data_X3O # _chem_comp.id X3O _chem_comp.name "2-{bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl}-2-methyl-N-(2-{[2-(trifluoromethyl)phenyl]sulfanyl}ethyl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H21 F9 N3 O2 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-31 _chem_comp.pdbx_modified_date 2024-09-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 629.478 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SZN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X3O C11 C1 C 0 1 Y N N N N N -85.380 -64.965 110.449 5.770 1.764 0.554 C11 X3O 1 X3O C13 C2 C 0 1 N N N N N N -88.157 -66.631 106.947 1.601 1.246 1.936 C13 X3O 2 X3O C14 C3 C 0 1 N N N N N N -86.845 -67.250 107.420 0.147 1.002 2.246 C14 X3O 3 X3O C16 C4 C 0 1 N N N N N N -85.538 -68.726 108.919 -2.195 0.911 1.580 C16 X3O 4 X3O C17 C5 C 0 1 N N N N N N -85.748 -70.107 109.525 -3.031 1.144 0.320 C17 X3O 5 X3O C19 C6 C 0 1 Y N N N N N -86.427 -72.777 108.793 -5.573 1.162 -0.851 C19 X3O 6 X3O C20 C7 C 0 1 Y N N N N N -85.949 -74.070 108.718 -6.953 1.042 -0.963 C20 X3O 7 X3O C21 C8 C 0 1 N N N N N N -84.486 -74.305 108.314 -7.775 0.638 0.234 C21 X3O 8 X3O C25 C9 C 0 1 Y N N N N N -86.794 -75.113 109.082 -7.570 1.293 -2.172 C25 X3O 9 X3O C26 C10 C 0 1 Y N N N N N -88.089 -74.845 109.512 -6.817 1.663 -3.271 C26 X3O 10 X3O C27 C11 C 0 1 Y N N N N N -88.561 -73.542 109.571 -5.443 1.784 -3.164 C27 X3O 11 X3O C28 C12 C 0 1 Y N N N N N -87.722 -72.502 109.209 -4.819 1.535 -1.957 C28 X3O 12 X3O C03 C13 C 0 1 Y N N N N N -87.253 -64.806 109.151 3.710 0.999 -0.140 C03 X3O 13 X3O C04 C14 C 0 1 Y N N N N N -87.001 -63.464 108.892 4.210 0.664 -1.384 C04 X3O 14 X3O C05 C15 C 0 1 Y N N N N N -85.879 -62.858 109.451 5.551 0.888 -1.656 C05 X3O 15 X3O C06 C16 C 0 1 Y N N N N N -85.043 -63.640 110.242 6.341 1.449 -0.665 C06 X3O 16 X3O C07 C17 C 0 1 N N N N N N -83.786 -63.070 110.912 7.804 1.712 -0.913 C07 X3O 17 X3O C30 C18 C 0 1 N N N N N N -87.799 -65.685 105.806 1.908 2.739 2.072 C30 X3O 18 X3O C31 C19 C 0 1 N N N N N N -89.169 -67.699 106.530 2.471 0.456 2.916 C31 X3O 19 X3O C32 C20 C 0 1 Y N N N N N -90.057 -64.443 108.020 1.596 -1.065 0.071 C32 X3O 20 X3O C34 C21 C 0 1 Y N N N N N -92.135 -63.650 108.593 0.868 -3.022 1.043 C34 X3O 21 X3O C35 C22 C 0 1 Y N N N N N -92.072 -62.744 107.560 1.042 -3.719 -0.138 C35 X3O 22 X3O C36 C23 C 0 1 N N N N N N -93.247 -61.815 107.366 0.721 -5.190 -0.210 C36 X3O 23 X3O C40 C24 C 0 1 Y N N N N N -90.967 -62.676 106.726 1.520 -3.049 -1.254 C40 X3O 24 X3O C41 C25 C 0 1 Y N N N N N -89.925 -63.548 106.968 1.800 -1.696 -1.141 C41 X3O 25 X3O F08 F1 F 0 1 N N N N N N -84.081 -61.808 111.354 7.964 2.999 -1.438 F08 X3O 26 X3O F09 F2 F 0 1 N N N N N N -82.729 -63.037 110.036 8.507 1.610 0.292 F09 X3O 27 X3O F10 F3 F 0 1 N N N N N N -83.442 -63.860 111.982 8.299 0.772 -1.823 F10 X3O 28 X3O F22 F4 F 0 1 N N N N N N -83.694 -73.536 109.125 -7.600 1.576 1.258 F22 X3O 29 X3O F23 F5 F 0 1 N N N N N N -84.155 -75.614 108.516 -9.126 0.586 -0.124 F23 X3O 30 X3O F24 F6 F 0 1 N N N N N N -84.198 -73.930 107.041 -7.361 -0.621 0.680 F24 X3O 31 X3O F37 F7 F 0 1 N N N N N N -93.617 -61.889 106.052 1.873 -5.901 -0.563 F37 X3O 32 X3O F38 F8 F 0 1 N N N N N N -92.859 -60.560 107.734 0.265 -5.630 1.037 F38 X3O 33 X3O F39 F9 F 0 1 N N N N N N -94.263 -62.208 108.190 -0.272 -5.404 -1.171 F39 X3O 34 X3O N12 N1 N 0 1 Y N N N N N -86.444 -65.514 109.912 4.492 1.532 0.780 N12 X3O 35 X3O N15 N2 N 0 1 N N N N N N -86.831 -68.203 108.511 -0.781 1.148 1.279 N15 X3O 36 X3O N33 N3 N 0 1 Y N N N N N -91.131 -64.461 108.785 1.146 -1.735 1.114 N33 X3O 37 X3O O01 O1 O 0 1 N N N N N N -89.217 -66.624 109.428 1.118 1.470 -0.715 O01 X3O 38 X3O O29 O2 O 0 1 N N N N N N -85.828 -66.904 106.924 -0.188 0.673 3.364 O29 X3O 39 X3O P02 P1 P 0 1 N N R N N N -88.732 -65.673 108.433 1.960 0.705 0.233 P02 X3O 40 X3O S18 S1 S 0 1 N N N N N N -85.337 -71.406 108.331 -4.782 0.850 0.692 S18 X3O 41 X3O H1 H1 H 0 1 N N N N N N -84.743 -65.571 111.076 6.379 2.202 1.331 H1 X3O 42 X3O H2 H2 H 0 1 N N N N N N -84.875 -68.801 108.045 -2.520 1.595 2.364 H2 X3O 43 X3O H3 H3 H 0 1 N N N N N N -85.086 -68.057 109.666 -2.327 -0.117 1.918 H3 X3O 44 X3O H4 H4 H 0 1 N N N N N N -86.801 -70.213 109.824 -2.899 2.172 -0.018 H4 X3O 45 X3O H5 H5 H 0 1 N N N N N N -85.103 -70.214 110.410 -2.706 0.460 -0.463 H5 X3O 46 X3O H6 H6 H 0 1 N N N N N N -86.444 -76.133 109.031 -8.643 1.200 -2.260 H6 X3O 47 X3O H7 H7 H 0 1 N N N N N N -88.734 -75.660 109.803 -7.302 1.858 -4.216 H7 X3O 48 X3O H8 H8 H 0 1 N N N N N N -89.571 -73.341 109.896 -4.858 2.074 -4.024 H8 X3O 49 X3O H9 H9 H 0 1 N N N N N N -88.074 -71.482 109.250 -3.747 1.630 -1.874 H9 X3O 50 X3O H10 H10 H 0 1 N N N N N N -87.670 -62.896 108.262 3.565 0.228 -2.132 H10 X3O 51 X3O H11 H11 H 0 1 N N N N N N -85.664 -61.814 109.276 5.969 0.635 -2.619 H11 X3O 52 X3O H12 H12 H 0 1 N N N N N N -87.071 -64.941 106.161 1.694 3.063 3.091 H12 X3O 53 X3O H13 H13 H 0 1 N N N N N N -87.361 -66.260 104.977 2.960 2.916 1.849 H13 X3O 54 X3O H14 H14 H 0 1 N N N N N N -88.707 -65.172 105.457 1.288 3.302 1.374 H14 X3O 55 X3O H15 H15 H 0 1 N N N N N N -89.390 -68.351 107.388 2.253 -0.608 2.819 H15 X3O 56 X3O H16 H16 H 0 1 N N N N N N -90.096 -67.213 106.191 3.523 0.633 2.692 H16 X3O 57 X3O H17 H17 H 0 1 N N N N N N -88.750 -68.301 105.711 2.257 0.779 3.934 H17 X3O 58 X3O H18 H18 H 0 1 N N N N N N -93.002 -63.690 109.235 0.501 -3.538 1.918 H18 X3O 59 X3O H19 H19 H 0 1 N N N N N N -90.923 -61.965 105.914 1.670 -3.569 -2.188 H19 X3O 60 X3O H20 H20 H 0 1 N N N N N N -89.034 -63.534 106.357 2.174 -1.143 -1.990 H20 X3O 61 X3O H21 H21 H 0 1 N N N N N N -87.675 -68.489 108.964 -0.513 1.411 0.385 H21 X3O 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X3O C30 C13 SING N N 1 X3O F37 C36 SING N N 2 X3O C31 C13 SING N N 3 X3O C40 C41 DOUB Y N 4 X3O C40 C35 SING Y N 5 X3O O29 C14 DOUB N N 6 X3O C13 C14 SING N N 7 X3O C13 P02 SING N N 8 X3O C41 C32 SING Y N 9 X3O F24 C21 SING N N 10 X3O C36 C35 SING N N 11 X3O C36 F38 SING N N 12 X3O C36 F39 SING N N 13 X3O C14 N15 SING N N 14 X3O C35 C34 DOUB Y N 15 X3O C32 P02 SING N N 16 X3O C32 N33 DOUB Y N 17 X3O C21 F23 SING N N 18 X3O C21 C20 SING N N 19 X3O C21 F22 SING N N 20 X3O S18 C19 SING N N 21 X3O S18 C17 SING N N 22 X3O P02 C03 SING N N 23 X3O P02 O01 DOUB N N 24 X3O N15 C16 SING N N 25 X3O C34 N33 SING Y N 26 X3O C20 C19 DOUB Y N 27 X3O C20 C25 SING Y N 28 X3O C19 C28 SING Y N 29 X3O C04 C03 DOUB Y N 30 X3O C04 C05 SING Y N 31 X3O C16 C17 SING N N 32 X3O C25 C26 DOUB Y N 33 X3O C03 N12 SING Y N 34 X3O C28 C27 DOUB Y N 35 X3O C05 C06 DOUB Y N 36 X3O C26 C27 SING Y N 37 X3O N12 C11 DOUB Y N 38 X3O F09 C07 SING N N 39 X3O C06 C11 SING Y N 40 X3O C06 C07 SING N N 41 X3O C07 F08 SING N N 42 X3O C07 F10 SING N N 43 X3O C11 H1 SING N N 44 X3O C16 H2 SING N N 45 X3O C16 H3 SING N N 46 X3O C17 H4 SING N N 47 X3O C17 H5 SING N N 48 X3O C25 H6 SING N N 49 X3O C26 H7 SING N N 50 X3O C27 H8 SING N N 51 X3O C28 H9 SING N N 52 X3O C04 H10 SING N N 53 X3O C05 H11 SING N N 54 X3O C30 H12 SING N N 55 X3O C30 H13 SING N N 56 X3O C30 H14 SING N N 57 X3O C31 H15 SING N N 58 X3O C31 H16 SING N N 59 X3O C31 H17 SING N N 60 X3O C34 H18 SING N N 61 X3O C40 H19 SING N N 62 X3O C41 H20 SING N N 63 X3O N15 H21 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X3O SMILES ACDLabs 12.01 "O=P(c1ccc(cn1)C(F)(F)F)(c1ccc(cn1)C(F)(F)F)C(C)(C)C(=O)NCCSc1ccccc1C(F)(F)F" X3O InChI InChI 1.06 "InChI=1S/C25H21F9N3O2PS/c1-22(2,21(38)35-11-12-41-18-6-4-3-5-17(18)25(32,33)34)40(39,19-9-7-15(13-36-19)23(26,27)28)20-10-8-16(14-37-20)24(29,30)31/h3-10,13-14H,11-12H2,1-2H3,(H,35,38)" X3O InChIKey InChI 1.06 YZQNSGLJZOYKHY-UHFFFAOYSA-N X3O SMILES_CANONICAL CACTVS 3.385 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)[P@@](=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F" X3O SMILES CACTVS 3.385 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)[P](=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F" X3O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)P(=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F" X3O SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)P(=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X3O "SYSTEMATIC NAME" ACDLabs 12.01 "2-{bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl}-2-methyl-N-(2-{[2-(trifluoromethyl)phenyl]sulfanyl}ethyl)propanamide" X3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl-2-methyl-~{N}-[2-[2-(trifluoromethyl)phenyl]sulfanylethyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X3O "Create component" 2023-05-31 RCSB X3O "Initial release" 2024-09-18 RCSB #