data_X3D # _chem_comp.id X3D _chem_comp.name "(14S,17R)-20-amino-17-hydroxy-11,17-dioxo-12,16,18-trioxa-17lambda~5~-phosphaicosan-14-yl tetradecanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H60 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-26 _chem_comp.pdbx_modified_date 2023-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 593.773 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X3D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EXH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X3D C17 C1 C 0 1 N N N 16.954 1.230 -39.054 -0.702 3.246 -1.158 C17 X3D 1 X3D C12 C2 C 0 1 N N N 18.638 -2.581 -42.347 4.143 0.705 -1.250 C12 X3D 2 X3D C16 C3 C 0 1 N N S 17.586 0.241 -40.030 -0.372 2.189 -2.214 C16 X3D 3 X3D C11 C4 C 0 1 N N N 19.943 -2.183 -43.029 5.068 -0.351 -0.642 C11 X3D 4 X3D C28 C5 C 0 1 N N N 20.884 1.643 -39.811 -3.630 0.491 -1.939 C28 X3D 5 X3D C22 C6 C 0 1 N N N 11.152 -0.268 -40.255 -4.608 1.900 3.719 C22 X3D 6 X3D C21 C7 C 0 1 N N N 11.878 1.050 -39.987 -3.767 3.036 3.134 C21 X3D 7 X3D C36 C8 C 0 1 N N N 26.097 -0.222 -47.298 -12.239 -4.128 0.076 C36 X3D 8 X3D C35 C9 C 0 1 N N N 25.383 -0.482 -45.974 -10.965 -3.536 0.684 C35 X3D 9 X3D C31 C10 C 0 1 N N N 23.418 1.067 -41.938 -6.654 -1.223 -0.332 C31 X3D 10 X3D C14 C11 C 0 1 N N N 16.628 -1.251 -41.573 1.775 1.314 -1.664 C14 X3D 11 X3D C13 C12 C 0 1 N N N 17.483 -1.675 -42.763 2.686 0.274 -1.065 C13 X3D 12 X3D C10 C13 C 0 1 N N N 21.012 -3.264 -42.915 6.524 0.079 -0.827 C10 X3D 13 X3D C30 C14 C 0 1 N N N 23.109 2.143 -40.901 -5.772 -0.657 -1.448 C30 X3D 14 X3D C29 C15 C 0 1 N N N 21.619 2.470 -40.861 -4.498 -0.066 -0.840 C29 X3D 15 X3D C32 C16 C 0 1 N N N 24.627 1.417 -42.801 -7.928 -1.814 -0.940 C32 X3D 16 X3D C34 C17 C 0 1 N N N 25.731 0.561 -44.915 -10.083 -2.971 -0.432 C34 X3D 17 X3D C33 C18 C 0 1 N N N 25.160 0.198 -43.548 -8.809 -2.379 0.176 C33 X3D 18 X3D C37 C19 C 0 1 N N N 26.079 -1.447 -48.207 -13.121 -4.693 1.192 C37 X3D 19 X3D C38 C20 C 0 1 N N N 26.855 -1.213 -49.501 -14.394 -5.284 0.585 C38 X3D 20 X3D C01 C21 C 0 1 N N N 22.762 -8.841 -52.144 16.976 -3.479 1.473 C01 X3D 21 X3D C02 C22 C 0 1 N N N 23.508 -7.952 -51.152 16.051 -2.423 0.865 C02 X3D 22 X3D C03 C23 C 0 1 N N N 22.617 -7.491 -50.002 14.594 -2.854 1.050 C03 X3D 23 X3D C04 C24 C 0 1 N N N 23.347 -6.543 -49.054 13.669 -1.798 0.442 C04 X3D 24 X3D C05 C25 C 0 1 N N N 22.416 -5.939 -48.006 12.213 -2.228 0.627 C05 X3D 25 X3D C06 C26 C 0 1 N N N 23.166 -5.511 -46.748 11.288 -1.172 0.019 C06 X3D 26 X3D C07 C27 C 0 1 N N N 22.508 -4.313 -46.072 9.831 -1.603 0.204 C07 X3D 27 X3D C08 C28 C 0 1 N N N 22.618 -4.354 -44.551 8.906 -0.547 -0.404 C08 X3D 28 X3D C09 C29 C 0 1 N N N 22.136 -3.048 -43.924 7.450 -0.977 -0.219 C09 X3D 29 X3D C26 C30 C 0 1 N N N 18.907 0.736 -40.612 -1.670 1.578 -2.748 C26 X3D 30 X3D N23 N1 N 0 1 N N N 11.120 -0.535 -41.682 -3.721 0.850 4.236 N23 X3D 31 X3D O15 O1 O 0 1 N N N 16.699 0.062 -41.095 0.444 1.147 -1.618 O15 X3D 32 X3D O18 O2 O 0 1 N N N 15.758 0.681 -38.575 -1.518 2.663 -0.140 O18 X3D 33 X3D O20 O3 O 0 1 N N N 12.758 0.862 -38.916 -3.045 2.559 1.998 O20 X3D 34 X3D O24 O4 O 0 1 N N N 14.309 -0.081 -39.777 -2.786 4.689 0.670 O24 X3D 35 X3D O25 O5 O 0 1 N N N 14.189 1.690 -37.695 -0.808 3.939 2.046 O25 X3D 36 X3D O27 O6 O 0 1 N N N 19.488 1.671 -39.754 -2.454 1.064 -1.639 O27 X3D 37 X3D O39 O7 O 0 1 N N N 21.497 0.980 -39.046 -3.993 0.422 -3.089 O39 X3D 38 X3D O40 O8 O 0 1 N N N 15.908 -2.035 -41.055 2.243 2.299 -2.185 O40 X3D 39 X3D P19 P1 P 0 1 N N N 14.335 1.288 -39.142 -2.055 3.489 1.133 P19 X3D 40 X3D H1 H1 H 0 1 N N N 17.641 1.412 -38.214 0.221 3.618 -0.715 H1 X3D 41 X3D H2 H2 H 0 1 N N N 16.746 2.179 -39.570 -1.239 4.071 -1.626 H2 X3D 42 X3D H3 H3 H 0 1 N N N 18.394 -3.618 -42.622 4.305 1.660 -0.751 H3 X3D 43 X3D H4 H4 H 0 1 N N N 18.770 -2.512 -41.257 4.359 0.808 -2.313 H4 X3D 44 X3D H5 H5 H 0 1 N N N 17.762 -0.711 -39.507 0.175 2.654 -3.035 H5 X3D 45 X3D H6 H6 H 0 1 N N N 20.320 -1.262 -42.560 4.852 -0.455 0.421 H6 X3D 46 X3D H7 H7 H 0 1 N N N 19.742 -1.996 -44.094 4.905 -1.307 -1.140 H7 X3D 47 X3D H8 H8 H 0 1 N N N 10.122 -0.201 -39.874 -5.227 2.285 4.530 H8 X3D 48 X3D H9 H9 H 0 1 N N N 11.680 -1.086 -39.743 -5.248 1.484 2.940 H9 X3D 49 X3D H10 H10 H 0 1 N N N 12.442 1.352 -40.882 -4.421 3.854 2.832 H10 X3D 50 X3D H11 H11 H 0 1 N N N 11.147 1.832 -39.734 -3.065 3.393 3.888 H11 X3D 51 X3D H12 H12 H 0 1 N N N 27.142 0.051 -47.090 -12.783 -3.348 -0.457 H12 X3D 52 X3D H13 H13 H 0 1 N N N 25.596 0.611 -47.814 -11.974 -4.925 -0.617 H13 X3D 53 X3D H14 H14 H 0 1 N N N 24.297 -0.462 -46.148 -11.230 -2.738 1.378 H14 X3D 54 X3D H15 H15 H 0 1 N N N 25.676 -1.475 -45.603 -10.421 -4.316 1.217 H15 X3D 55 X3D H16 H16 H 0 1 N N N 22.542 0.945 -42.591 -6.110 -2.002 0.201 H16 X3D 56 X3D H17 H17 H 0 1 N N N 23.620 0.121 -41.415 -6.919 -0.425 0.361 H17 X3D 57 X3D H18 H18 H 0 1 N N N 17.894 -0.775 -43.243 2.524 -0.681 -1.563 H18 X3D 58 X3D H19 H19 H 0 1 N N N 16.849 -2.216 -43.480 2.470 0.171 -0.002 H19 X3D 59 X3D H20 H20 H 0 1 N N N 20.550 -4.245 -43.100 6.740 0.183 -1.890 H20 X3D 60 X3D H21 H21 H 0 1 N N N 21.434 -3.243 -41.900 6.687 1.035 -0.328 H21 X3D 61 X3D H22 H22 H 0 1 N N N 23.423 1.785 -39.910 -5.508 -1.455 -2.141 H22 X3D 62 X3D H23 H23 H 0 1 N N N 23.668 3.055 -41.155 -6.316 0.122 -1.981 H23 X3D 63 X3D H24 H24 H 0 1 N N N 21.495 3.537 -40.624 -3.954 -0.846 -0.307 H24 X3D 64 X3D H25 H25 H 0 1 N N N 21.182 2.261 -41.849 -4.763 0.732 -0.147 H25 X3D 65 X3D H26 H26 H 0 1 N N N 25.423 1.815 -42.155 -8.472 -1.034 -1.473 H26 X3D 66 X3D H27 H27 H 0 1 N N N 24.332 2.183 -43.533 -7.663 -2.612 -1.633 H27 X3D 67 X3D H28 H28 H 0 1 N N N 26.826 0.634 -44.835 -9.819 -3.769 -1.125 H28 X3D 68 X3D H29 H29 H 0 1 N N N 25.320 1.533 -45.225 -10.627 -2.191 -0.965 H29 X3D 69 X3D H30 H30 H 0 1 N N N 24.338 -0.519 -43.687 -8.266 -3.159 0.709 H30 X3D 70 X3D H31 H31 H 0 1 N N N 25.954 -0.267 -42.945 -9.074 -1.582 0.869 H31 X3D 71 X3D H32 H32 H 0 1 N N N 25.035 -1.687 -48.458 -12.576 -5.473 1.725 H32 X3D 72 X3D H33 H33 H 0 1 N N N 26.531 -2.294 -47.670 -13.385 -3.895 1.885 H33 X3D 73 X3D H34 H34 H 0 1 N N N 26.815 -2.120 -50.122 -14.130 -6.082 -0.109 H34 X3D 74 X3D H35 H35 H 0 1 N N N 26.407 -0.372 -50.050 -15.023 -5.687 1.379 H35 X3D 75 X3D H36 H36 H 0 1 N N N 27.903 -0.978 -49.263 -14.938 -4.505 0.051 H36 X3D 76 X3D H37 H37 H 0 1 N N N 23.445 -9.145 -52.950 16.813 -4.435 0.975 H37 X3D 77 X3D H38 H38 H 0 1 N N N 22.387 -9.735 -51.625 18.014 -3.173 1.341 H38 X3D 78 X3D H39 H39 H 0 1 N N N 21.916 -8.283 -52.572 16.760 -3.583 2.536 H39 X3D 79 X3D H40 H40 H 0 1 N N N 24.355 -8.518 -50.738 16.213 -1.468 1.364 H40 X3D 80 X3D H41 H41 H 0 1 N N N 23.884 -7.066 -51.685 16.267 -2.320 -0.198 H41 X3D 81 X3D H42 H42 H 0 1 N N N 21.741 -6.972 -50.418 14.432 -3.809 0.552 H42 X3D 82 X3D H43 H43 H 0 1 N N N 22.285 -8.373 -49.435 14.378 -2.957 2.113 H43 X3D 83 X3D H44 H44 H 0 1 N N N 24.143 -7.101 -48.540 13.832 -0.842 0.941 H44 X3D 84 X3D H45 H45 H 0 1 N N N 23.792 -5.728 -49.643 13.885 -1.694 -0.621 H45 X3D 85 X3D H46 H46 H 0 1 N N N 21.919 -5.058 -48.439 12.050 -3.184 0.128 H46 X3D 86 X3D H47 H47 H 0 1 N N N 21.660 -6.688 -47.730 11.997 -2.332 1.690 H47 X3D 87 X3D H48 H48 H 0 1 N N N 23.183 -6.353 -46.041 11.450 -0.216 0.518 H48 X3D 88 X3D H49 H49 H 0 1 N N N 24.197 -5.242 -47.023 11.504 -1.069 -1.044 H49 X3D 89 X3D H50 H50 H 0 1 N N N 22.994 -3.395 -46.434 9.669 -2.558 -0.294 H50 X3D 90 X3D H51 H51 H 0 1 N N N 21.443 -4.297 -46.346 9.615 -1.706 1.267 H51 X3D 91 X3D H52 H52 H 0 1 N N N 22.003 -5.183 -44.170 9.068 0.409 0.095 H52 X3D 92 X3D H53 H53 H 0 1 N N N 23.669 -4.519 -44.272 9.122 -0.443 -1.467 H53 X3D 93 X3D H54 H54 H 0 1 N N N 22.983 -2.569 -43.411 7.234 -1.081 0.844 H54 X3D 94 X3D H55 H55 H 0 1 N N N 21.770 -2.387 -44.723 7.287 -1.933 -0.717 H55 X3D 95 X3D H56 H56 H 0 1 N N N 19.591 -0.116 -40.739 -2.242 2.343 -3.273 H56 X3D 96 X3D H57 H57 H 0 1 N N N 18.721 1.205 -41.589 -1.433 0.765 -3.434 H57 X3D 97 X3D H58 H58 H 0 1 N N N 10.644 -1.398 -41.849 -3.074 1.224 4.913 H58 X3D 98 X3D H59 H59 H 0 1 N N N 10.639 0.207 -42.149 -4.253 0.087 4.628 H59 X3D 99 X3D H61 H61 H 0 1 N N N 14.065 0.914 -37.161 -0.282 3.202 2.385 H61 X3D 100 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X3D C01 C02 SING N N 1 X3D C02 C03 SING N N 2 X3D C03 C04 SING N N 3 X3D C38 C37 SING N N 4 X3D C04 C05 SING N N 5 X3D C37 C36 SING N N 6 X3D C05 C06 SING N N 7 X3D C36 C35 SING N N 8 X3D C06 C07 SING N N 9 X3D C07 C08 SING N N 10 X3D C35 C34 SING N N 11 X3D C34 C33 SING N N 12 X3D C08 C09 SING N N 13 X3D C09 C10 SING N N 14 X3D C33 C32 SING N N 15 X3D C11 C10 SING N N 16 X3D C11 C12 SING N N 17 X3D C32 C31 SING N N 18 X3D C13 C12 SING N N 19 X3D C13 C14 SING N N 20 X3D C31 C30 SING N N 21 X3D N23 C22 SING N N 22 X3D C14 O15 SING N N 23 X3D C14 O40 DOUB N N 24 X3D O15 C16 SING N N 25 X3D C30 C29 SING N N 26 X3D C29 C28 SING N N 27 X3D C26 C16 SING N N 28 X3D C26 O27 SING N N 29 X3D C22 C21 SING N N 30 X3D C16 C17 SING N N 31 X3D C21 O20 SING N N 32 X3D C28 O27 SING N N 33 X3D C28 O39 DOUB N N 34 X3D O24 P19 DOUB N N 35 X3D P19 O20 SING N N 36 X3D P19 O18 SING N N 37 X3D P19 O25 SING N N 38 X3D C17 O18 SING N N 39 X3D C17 H1 SING N N 40 X3D C17 H2 SING N N 41 X3D C12 H3 SING N N 42 X3D C12 H4 SING N N 43 X3D C16 H5 SING N N 44 X3D C11 H6 SING N N 45 X3D C11 H7 SING N N 46 X3D C22 H8 SING N N 47 X3D C22 H9 SING N N 48 X3D C21 H10 SING N N 49 X3D C21 H11 SING N N 50 X3D C36 H12 SING N N 51 X3D C36 H13 SING N N 52 X3D C35 H14 SING N N 53 X3D C35 H15 SING N N 54 X3D C31 H16 SING N N 55 X3D C31 H17 SING N N 56 X3D C13 H18 SING N N 57 X3D C13 H19 SING N N 58 X3D C10 H20 SING N N 59 X3D C10 H21 SING N N 60 X3D C30 H22 SING N N 61 X3D C30 H23 SING N N 62 X3D C29 H24 SING N N 63 X3D C29 H25 SING N N 64 X3D C32 H26 SING N N 65 X3D C32 H27 SING N N 66 X3D C34 H28 SING N N 67 X3D C34 H29 SING N N 68 X3D C33 H30 SING N N 69 X3D C33 H31 SING N N 70 X3D C37 H32 SING N N 71 X3D C37 H33 SING N N 72 X3D C38 H34 SING N N 73 X3D C38 H35 SING N N 74 X3D C38 H36 SING N N 75 X3D C01 H37 SING N N 76 X3D C01 H38 SING N N 77 X3D C01 H39 SING N N 78 X3D C02 H40 SING N N 79 X3D C02 H41 SING N N 80 X3D C03 H42 SING N N 81 X3D C03 H43 SING N N 82 X3D C04 H44 SING N N 83 X3D C04 H45 SING N N 84 X3D C05 H46 SING N N 85 X3D C05 H47 SING N N 86 X3D C06 H48 SING N N 87 X3D C06 H49 SING N N 88 X3D C07 H50 SING N N 89 X3D C07 H51 SING N N 90 X3D C08 H52 SING N N 91 X3D C08 H53 SING N N 92 X3D C09 H54 SING N N 93 X3D C09 H55 SING N N 94 X3D C26 H56 SING N N 95 X3D C26 H57 SING N N 96 X3D N23 H58 SING N N 97 X3D N23 H59 SING N N 98 X3D O25 H61 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X3D SMILES ACDLabs 12.01 "NCCOP(O)(=O)OCC(COC(=O)CCCCCCCCCC)OC(=O)CCCCCCCCCCCCC" X3D InChI InChI 1.06 "InChI=1S/C30H60NO8P/c1-3-5-7-9-11-13-14-15-17-19-21-23-30(33)39-28(27-38-40(34,35)37-25-24-31)26-36-29(32)22-20-18-16-12-10-8-6-4-2/h28H,3-27,31H2,1-2H3,(H,34,35)/t28-/m0/s1" X3D InChIKey InChI 1.06 BMOFTHAXXFOIRF-NDEPHWFRSA-N X3D SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCC)CO[P](O)(=O)OCCN" X3D SMILES CACTVS 3.385 "CCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCCCC)CO[P](O)(=O)OCCN" X3D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCC)COP(=O)(O)OCCN" X3D SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCCCC)COP(=O)(O)OCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X3D "SYSTEMATIC NAME" ACDLabs 12.01 "(14S,17R)-20-amino-17-hydroxy-11,17-dioxo-12,16,18-trioxa-17lambda~5~-phosphaicosan-14-yl tetradecanoate" X3D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-undecanoyloxy-propan-2-yl] tetradecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X3D "Create component" 2022-10-26 RCSB X3D "Initial release" 2023-03-22 RCSB #