data_X3P # _chem_comp.id X3P _chem_comp.name "[(2~{R})-1-octanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] nonanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H51 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-24 _chem_comp.pdbx_modified_date 2020-11-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 524.648 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X3P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7KRA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X3P N N1 N 0 1 N N N 223.689 210.169 206.114 ? ? ? N X3P 1 X3P P P1 P 0 1 N N N 226.342 207.122 207.577 ? ? ? P X3P 2 X3P C1 C1 C 0 1 N N N 224.641 205.737 209.053 ? ? ? C1 X3P 3 X3P C2 C2 C 0 1 N N R 223.222 206.284 209.105 ? ? ? C2 X3P 4 X3P C3 C3 C 0 1 N N N 222.235 205.123 209.324 ? ? ? C3 X3P 5 X3P C11 C4 C 0 1 N N N 225.415 208.371 205.395 ? ? ? C11 X3P 6 X3P O11 O1 O 0 1 N N N 225.571 206.815 209.028 ? ? ? O11 X3P 7 X3P C12 C5 C 0 1 N N N 225.124 209.831 205.906 ? ? ? C12 X3P 8 X3P O12 O2 O 0 1 N N N 225.180 207.394 206.411 ? ? ? O12 X3P 9 X3P C13 C6 C 0 1 N N N 222.953 210.167 204.853 ? ? ? C13 X3P 10 X3P O13 O3 O 0 1 N N N 227.177 205.918 207.188 ? ? ? O13 X3P 11 X3P C14 C7 C 0 1 N N N 223.052 209.249 207.071 ? ? ? C14 X3P 12 X3P O14 O4 O 0 1 N N N 227.234 208.334 207.718 ? ? ? O14 X3P 13 X3P C15 C8 C 0 1 N N N 223.638 211.497 206.676 ? ? ? C15 X3P 14 X3P C21 C9 C 0 1 N N N 221.843 207.843 210.290 ? ? ? C21 X3P 15 X3P O21 O5 O 0 1 N N N 223.121 207.203 210.166 ? ? ? O21 X3P 16 X3P C22 C10 C 0 1 N N N 221.234 208.111 211.703 ? ? ? C22 X3P 17 X3P O22 O6 O 0 1 N N N 221.251 208.174 209.319 ? ? ? O22 X3P 18 X3P C23 C11 C 0 1 N N N 219.802 207.511 211.770 ? ? ? C23 X3P 19 X3P C24 C12 C 0 1 N N N 219.892 206.025 212.180 ? ? ? C24 X3P 20 X3P C25 C13 C 0 1 N N N 218.467 205.411 212.253 ? ? ? C25 X3P 21 X3P C26 C14 C 0 1 N N N 217.945 205.473 213.717 ? ? ? C26 X3P 22 X3P C27 C15 C 0 1 N N N 216.399 205.527 213.711 ? ? ? C27 X3P 23 X3P C28 C16 C 0 1 N N N 215.867 205.149 215.123 ? ? ? C28 X3P 24 X3P C29 C17 C 0 1 N N N 215.503 203.647 215.149 ? ? ? C29 X3P 25 X3P C31 C18 C 0 1 N N N 222.101 202.783 209.004 ? ? ? C31 X3P 26 X3P O31 O7 O 0 1 N N N 222.602 204.022 208.499 ? ? ? O31 X3P 27 X3P C32 C19 C 0 1 N N N 223.014 201.918 209.916 ? ? ? C32 X3P 28 X3P O32 O8 O 0 1 N N N 221.007 202.423 208.732 ? ? ? O32 X3P 29 X3P C33 C20 C 0 1 N N N 222.554 202.087 211.382 ? ? ? C33 X3P 30 X3P C34 C21 C 0 1 N N N 223.761 202.525 212.249 ? ? ? C34 X3P 31 X3P C35 C22 C 0 1 N N N 223.339 202.620 213.730 ? ? ? C35 X3P 32 X3P C36 C23 C 0 1 N N N 223.268 201.197 214.352 ? ? ? C36 X3P 33 X3P C37 C24 C 0 1 N N N 223.047 201.307 215.898 ? ? ? C37 X3P 34 X3P C38 C25 C 0 1 N N N 223.429 199.955 216.581 ? ? ? C38 X3P 35 X3P H1 H1 H 0 1 N N N 224.764 205.127 208.146 ? ? ? H1 X3P 36 X3P H2 H2 H 0 1 N N N 224.826 205.115 209.941 ? ? ? H2 X3P 37 X3P H3 H3 H 0 1 N N N 222.990 206.771 208.146 ? ? ? H3 X3P 38 X3P H4 H4 H 0 1 N N N 221.218 205.453 209.064 ? ? ? H4 X3P 39 X3P H5 H5 H 0 1 N N N 222.261 204.814 210.379 ? ? ? H5 X3P 40 X3P H6 H6 H 0 1 N N N 224.760 208.157 204.538 ? ? ? H6 X3P 41 X3P H7 H7 H 0 1 N N N 226.466 208.308 205.078 ? ? ? H7 X3P 42 X3P H8 H8 H 0 1 N N N 225.645 209.963 206.866 ? ? ? H8 X3P 43 X3P H9 H9 H 0 1 N N N 225.533 210.535 205.167 ? ? ? H9 X3P 44 X3P H10 H10 H 0 1 N N N 221.899 210.420 205.042 ? ? ? H10 X3P 45 X3P H11 H11 H 0 1 N N N 223.392 210.911 204.171 ? ? ? H11 X3P 46 X3P H12 H12 H 0 1 N N N 223.014 209.169 204.395 ? ? ? H12 X3P 47 X3P H13 H13 H 0 1 N N N 223.613 209.257 208.017 ? ? ? H13 X3P 48 X3P H14 H14 H 0 1 N N N 222.017 209.571 207.256 ? ? ? H14 X3P 49 X3P H15 H15 H 0 1 N N N 223.050 208.231 206.655 ? ? ? H15 X3P 50 X3P H16 H16 H 0 1 N N N 228.133 208.089 207.533 ? ? ? H16 X3P 51 X3P H17 H17 H 0 1 N N N 224.189 211.514 207.628 ? ? ? H17 X3P 52 X3P H18 H18 H 0 1 N N N 224.096 212.210 205.974 ? ? ? H18 X3P 53 X3P H19 H19 H 0 1 N N N 222.590 211.780 206.854 ? ? ? H19 X3P 54 X3P H20 H20 H 0 1 N N N 221.866 207.640 212.470 ? ? ? H20 X3P 55 X3P H21 H21 H 0 1 N N N 221.186 209.195 211.883 ? ? ? H21 X3P 56 X3P H22 H22 H 0 1 N N N 219.207 208.062 212.513 ? ? ? H22 X3P 57 X3P H23 H23 H 0 1 N N N 219.323 207.592 210.783 ? ? ? H23 X3P 58 X3P H24 H24 H 0 1 N N N 220.488 205.476 211.436 ? ? ? H24 X3P 59 X3P H25 H25 H 0 1 N N N 220.374 205.947 213.166 ? ? ? H25 X3P 60 X3P H26 H26 H 0 1 N N N 217.790 205.980 211.599 ? ? ? H26 X3P 61 X3P H27 H27 H 0 1 N N N 218.503 204.363 211.921 ? ? ? H27 X3P 62 X3P H28 H28 H 0 1 N N N 218.279 204.579 214.263 ? ? ? H28 X3P 63 X3P H29 H29 H 0 1 N N N 218.341 206.373 214.210 ? ? ? H29 X3P 64 X3P H30 H30 H 0 1 N N N 216.068 206.544 213.453 ? ? ? H30 X3P 65 X3P H31 H31 H 0 1 N N N 216.009 204.815 212.969 ? ? ? H31 X3P 66 X3P H32 H32 H 0 1 N N N 216.644 205.351 215.874 ? ? ? H32 X3P 67 X3P H33 H33 H 0 1 N N N 214.973 205.747 215.351 ? ? ? H33 X3P 68 X3P H34 H34 H 0 1 N N N 215.127 203.378 216.147 ? ? ? H34 X3P 69 X3P H35 H35 H 0 1 N N N 214.726 203.445 214.397 ? ? ? H35 X3P 70 X3P H36 H36 H 0 1 N N N 216.398 203.049 214.921 ? ? ? H36 X3P 71 X3P H37 H37 H 0 1 N N N 222.935 200.861 209.623 ? ? ? H37 X3P 72 X3P H38 H38 H 0 1 N N N 224.058 202.249 209.815 ? ? ? H38 X3P 73 X3P H39 H39 H 0 1 N N N 221.767 202.853 211.434 ? ? ? H39 X3P 74 X3P H40 H40 H 0 1 N N N 222.160 201.131 211.756 ? ? ? H40 X3P 75 X3P H41 H41 H 0 1 N N N 224.570 201.786 212.147 ? ? ? H41 X3P 76 X3P H42 H42 H 0 1 N N N 224.117 203.508 211.908 ? ? ? H42 X3P 77 X3P H43 H43 H 0 1 N N N 224.076 203.223 214.281 ? ? ? H43 X3P 78 X3P H44 H44 H 0 1 N N N 222.350 203.097 213.798 ? ? ? H44 X3P 79 X3P H45 H45 H 0 1 N N N 222.432 200.642 213.902 ? ? ? H45 X3P 80 X3P H46 H46 H 0 1 N N N 224.210 200.664 214.154 ? ? ? H46 X3P 81 X3P H47 H47 H 0 1 N N N 223.679 202.112 216.301 ? ? ? H47 X3P 82 X3P H48 H48 H 0 1 N N N 221.990 201.534 216.101 ? ? ? H48 X3P 83 X3P H49 H49 H 0 1 N N N 223.273 200.035 217.667 ? ? ? H49 X3P 84 X3P H50 H50 H 0 1 N N N 222.797 199.150 216.178 ? ? ? H50 X3P 85 X3P H51 H51 H 0 1 N N N 224.486 199.728 216.379 ? ? ? H51 X3P 86 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X3P C13 N SING N N 1 X3P C11 C12 SING N N 2 X3P C11 O12 SING N N 3 X3P C12 N SING N N 4 X3P N C15 SING N N 5 X3P N C14 SING N N 6 X3P O12 P SING N N 7 X3P O13 P DOUB N N 8 X3P P O14 SING N N 9 X3P P O11 SING N N 10 X3P O31 C31 SING N N 11 X3P O31 C3 SING N N 12 X3P O32 C31 DOUB N N 13 X3P C31 C32 SING N N 14 X3P O11 C1 SING N N 15 X3P C1 C2 SING N N 16 X3P C2 C3 SING N N 17 X3P C2 O21 SING N N 18 X3P O22 C21 DOUB N N 19 X3P C32 C33 SING N N 20 X3P O21 C21 SING N N 21 X3P C21 C22 SING N N 22 X3P C33 C34 SING N N 23 X3P C22 C23 SING N N 24 X3P C23 C24 SING N N 25 X3P C24 C25 SING N N 26 X3P C34 C35 SING N N 27 X3P C25 C26 SING N N 28 X3P C27 C26 SING N N 29 X3P C27 C28 SING N N 30 X3P C35 C36 SING N N 31 X3P C36 C37 SING N N 32 X3P C28 C29 SING N N 33 X3P C37 C38 SING N N 34 X3P C1 H1 SING N N 35 X3P C1 H2 SING N N 36 X3P C2 H3 SING N N 37 X3P C3 H4 SING N N 38 X3P C3 H5 SING N N 39 X3P C11 H6 SING N N 40 X3P C11 H7 SING N N 41 X3P C12 H8 SING N N 42 X3P C12 H9 SING N N 43 X3P C13 H10 SING N N 44 X3P C13 H11 SING N N 45 X3P C13 H12 SING N N 46 X3P C14 H13 SING N N 47 X3P C14 H14 SING N N 48 X3P C14 H15 SING N N 49 X3P O14 H16 SING N N 50 X3P C15 H17 SING N N 51 X3P C15 H18 SING N N 52 X3P C15 H19 SING N N 53 X3P C22 H20 SING N N 54 X3P C22 H21 SING N N 55 X3P C23 H22 SING N N 56 X3P C23 H23 SING N N 57 X3P C24 H24 SING N N 58 X3P C24 H25 SING N N 59 X3P C25 H26 SING N N 60 X3P C25 H27 SING N N 61 X3P C26 H28 SING N N 62 X3P C26 H29 SING N N 63 X3P C27 H30 SING N N 64 X3P C27 H31 SING N N 65 X3P C28 H32 SING N N 66 X3P C28 H33 SING N N 67 X3P C29 H34 SING N N 68 X3P C29 H35 SING N N 69 X3P C29 H36 SING N N 70 X3P C32 H37 SING N N 71 X3P C32 H38 SING N N 72 X3P C33 H39 SING N N 73 X3P C33 H40 SING N N 74 X3P C34 H41 SING N N 75 X3P C34 H42 SING N N 76 X3P C35 H43 SING N N 77 X3P C35 H44 SING N N 78 X3P C36 H45 SING N N 79 X3P C36 H46 SING N N 80 X3P C37 H47 SING N N 81 X3P C37 H48 SING N N 82 X3P C38 H49 SING N N 83 X3P C38 H50 SING N N 84 X3P C38 H51 SING N N 85 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X3P InChI InChI 1.03 "InChI=1S/C25H51NO8P/c1-6-8-10-12-14-16-18-25(28)34-23(21-31-24(27)17-15-13-11-9-7-2)22-33-35(29,30)32-20-19-26(3,4)5/h23H,6-22H2,1-5H3,(H,29,30)/t23-/m1/s1" X3P InChIKey InChI 1.03 JUTWCUAFOQXGFE-HSZRJFAPSA-N X3P SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC)CO[P](O)(=O)OCC[N](C)(C)C" X3P SMILES CACTVS 3.385 "CCCCCCCCC(=O)O[CH](COC(=O)CCCCCCC)CO[P](O)(=O)OCC[N](C)(C)C" X3P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC)COP(=O)(O)OCC[N](C)(C)C" X3P SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC(=O)OC(COC(=O)CCCCCCC)COP(=O)(O)OCC[N](C)(C)C" # _pdbx_chem_comp_identifier.comp_id X3P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-1-octanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] nonanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X3P "Create component" 2020-11-24 RCSB X3P "Initial release" 2020-12-02 RCSB ##