data_X3J
#
_chem_comp.id X3J
_chem_comp.name "(2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACID"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H14 N2 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-01-25
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 234.207
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X3J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2X3J
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X3J "C'" "C'" C 0 1 N N N -7.206 -14.289 -28.252 -3.591 -0.476 0.006 "C'" X3J 1
X3J "O1'" "O1'" O 0 1 N N N -8.013 -14.826 -29.055 -4.789 -0.970 -0.343 "O1'" X3J 2
X3J "O2'" "O2'" O 0 1 N N N -7.376 -14.143 -27.019 -3.523 0.516 0.693 "O2'" X3J 3
X3J C1 C1 C 0 1 N N N -5.881 -13.730 -28.792 -2.330 -1.162 -0.454 C1 X3J 4
X3J C3 C3 C 0 1 N N N -7.971 -15.187 -35.257 5.047 -0.543 -0.395 C3 X3J 5
X3J N3 N3 N 0 1 N N N -8.984 -14.751 -36.237 6.215 0.187 0.115 N3 X3J 6
X3J O3 O3 O 0 1 N N N -5.757 -15.372 -30.614 -1.088 -0.481 1.504 O3 X3J 7
X3J CM3 CM3 C 0 1 N N N -4.067 -13.589 -30.470 -1.199 1.042 -0.344 CM3 X3J 8
X3J "O3'" "O3'" O 0 1 N N N -3.263 -14.470 -30.844 -1.236 1.360 -1.647 "O3'" X3J 9
X3J C4 C4 C 0 1 N N N -7.133 -13.982 -34.862 3.770 0.079 0.173 C4 X3J 10
X3J N4 N4 N 0 1 N N N -7.248 -13.703 -33.411 2.604 -0.649 -0.336 N4 X3J 11
X3J "C4'" "C4'" C 0 1 N N N -6.176 -13.384 -32.690 1.363 -0.275 0.033 "C4'" X3J 12
X3J CAP CAP C 0 1 N N S -5.551 -13.986 -30.281 -1.113 -0.402 0.078 CAP X3J 13
X3J O4 O4 O 0 1 N N N -5.033 -13.312 -33.158 1.210 0.663 0.786 O4 X3J 14
X3J CM4 CM4 C 0 1 N N N -6.448 -13.115 -31.190 0.164 -1.024 -0.490 CM4 X3J 15
X3J OAF OAF O 0 1 N N N -3.759 -12.406 -30.229 -1.236 1.914 0.492 OAF X3J 16
X3J "H1'" "H1'" H 0 1 N N N -8.787 -15.111 -28.584 -5.569 -0.498 -0.021 "H1'" X3J 17
X3J H11C H11C H 0 0 N N N -5.916 -12.639 -28.656 -2.314 -2.184 -0.075 H11C X3J 18
X3J H12C H12C H 0 0 N N N -5.098 -14.262 -28.231 -2.302 -1.178 -1.543 H12C X3J 19
X3J H31C H31C H 0 0 N N N -8.467 -15.603 -34.368 5.028 -0.482 -1.483 H31C X3J 20
X3J H32C H32C H 0 0 N N N -7.329 -15.964 -35.699 5.109 -1.587 -0.090 H32C X3J 21
X3J H31N H31N H 0 0 N N N -9.869 -14.652 -35.781 6.221 0.200 1.124 H31N X3J 22
X3J H32N H32N H 0 0 N N N -8.712 -13.872 -36.629 7.072 -0.205 -0.246 H32N X3J 23
X3J H41C H41C H 0 0 N N N -6.079 -14.186 -35.103 3.789 0.019 1.261 H41C X3J 24
X3J H42C H42C H 0 0 N N N -7.498 -13.105 -35.417 3.707 1.124 -0.132 H42C X3J 25
X3J H3 H3 H 0 1 N N N -5.802 -15.468 -31.558 -1.033 -1.384 1.847 H3 X3J 26
X3J "H3'" "H3'" H 0 1 N N N -2.392 -14.096 -30.913 -1.292 2.299 -1.869 "H3'" X3J 27
X3J H4 H4 H 0 1 N N N -8.143 -13.755 -32.968 2.726 -1.399 -0.938 H4 X3J 28
X3J HM41 HM41 H 0 0 N N N -6.242 -12.055 -30.978 0.145 -0.964 -1.578 HM41 X3J 29
X3J HM42 HM42 H 0 0 N N N -7.498 -13.367 -30.980 0.227 -2.069 -0.185 HM42 X3J 30
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X3J "C'" "O1'" SING N N 1
X3J "C'" "O2'" DOUB N N 2
X3J "C'" C1 SING N N 3
X3J C1 CAP SING N N 4
X3J C3 N3 SING N N 5
X3J C3 C4 SING N N 6
X3J O3 CAP SING N N 7
X3J CM3 "O3'" SING N N 8
X3J CM3 CAP SING N N 9
X3J CM3 OAF DOUB N N 10
X3J C4 N4 SING N N 11
X3J N4 "C4'" SING N N 12
X3J "C4'" O4 DOUB N N 13
X3J "C4'" CM4 SING N N 14
X3J CM4 CAP SING N N 15
X3J "O1'" "H1'" SING N N 16
X3J C1 H11C SING N N 17
X3J C1 H12C SING N N 18
X3J C3 H31C SING N N 19
X3J C3 H32C SING N N 20
X3J N3 H31N SING N N 21
X3J N3 H32N SING N N 22
X3J C4 H41C SING N N 23
X3J C4 H42C SING N N 24
X3J O3 H3 SING N N 25
X3J "O3'" "H3'" SING N N 26
X3J N4 H4 SING N N 27
X3J CM4 HM41 SING N N 28
X3J CM4 HM42 SING N N 29
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X3J SMILES ACDLabs 10.04 "O=C(O)CC(O)(C(=O)O)CC(=O)NCCN"
X3J SMILES_CANONICAL CACTVS 3.352 "NCCNC(=O)C[C@](O)(CC(O)=O)C(O)=O"
X3J SMILES CACTVS 3.352 "NCCNC(=O)C[C](O)(CC(O)=O)C(O)=O"
X3J SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C(CNC(=O)C[C@](CC(=O)O)(C(=O)O)O)N"
X3J SMILES "OpenEye OEToolkits" 1.6.1 "C(CNC(=O)CC(CC(=O)O)(C(=O)O)O)N"
X3J InChI InChI 1.03 "InChI=1S/C8H14N2O6/c9-1-2-10-5(11)3-8(16,7(14)15)4-6(12)13/h16H,1-4,9H2,(H,10,11)(H,12,13)(H,14,15)/t8-/m0/s1"
X3J InChIKey InChI 1.03 KQWWDTIPDRWKGZ-QMMMGPOBSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X3J "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-{2-[(2-aminoethyl)amino]-2-oxoethyl}-2-hydroxybutanedioic acid"
X3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-[2-(2-aminoethylamino)-2-oxo-ethyl]-2-hydroxy-butanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X3J "Create component" 2010-01-25 EBI
X3J "Modify descriptor" 2011-06-04 RCSB
X3J "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id X3J
_pdbx_chem_comp_synonyms.name "5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##