1.173 O01 X38 32 X38 O07 O2 O 0 1 N N N 15.038 11.186 7.330 -6.724 -2.766 -1.431 O07 X38 33 X38 O11 O3 O 0 1 N N N 14.845 6.387 11.948 -9.637 2.386 2.453 O11 X38 34 X38 O12 O4 O 0 1 N N N 14.942 7.068 9.852 -10.555 0.813 1.202 O12 X38 35 X38 O20 O5 O 0 1 N N N 21.047 11.851 13.664 0.165 0.844 1.295 O20 X38 36 X38 O23 O6 O 0 1 N N N 19.711 9.149 13.509 2.178 -1.204 1.406 O23 X38 37 X38 O34 O7 O 0 1 N N N 13.815 0.713 16.927 10.903 1.315 1.513 O34 X38 38 X38 O35 O8 O 0 1 N N N 15.733 0.840 18.246 11.741 0.491 -0.693 O35 X38 39 X38 O38 O9 O 0 1 N N N 16.372 6.598 13.857 5.537 -2.707 -1.630 O38 X38 40 X38 O42 O10 O 0 1 N N N 13.980 12.875 9.716 -7.438 -0.225 -2.242 O42 X38 41 X38 S32 S1 S 0 1 N N N 15.277 0.698 16.857 10.754 1.119 0.114 S32 X38 42 X38 H041 H1 H 0 0 N N N 15.730 9.405 9.254 -6.613 -1.545 1.375 H041 X38 43 X38 H082 H2 H 0 0 N N N 13.382 10.388 10.902 -8.825 -0.339 -0.346 H082 X38 44 X38 H081 H3 H 0 0 N N N 13.259 8.909 9.890 -9.102 -1.331 1.105 H081 X38 45 X38 H091 H4 H 0 0 N N N 15.654 9.205 11.705 -7.818 0.298 2.464 H091 X38 46 X38 H092 H5 H 0 0 N N N 14.068 8.803 12.446 -7.541 1.290 1.012 H092 X38 47 X38 H182 H6 H 0 0 N N N 20.786 13.391 11.069 -1.295 3.425 -0.269 H182 X38 48 X38 H181 H7 H 0 0 N N N 20.005 11.826 10.657 -0.485 2.004 -0.970 H181 X38 49 X38 H192 H8 H 0 0 N N N 21.425 10.660 12.027 0.641 2.845 1.112 H192 X38 50 X38 H191 H9 H 0 0 N N N 22.399 12.165 12.142 -0.848 2.492 2.020 H191 X38 51 X38 H211 H10 H 0 0 N N N 22.003 10.046 13.857 0.358 0.831 3.352 H211 X38 52 X38 H212 H11 H 0 0 N N N 21.743 10.964 15.379 1.848 1.185 2.444 H212 X38 53 X38 H221 H12 H 0 0 N N N 19.175 10.655 14.800 1.833 -1.121 3.441 H221 X38 54 X38 H222 H13 H 0 0 N N N 20.088 9.288 15.524 0.414 -1.508 2.438 H222 X38 55 X38 H241 H14 H 0 0 N N N 19.067 7.647 14.741 1.714 -3.212 1.258 H241 X38 56 X38 H242 H15 H 0 0 N N N 20.608 7.345 13.870 3.133 -2.825 2.261 H242 X38 57 X38 H251 H16 H 0 0 N N N 19.476 6.839 11.811 3.747 -3.838 0.046 H251 X38 58 X38 H252 H17 H 0 0 N N N 17.946 7.602 12.362 2.994 -2.442 -0.762 H252 X38 59 X38 H291 H18 H 0 0 N N N 18.551 3.435 14.412 7.798 -1.884 -2.317 H291 X38 60 X38 H301 H19 H 0 0 N N N 17.820 1.416 15.633 9.864 -0.587 -2.004 H301 X38 61 X38 H361 H20 H 0 0 N N N 13.965 3.154 16.205 8.434 0.820 1.762 H361 X38 62 X38 H371 H21 H 0 0 N N N 14.703 5.179 15.006 6.355 -0.460 1.463 H371 X38 63 X38 H391 H22 H 0 0 N N N 18.805 15.358 12.876 -2.036 2.892 -2.302 H391 X38 64 X38 H401 H23 H 0 0 N N N 16.782 16.665 12.209 -3.642 2.891 -4.152 H401 X38 65 X38 H411 H24 H 0 0 N N N 14.944 15.554 10.967 -5.742 1.611 -3.986 H411 X38 66 X38 H061 H25 H 0 0 N N N 12.629 10.556 6.851 -8.481 -3.453 1.012 H061 X38 67 X38 H062 H26 H 0 0 N N N 12.406 9.772 8.380 -8.178 -4.406 -0.339 H062 X38 68 X38 H171 H27 H 0 0 N N N 18.934 11.885 12.716 -2.491 1.102 0.802 H171 X38 69 X38 H261 H28 H 0 0 N N N 19.018 4.966 13.258 4.864 -1.477 1.121 H261 X38 70 X38 H331 H29 H 0 0 N N N 15.531 -1.521 16.668 9.642 2.829 -0.948 H331 X38 71 X38 H1 H30 H 0 1 N N N 15.543 -0.793 15.206 11.203 3.283 -0.524 H1 X38 72 X38 H2 H31 H 0 1 N N N 14.954 5.551 11.511 -10.513 2.784 2.558 H2 X38 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X38 O07 C05 DOUB N N 1 X38 N06 C05 SING N N 2 X38 C05 C04 SING N N 3 X38 C04 N03 SING N N 4 X38 C04 C08 SING N N 5 X38 O42 C13 DOUB N N 6 X38 O12 C10 DOUB N N 7 X38 N03 C13 SING N N 8 X38 N03 C02 SING N N 9 X38 C13 C14 SING N N 10 X38 C08 C09 SING N N 11 X38 C02 O01 DOUB N N 12 X38 C02 C15 SING N N 13 X38 C14 C41 DOUB Y N 14 X38 C14 C15 SING Y N 15 X38 C10 C09 SING N N 16 X38 C10 O11 SING N N 17 X38 C41 C40 SING Y N 18 X38 C15 C16 DOUB Y N 19 X38 C18 C19 SING N N 20 X38 C18 N17 SING N N 21 X38 C40 C39 DOUB Y N 22 X38 C16 C39 SING Y N 23 X38 C16 N17 SING N N 24 X38 C19 O20 SING N N 25 X38 C25 N26 SING N N 26 X38 C25 C24 SING N N 27 X38 N26 C27 SING N N 28 X38 O23 C24 SING N N 29 X38 O23 C22 SING N N 30 X38 O20 C21 SING N N 31 X38 O38 C27 DOUB N N 32 X38 C27 C28 SING N N 33 X38 C21 C22 SING N N 34 X38 C28 C29 DOUB Y N 35 X38 C28 C37 SING Y N 36 X38 C29 C30 SING Y N 37 X38 C37 C36 DOUB Y N 38 X38 C30 C31 DOUB Y N 39 X38 C36 C31 SING Y N 40 X38 C31 S32 SING N N 41 X38 N33 S32 SING N N 42 X38 S32 O34 DOUB N N 43 X38 S32 O35 DOUB N N 44 X38 C04 H041 SING N N 45 X38 C08 H082 SING N N 46 X38 C08 H081 SING N N 47 X38 C09 H091 SING N N 48 X38 C09 H092 SING N N 49 X38 C18 H182 SING N N 50 X38 C18 H181 SING N N 51 X38 C19 H192 SING N N 52 X38 C19 H191 SING N N 53 X38 C21 H211 SING N N 54 X38 C21 H212 SING N N 55 X38 C22 H221 SING N N 56 X38 C22 H222 SING N N 57 X38 C24 H241 SING N N 58 X38 C24 H242 SING N N 59 X38 C25 H251 SING N N 60 X38 C25 H252 SING N N 61 X38 C29 H291 SING N N 62 X38 C30 H301 SING N N 63 X38 C36 H361 SING N N 64 X38 C37 H371 SING N N 65 X38 C39 H391 SING N N 66 X38 C40 H401 SING N N 67 X38 C41 H411 SING N N 68 X38 N06 H061 SING N N 69 X38 N06 H062 SING N N 70 X38 N17 H171 SING N N 71 X38 N26 H261 SING N N 72 X38 N33 H331 SING N N 73 X38 N33 H1 SING N N 74 X38 O11 H2 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X38 SMILES ACDLabs 12.01 "NS(=O)(=O)c1ccc(cc1)C(=O)NCCOCCOCCNc1cccc2C(=O)N(C(=O)c21)C(CCC(=O)O)C(N)=O" X38 InChI InChI 1.06 "InChI=1S/C26H31N5O10S/c27-23(34)20(8-9-21(32)33)31-25(36)18-2-1-3-19(22(18)26(31)37)29-10-12-40-14-15-41-13-11-30-24(35)16-4-6-17(7-5-16)42(28,38)39/h1-7,20,29H,8-15H2,(H2,27,34)(H,30,35)(H,32,33)(H2,28,38,39)/t20-/m0/s1" X38 InChIKey InChI 1.06 WPQDVFZMJJMLNI-FQEVSTJZSA-N X38 SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H](CCC(O)=O)N1C(=O)c2cccc(NCCOCCOCCNC(=O)c3ccc(cc3)[S](N)(=O)=O)c2C1=O" X38 SMILES CACTVS 3.385 "NC(=O)[CH](CCC(O)=O)N1C(=O)c2cccc(NCCOCCOCCNC(=O)c3ccc(cc3)[S](N)(=O)=O)c2C1=O" X38 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCOCCOCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)[C@@H](CCC(=O)O)C(=O)N" X38 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCOCCOCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)C(CCC(=O)O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X38 "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-5-amino-4-{1,3-dioxo-4-[(2-{2-[2-(4-sulfamoylbenzamido)ethoxy]ethoxy}ethyl)amino]-1,3-dihydro-2H-isoindol-2-yl}-5-oxopentanoic acid" X38 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S})-5-azanyl-4-[1,3-bis(oxidanylidene)-4-[2-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethoxy]ethylamino]isoindol-2-yl]-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X38 "Create component" 2022-10-26 RCSB X38 "Initial release" 2023-02-22 RCSB #