data_X3E
# 
_chem_comp.id                                    X3E 
_chem_comp.name                                  "(2~{S},6~{R})-2,6-dimethyl-1,3-dioxane-4,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H12 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-31 
_chem_comp.pdbx_modified_date                    2023-10-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        148.157 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X3E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P7I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X3E O   O1  O 0 1 N N N -40.819 -4.413 11.273 -2.175 -1.302 -0.433 O   X3E 1  
X3E CAA C1  C 0 1 N N N -40.736 0.114  12.013 2.694  -1.232 0.222  CAA X3E 2  
X3E CAE C2  C 0 1 N N N -39.190 -1.538 8.123  0.024  2.073  0.722  CAE X3E 3  
X3E CAH C3  C 0 1 N N N -41.158 -2.140 11.234 0.204  -1.337 0.014  CAH X3E 4  
X3E CAI C4  C 0 1 N N R -40.561 -0.878 10.808 1.397  -0.427 0.321  CAI X3E 5  
X3E CAK C5  C 0 1 N N S -38.895 -2.026 9.480  0.227  1.426  -0.649 CAK X3E 6  
X3E CAL C6  C 0 1 N N N -40.849 -3.313 10.395 -1.073 -0.490 -0.021 CAL X3E 7  
X3E OAF O2  O 0 1 N N N -41.879 -3.543 9.463  -1.331 0.040  1.281  OAF X3E 8  
X3E OAG O3  O 0 1 N N N -39.189 -0.986 10.484 1.423  0.642  -0.630 OAG X3E 9  
X3E OAJ O4  O 0 1 N N N -39.585 -3.296 9.723  -0.894 0.582  -0.951 OAJ X3E 10 
X3E H1  H1  H 0 1 N N N -40.131 -4.287 11.916 -3.017 -0.829 -0.477 H1  X3E 11 
X3E H2  H2  H 0 1 N N N -41.803 0.199  12.266 2.796  -1.635 -0.785 H2  X3E 12 
X3E H3  H3  H 0 1 N N N -40.182 -0.266 12.884 3.542  -0.582 0.441  H3  X3E 13 
X3E H4  H4  H 0 1 N N N -40.346 1.104  11.733 2.669  -2.051 0.941  H4  X3E 14 
X3E H5  H5  H 0 1 N N N -38.667 -0.585 7.954  0.112  1.314  1.499  H5  X3E 15 
X3E H6  H6  H 0 1 N N N -38.850 -2.279 7.385  0.781  2.841  0.877  H6  X3E 16 
X3E H7  H7  H 0 1 N N N -40.274 -1.385 8.016  -0.967 2.526  0.767  H7  X3E 17 
X3E H8  H8  H 0 1 N N N -42.250 -2.010 11.243 0.350  -1.817 -0.953 H8  X3E 18 
X3E H9  H9  H 0 1 N N N -40.805 -2.353 12.254 0.116  -2.099 0.790  H9  X3E 19 
X3E H10 H10 H 0 1 N N N -41.122 -0.477 9.951  1.296  -0.019 1.327  H10 X3E 20 
X3E H11 H11 H 0 1 N N N -37.814 -2.227 9.526  0.312  2.203  -1.409 H11 X3E 21 
X3E H12 H12 H 0 1 N N N -42.716 -3.554 9.912  -2.126 0.588  1.332  H12 X3E 22 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X3E CAE CAK SING N N 1  
X3E OAF CAL SING N N 2  
X3E CAK OAJ SING N N 3  
X3E CAK OAG SING N N 4  
X3E OAJ CAL SING N N 5  
X3E CAL CAH SING N N 6  
X3E CAL O   SING N N 7  
X3E OAG CAI SING N N 8  
X3E CAI CAH SING N N 9  
X3E CAI CAA SING N N 10 
X3E O   H1  SING N N 11 
X3E CAA H2  SING N N 12 
X3E CAA H3  SING N N 13 
X3E CAA H4  SING N N 14 
X3E CAE H5  SING N N 15 
X3E CAE H6  SING N N 16 
X3E CAE H7  SING N N 17 
X3E CAH H8  SING N N 18 
X3E CAH H9  SING N N 19 
X3E CAI H10 SING N N 20 
X3E CAK H11 SING N N 21 
X3E OAF H12 SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X3E InChI            InChI                1.06  "InChI=1S/C6H12O4/c1-4-3-6(7,8)10-5(2)9-4/h4-5,7-8H,3H2,1-2H3/t4-,5+/m1/s1" 
X3E InChIKey         InChI                1.06  LLPWZEAIWVWWNV-UHNVWZDZSA-N                                                 
X3E SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CC(O)(O)O[C@@H](C)O1"                                              
X3E SMILES           CACTVS               3.385 "C[CH]1CC(O)(O)O[CH](C)O1"                                                  
X3E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC(O[C@H](O1)C)(O)O"                                               
X3E SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC(OC(O1)C)(O)O"                                                        
# 
_pdbx_chem_comp_identifier.comp_id           X3E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},6~{R})-2,6-dimethyl-1,3-dioxane-4,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X3E "Create component" 2023-05-31 PDBE 
X3E "Initial release"  2023-10-25 RCSB 
#