data_X3I # _chem_comp.id X3I _chem_comp.name "(5R)-5-{(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-9a,11a-dimethyl-7-[(prop-2-yn-1-yl)oxy]hexadecahydro-1H-cyclopenta[a]phenanthren-1-yl}-1-fluorohexan-2-one (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H43 F O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.638 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EWT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X3I C13 C1 C 0 1 N N N N N N -11.044 1.526 -8.626 -3.794 0.968 -1.856 C13 X3I 1 X3I C15 C2 C 0 1 N N N N N N -13.307 0.710 -9.204 -2.384 2.922 -1.196 C15 X3I 2 X3I C17 C3 C 0 1 N N N N N N -12.057 2.281 -11.238 -0.975 0.334 -1.593 C17 X3I 3 X3I C20 C4 C 0 1 N N N N N N -14.474 2.660 -13.088 1.383 1.600 -0.681 C20 X3I 4 X3I C21 C5 C 0 1 N N R N N N -13.918 4.998 -13.873 2.292 -0.494 0.335 C21 X3I 5 X3I C22 C6 C 0 1 N N R N N N -14.001 4.530 -15.154 3.518 -0.012 -0.444 C22 X3I 6 X3I C24 C7 C 0 1 N N N N N N -14.724 5.711 -15.988 4.776 -0.666 0.131 C24 X3I 7 X3I C26 C8 C 0 1 N N N N N N -15.085 7.056 -18.027 7.251 -0.736 0.002 C26 X3I 8 X3I C01 C9 C 0 1 N N S N N N -14.188 4.475 -11.420 0.140 0.299 1.085 C01 X3I 9 X3I C02 C10 C 0 1 N N R N N N -14.124 3.506 -10.222 -0.981 1.269 0.760 C02 X3I 10 X3I C03 C11 C 0 1 N N N N N N -14.696 4.145 -8.977 -1.868 1.489 1.986 C03 X3I 11 X3I C04 C12 C 0 1 N N N N N N -14.599 3.176 -7.704 -3.017 2.431 1.621 C04 X3I 12 X3I C05 C13 C 0 1 N N R N N N -13.105 2.608 -7.515 -3.851 1.812 0.495 C05 X3I 13 X3I C06 C14 C 0 1 N N N N N N -12.209 3.736 -7.008 -4.424 0.472 0.963 C06 X3I 14 X3I C07 C15 C 0 1 N N R N N N -10.785 3.191 -6.759 -5.256 -0.147 -0.163 C07 X3I 15 X3I C09 C16 C 0 1 N N N N N N -9.091 3.699 -5.184 -7.042 -1.736 -0.330 C09 X3I 16 X3I C12 C17 C 0 1 N N N N N N -10.189 2.670 -8.087 -4.369 -0.371 -1.389 C12 X3I 17 X3I C14 C18 C 0 1 N N S N N N -12.511 1.957 -8.816 -2.962 1.585 -0.730 C14 X3I 18 X3I C16 C19 C 0 1 N N S N N N -12.584 2.937 -10.008 -1.820 0.636 -0.361 C16 X3I 19 X3I C18 C20 C 0 1 N N N N N N -12.179 3.321 -12.571 0.239 -0.541 -1.239 C18 X3I 20 X3I C19 C21 C 0 1 N N R N N N -13.582 3.861 -12.749 1.034 0.198 -0.180 C19 X3I 21 X3I C23 C22 C 0 1 N N N N N N -12.566 4.259 -15.781 3.370 -0.397 -1.917 C23 X3I 22 X3I C25 C23 C 0 1 N N N N N N -14.176 5.972 -17.386 6.012 -0.092 -0.564 C25 X3I 23 X3I C27 C24 C 0 1 N N N N N N -16.217 6.533 -18.935 8.610 -0.341 -0.517 C27 X3I 24 X3I C29 C25 C 0 1 N N N N N N -15.414 5.645 -13.344 2.405 -0.081 1.824 C29 X3I 25 X3I C30 C26 C 0 1 N N N N N N -15.580 5.206 -11.828 1.136 0.763 2.154 C30 X3I 26 X3I O08 O1 O 0 1 N N N N N N -9.940 4.160 -6.223 -5.791 -1.398 0.272 O08 X3I 27 X3I O28 O2 O 0 1 N N N N N N -15.003 8.237 -17.795 7.156 -1.569 0.871 O28 X3I 28 X3I F1 F1 F 0 1 N Y N N N N -17.819 6.793 -18.214 9.596 -1.069 0.156 F1 X3I 29 X3I H1 H1 H 0 1 N N N N N N -11.007 0.687 -7.915 -3.162 0.808 -2.729 H1 X3I 30 X3I H2 H2 H 0 1 N N N N N N -10.638 1.203 -9.596 -4.610 1.642 -2.116 H2 X3I 31 X3I H3 H3 H 0 1 N N N N N N -13.279 -0.015 -8.378 -3.198 3.598 -1.458 H3 X3I 32 X3I H4 H4 H 0 1 N N N N N N -14.350 0.991 -9.410 -1.791 3.362 -0.394 H4 X3I 33 X3I H5 H5 H 0 1 N N N N N N -12.864 0.258 -10.104 -1.751 2.760 -2.069 H5 X3I 34 X3I H6 H6 H 0 1 N N N N N N -12.638 1.368 -11.438 -1.589 -0.188 -2.328 H6 X3I 35 X3I H7 H7 H 0 1 N N N N N N -11.001 2.017 -11.082 -0.624 1.272 -2.024 H7 X3I 36 X3I H8 H8 H 0 1 N N N N N N -14.295 1.853 -12.362 2.091 1.526 -1.506 H8 X3I 37 X3I H9 H9 H 0 1 N N N N N N -15.530 2.964 -13.044 0.477 2.100 -1.024 H9 X3I 38 X3I H10 H10 H 0 1 N N N N N N -14.237 2.302 -14.101 1.829 2.175 0.130 H10 X3I 39 X3I H11 H11 H 0 1 N N N N N N -13.169 5.798 -13.781 2.190 -1.576 0.249 H11 X3I 40 X3I H12 H12 H 0 1 N N N N N N -14.609 3.616 -15.231 3.600 1.071 -0.358 H12 X3I 41 X3I H13 H13 H 0 1 N N N N N N -14.626 6.641 -15.409 4.834 -0.465 1.200 H13 X3I 42 X3I H14 H14 H 0 1 N N N N N N -15.788 5.451 -16.087 4.734 -1.743 -0.035 H14 X3I 43 X3I H15 H15 H 0 1 N N N N N N -13.511 5.302 -11.159 -0.268 -0.678 1.344 H15 X3I 44 X3I H16 H16 H 0 1 N N N N N N -14.745 2.632 -10.469 -0.561 2.214 0.416 H16 X3I 45 X3I H17 H17 H 0 1 N N N N N N -14.138 5.068 -8.763 -2.273 0.533 2.318 H17 X3I 46 X3I H18 H18 H 0 1 N N N N N N -15.753 4.389 -9.157 -1.276 1.931 2.788 H18 X3I 47 X3I H19 H19 H 0 1 N N N N N N -14.885 3.738 -6.803 -3.648 2.589 2.496 H19 X3I 48 X3I H20 H20 H 0 1 N N N N N N -15.289 2.331 -7.844 -2.612 3.387 1.289 H20 X3I 49 X3I H21 H21 H 0 1 N N N N N N -13.148 1.828 -6.740 -4.668 2.485 0.235 H21 X3I 50 X3I H22 H22 H 0 1 N N N N N N -12.168 4.538 -7.760 -3.607 -0.201 1.223 H22 X3I 51 X3I H23 H23 H 0 1 N N N N N N -12.618 4.135 -6.068 -5.055 0.632 1.837 H23 X3I 52 X3I H24 H24 H 0 1 N N N N N N -10.865 2.339 -6.067 -6.073 0.527 -0.424 H24 X3I 53 X3I H25 H25 H 0 1 N N N N N N -9.253 4.561 -4.520 -7.780 -0.970 -0.090 H25 X3I 54 X3I H26 H26 H 0 1 N N N N N N -9.741 2.868 -4.872 -6.920 -1.797 -1.412 H26 X3I 55 X3I H28 H28 H 0 1 N N N N N N -9.165 2.309 -7.910 -4.961 -0.812 -2.191 H28 X3I 56 X3I H29 H29 H 0 1 N N N N N N -10.167 3.487 -8.823 -3.553 -1.046 -1.128 H29 X3I 57 X3I H30 H30 H 0 1 N N N N N N -11.953 3.807 -9.773 -2.244 -0.296 0.013 H30 X3I 58 X3I H31 H31 H 0 1 N N N N N N -11.894 2.768 -13.479 -0.097 -1.501 -0.848 H31 X3I 59 X3I H32 H32 H 0 1 N N N N N N -11.490 4.166 -12.425 0.855 -0.697 -2.125 H32 X3I 60 X3I H33 H33 H 0 1 N N N N N N -12.066 3.456 -15.220 4.243 -0.054 -2.472 H33 X3I 61 X3I H34 H34 H 0 1 N N N N N N -12.677 3.957 -16.833 3.287 -1.481 -2.003 H34 X3I 62 X3I H35 H35 H 0 1 N N N N N N -11.962 5.177 -15.725 2.474 0.069 -2.326 H35 X3I 63 X3I H36 H36 H 0 1 N N N N N N -14.207 5.049 -17.984 5.954 -0.293 -1.634 H36 X3I 64 X3I H37 H37 H 0 1 N N N N N N -13.139 6.334 -17.325 6.054 0.985 -0.398 H37 X3I 65 X3I H38 H38 H 0 1 N N N N N N -16.171 7.060 -19.899 8.667 -0.553 -1.585 H38 X3I 66 X3I H39 H39 H 0 1 N N N N N N -16.072 5.455 -19.099 8.767 0.725 -0.350 H39 X3I 67 X3I H40 H40 H 0 1 N N N N N N -15.404 6.742 -13.424 2.425 -0.968 2.457 H40 X3I 68 X3I H41 H41 H 0 1 N N N N N N -16.239 5.241 -13.950 3.307 0.511 1.980 H41 X3I 69 X3I H42 H42 H 0 1 N N N N N N -15.750 6.087 -11.191 1.339 1.828 2.037 H42 X3I 70 X3I H43 H43 H 0 1 N N N N N N -16.424 4.508 -11.722 0.779 0.546 3.161 H43 X3I 71 X3I C1 C27 C 0 1 N N N N N N ? ? ? -7.500 -3.037 0.186 C1 X3I 72 X3I C2 C28 C 0 1 N N N N N N ? ? ? -7.865 -4.074 0.598 C2 X3I 73 X3I H27 H27 H 0 1 N N N N N N ? ? ? -8.191 -5.001 0.966 H27 X3I 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X3I C27 C26 SING N N 1 X3I C26 O28 DOUB N N 2 X3I C26 C25 SING N N 3 X3I C25 C24 SING N N 4 X3I C24 C22 SING N N 5 X3I C23 C22 SING N N 6 X3I C22 C21 SING N N 7 X3I C21 C29 SING N N 8 X3I C21 C19 SING N N 9 X3I C29 C30 SING N N 10 X3I C20 C19 SING N N 11 X3I C19 C18 SING N N 12 X3I C19 C01 SING N N 13 X3I C18 C17 SING N N 14 X3I C30 C01 SING N N 15 X3I C01 C02 SING N N 16 X3I C17 C16 SING N N 17 X3I C02 C16 SING N N 18 X3I C02 C03 SING N N 19 X3I C16 C14 SING N N 20 X3I C15 C14 SING N N 21 X3I C03 C04 SING N N 22 X3I C14 C13 SING N N 23 X3I C14 C05 SING N N 24 X3I C13 C12 SING N N 25 X3I C12 C07 SING N N 26 X3I C04 C05 SING N N 27 X3I C05 C06 SING N N 28 X3I C06 C07 SING N N 29 X3I C07 O08 SING N N 30 X3I O08 C09 SING N N 31 X3I C27 F1 SING N N 32 X3I C13 H1 SING N N 33 X3I C13 H2 SING N N 34 X3I C15 H3 SING N N 35 X3I C15 H4 SING N N 36 X3I C15 H5 SING N N 37 X3I C17 H6 SING N N 38 X3I C17 H7 SING N N 39 X3I C20 H8 SING N N 40 X3I C20 H9 SING N N 41 X3I C20 H10 SING N N 42 X3I C21 H11 SING N N 43 X3I C22 H12 SING N N 44 X3I C24 H13 SING N N 45 X3I C24 H14 SING N N 46 X3I C01 H15 SING N N 47 X3I C02 H16 SING N N 48 X3I C03 H17 SING N N 49 X3I C03 H18 SING N N 50 X3I C04 H19 SING N N 51 X3I C04 H20 SING N N 52 X3I C05 H21 SING N N 53 X3I C06 H22 SING N N 54 X3I C06 H23 SING N N 55 X3I C07 H24 SING N N 56 X3I C09 H25 SING N N 57 X3I C09 H26 SING N N 58 X3I C12 H28 SING N N 59 X3I C12 H29 SING N N 60 X3I C16 H30 SING N N 61 X3I C18 H31 SING N N 62 X3I C18 H32 SING N N 63 X3I C23 H33 SING N N 64 X3I C23 H34 SING N N 65 X3I C23 H35 SING N N 66 X3I C25 H36 SING N N 67 X3I C25 H37 SING N N 68 X3I C27 H38 SING N N 69 X3I C27 H39 SING N N 70 X3I C29 H40 SING N N 71 X3I C29 H41 SING N N 72 X3I C30 H42 SING N N 73 X3I C30 H43 SING N N 74 X3I C09 C1 SING N N 75 X3I C1 C2 TRIP N N 76 X3I C2 H27 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X3I SMILES ACDLabs 12.01 "FCC(=O)CCC(C)C1CCC2C3CCC4CC(CCC4(C)C3CCC12C)OCC#C" X3I InChI InChI 1.06 "InChI=1S/C28H43FO2/c1-5-16-31-22-12-14-27(3)20(17-22)7-9-23-25-11-10-24(19(2)6-8-21(30)18-29)28(25,4)15-13-26(23)27/h1,19-20,22-26H,6-18H2,2-4H3/t19-,20-,22-,23+,24-,25+,26+,27+,28-/m1/s1" X3I InChIKey InChI 1.06 JOTTVZAFRMDQGM-BTQQYVALSA-N X3I SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCC(=O)CF)[C@H]1CC[C@H]2[C@@H]3CC[C@@H]4C[C@@H](CC[C@]4(C)[C@H]3CC[C@]12C)OCC#C" X3I SMILES CACTVS 3.385 "C[CH](CCC(=O)CF)[CH]1CC[CH]2[CH]3CC[CH]4C[CH](CC[C]4(C)[CH]3CC[C]12C)OCC#C" X3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC(=O)CF)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC[C@H]4[C@@]3(CC[C@H](C4)OCC#C)C)C" X3I SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCC(=O)CF)C1CCC2C1(CCC3C2CCC4C3(CCC(C4)OCC#C)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X3I "SYSTEMATIC NAME" ACDLabs 12.01 "(5R)-5-{(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-9a,11a-dimethyl-7-[(prop-2-yn-1-yl)oxy]hexadecahydro-1H-cyclopenta[a]phenanthren-1-yl}-1-fluorohexan-2-one (non-preferred name)" X3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{R})-5-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-prop-2-ynoxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]-1-fluoranyl-hexan-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X3I "Create component" 2022-10-26 RCSB X3I "Initial release" 2023-11-15 RCSB X3I "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X3I _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #