data_X3Q # _chem_comp.id X3Q _chem_comp.name "(7M)-7-[(4S)-imidazo[1,2-b]pyridazin-3-yl]-1-[(1R)-1-phenylethyl]-3-(piperazin-1-yl)pyrido[3,4-b]pyrazin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-20 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.511 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X3Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UOI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X3Q C15 C1 C 0 1 Y N N N N N -34.143 -20.634 -5.812 -3.826 -3.054 0.503 C15 X3Q 1 X3Q C12 C2 C 0 1 Y N N N N N -35.527 -24.028 -6.747 -1.004 -0.633 -0.189 C12 X3Q 2 X3Q C11 C3 C 0 1 Y N N N N N -35.525 -22.712 -6.324 -1.611 -1.818 0.227 C11 X3Q 3 X3Q C13 C4 C 0 1 Y N N N N N -36.737 -24.730 -6.844 0.376 -0.523 -0.103 C13 X3Q 4 X3Q C14 C5 C 0 1 Y N N N N N -34.290 -21.927 -6.239 -3.076 -1.954 0.136 C14 X3Q 5 X3Q C01 C6 C 0 1 N N N N N N -34.720 -27.202 -6.416 1.235 2.816 -1.576 C01 X3Q 6 X3Q C02 C7 C 0 1 N N R N N N -35.666 -26.902 -7.589 0.266 1.766 -1.028 C02 X3Q 7 X3Q C04 C8 C 0 1 N N N N N N -38.079 -26.715 -7.254 2.371 0.689 -0.399 C04 X3Q 8 X3Q C06 C9 C 0 1 N N N N N N -39.302 -25.903 -6.952 3.103 -0.473 0.135 C06 X3Q 9 X3Q C08 C10 C 0 1 Y N N N N N -37.922 -24.063 -6.532 1.112 -1.615 0.403 C08 X3Q 10 X3Q C09 C11 C 0 1 Y N N N N N -37.824 -22.728 -6.159 0.423 -2.769 0.799 C09 X3Q 11 X3Q C17 C12 C 0 1 Y N N N N N -32.167 -21.211 -6.418 -5.213 -1.560 -0.239 C17 X3Q 12 X3Q C18 C13 C 0 1 Y N N N N N -30.794 -21.363 -6.769 -6.322 -0.801 -0.659 C18 X3Q 13 X3Q C19 C14 C 0 1 Y N N N N N -30.396 -22.538 -7.295 -6.121 0.457 -1.141 C19 X3Q 14 X3Q C20 C15 C 0 1 Y N N N N N -31.360 -23.588 -7.487 -4.827 0.984 -1.215 C20 X3Q 15 X3Q C24 C16 C 0 1 N N N N N N -41.683 -25.770 -6.505 5.249 0.698 -0.309 C24 X3Q 16 X3Q C25 C17 C 0 1 N N N N N N -42.796 -26.760 -6.121 6.374 0.137 -1.184 C25 X3Q 17 X3Q C27 C18 C 0 1 N N N N N N -42.060 -28.287 -7.884 6.348 -1.979 0.000 C27 X3Q 18 X3Q C28 C19 C 0 1 N N N N N N -40.958 -27.271 -8.239 5.221 -1.504 0.925 C28 X3Q 19 X3Q C29 C20 C 0 1 Y N N N N N -34.989 -26.315 -8.866 -0.560 2.373 0.077 C29 X3Q 20 X3Q C30 C21 C 0 1 Y N N N N N -35.791 -25.751 -9.879 -1.879 2.715 -0.154 C30 X3Q 21 X3Q C31 C22 C 0 1 Y N N N N N -35.228 -25.199 -11.031 -2.637 3.272 0.859 C31 X3Q 22 X3Q C32 C23 C 0 1 Y N N N N N -33.840 -25.209 -11.209 -2.075 3.487 2.104 C32 X3Q 23 X3Q C33 C24 C 0 1 Y N N N N N -33.045 -25.750 -10.212 -0.756 3.144 2.335 C33 X3Q 24 X3Q C34 C25 C 0 1 Y N N N N N -33.613 -26.293 -9.055 -0.000 2.582 1.323 C34 X3Q 25 X3Q N03 N1 N 0 1 N N N N N N -36.857 -26.065 -7.221 1.024 0.628 -0.502 N03 X3Q 26 X3Q N07 N2 N 0 1 N N N N N N -39.172 -24.664 -6.626 2.454 -1.549 0.504 N07 X3Q 27 X3Q N10 N3 N 0 1 Y N N N N N -36.682 -22.074 -6.051 -0.886 -2.829 0.705 N10 X3Q 28 X3Q N16 N4 N 0 1 Y N N N N N -32.831 -20.208 -5.891 -5.104 -2.785 0.262 N16 X3Q 29 X3Q N21 N5 N 0 1 Y N N N N N -32.619 -23.496 -7.184 -3.794 0.282 -0.830 N21 X3Q 30 X3Q N22 N6 N 0 1 Y N N N N N -33.012 -22.292 -6.648 -3.960 -1.013 -0.330 N22 X3Q 31 X3Q N23 N7 N 0 1 N N N N N N -40.523 -26.524 -7.028 4.483 -0.428 0.247 N23 X3Q 32 X3Q N26 N8 N 0 1 N N N N N N -43.208 -27.610 -7.263 7.163 -0.826 -0.405 N26 X3Q 33 X3Q O05 O1 O 0 1 N N N N N N -38.140 -27.890 -7.552 2.971 1.690 -0.743 O05 X3Q 34 X3Q H1 H1 H 0 1 N N N N N N -34.957 -20.020 -5.456 -3.440 -3.976 0.912 H1 X3Q 35 X3Q H2 H2 H 0 1 N N N N N N -34.598 -24.515 -7.003 -1.598 0.182 -0.576 H2 X3Q 36 X3Q H3 H3 H 0 1 N N N N N N -35.298 -27.609 -5.573 1.912 2.347 -2.289 H3 X3Q 37 X3Q H4 H4 H 0 1 N N N N N N -33.965 -27.937 -6.732 0.672 3.605 -2.074 H4 X3Q 38 X3Q H5 H5 H 0 1 N N N N N N -34.219 -26.274 -6.103 1.810 3.243 -0.755 H5 X3Q 39 X3Q H6 H6 H 0 1 N N N N N N -36.069 -27.878 -7.898 -0.392 1.425 -1.828 H6 X3Q 40 X3Q H7 H7 H 0 1 N N N N N N -38.737 -22.193 -5.944 0.971 -3.614 1.188 H7 X3Q 41 X3Q H8 H8 H 0 1 N N N N N N -30.091 -20.557 -6.617 -7.319 -1.212 -0.599 H8 X3Q 42 X3Q H9 H9 H 0 1 N N N N N N -29.363 -22.690 -7.570 -6.964 1.049 -1.467 H9 X3Q 43 X3Q H10 H10 H 0 1 N N N N N N -31.012 -24.518 -7.913 -4.679 1.983 -1.599 H10 X3Q 44 X3Q H11 H11 H 0 1 N N N N N N -41.379 -25.195 -5.618 5.675 1.287 0.503 H11 X3Q 45 X3Q H12 H12 H 0 1 N N N N N N -42.054 -25.081 -7.279 4.594 1.327 -0.912 H12 X3Q 46 X3Q H13 H13 H 0 1 N N N N N N -43.670 -26.192 -5.769 5.944 -0.363 -2.053 H13 X3Q 47 X3Q H14 H14 H 0 1 N N N N N N -42.430 -27.408 -5.311 7.018 0.952 -1.516 H14 X3Q 48 X3Q H15 H15 H 0 1 N N N N N N -42.393 -28.795 -8.801 6.973 -2.698 0.529 H15 X3Q 49 X3Q H16 H16 H 0 1 N N N N N N -41.654 -29.029 -7.181 5.919 -2.450 -0.884 H16 X3Q 50 X3Q H17 H17 H 0 1 N N N N N N -40.096 -27.807 -8.662 4.547 -2.334 1.136 H17 X3Q 51 X3Q H18 H18 H 0 1 N N N N N N -41.348 -26.559 -8.982 5.646 -1.127 1.855 H18 X3Q 52 X3Q H19 H19 H 0 1 N N N N N N -36.865 -25.746 -9.761 -2.318 2.548 -1.127 H19 X3Q 53 X3Q H20 H20 H 0 1 N N N N N N -35.865 -24.763 -11.786 -3.667 3.540 0.678 H20 X3Q 54 X3Q H21 H21 H 0 1 N N N N N N -33.397 -24.803 -12.106 -2.667 3.923 2.895 H21 X3Q 55 X3Q H22 H22 H 0 1 N N N N N N -31.971 -25.753 -10.330 -0.317 3.312 3.307 H22 X3Q 56 X3Q H23 H23 H 0 1 N N N N N N -32.968 -26.704 -8.292 1.030 2.314 1.504 H23 X3Q 57 X3Q H24 H24 H 0 1 N N N N N N -43.655 -27.036 -7.949 7.585 -0.382 0.397 H24 X3Q 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X3Q C32 C31 DOUB Y N 1 X3Q C32 C33 SING Y N 2 X3Q C31 C30 SING Y N 3 X3Q C33 C34 DOUB Y N 4 X3Q C30 C29 DOUB Y N 5 X3Q C34 C29 SING Y N 6 X3Q C29 C02 SING N N 7 X3Q C28 C27 SING N N 8 X3Q C28 N23 SING N N 9 X3Q C27 N26 SING N N 10 X3Q C02 N03 SING N N 11 X3Q C02 C01 SING N N 12 X3Q O05 C04 DOUB N N 13 X3Q C20 C19 SING Y N 14 X3Q C20 N21 DOUB Y N 15 X3Q C19 C18 DOUB Y N 16 X3Q N26 C25 SING N N 17 X3Q C04 N03 SING N N 18 X3Q C04 C06 SING N N 19 X3Q N03 C13 SING N N 20 X3Q N21 N22 SING Y N 21 X3Q N23 C06 SING N N 22 X3Q N23 C24 SING N N 23 X3Q C06 N07 DOUB N N 24 X3Q C13 C12 DOUB Y N 25 X3Q C13 C08 SING Y N 26 X3Q C18 C17 SING Y N 27 X3Q C12 C11 SING Y N 28 X3Q N22 C17 SING Y N 29 X3Q N22 C14 SING Y N 30 X3Q N07 C08 SING N N 31 X3Q C08 C09 DOUB Y N 32 X3Q C24 C25 SING N N 33 X3Q C17 N16 DOUB Y N 34 X3Q C11 C14 SING N N 35 X3Q C11 N10 DOUB Y N 36 X3Q C14 C15 DOUB Y N 37 X3Q C09 N10 SING Y N 38 X3Q N16 C15 SING Y N 39 X3Q C15 H1 SING N N 40 X3Q C12 H2 SING N N 41 X3Q C01 H3 SING N N 42 X3Q C01 H4 SING N N 43 X3Q C01 H5 SING N N 44 X3Q C02 H6 SING N N 45 X3Q C09 H7 SING N N 46 X3Q C18 H8 SING N N 47 X3Q C19 H9 SING N N 48 X3Q C20 H10 SING N N 49 X3Q C24 H11 SING N N 50 X3Q C24 H12 SING N N 51 X3Q C25 H13 SING N N 52 X3Q C25 H14 SING N N 53 X3Q C27 H15 SING N N 54 X3Q C27 H16 SING N N 55 X3Q C28 H17 SING N N 56 X3Q C28 H18 SING N N 57 X3Q C30 H19 SING N N 58 X3Q C31 H20 SING N N 59 X3Q C32 H21 SING N N 60 X3Q C33 H22 SING N N 61 X3Q C34 H23 SING N N 62 X3Q N26 H24 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X3Q SMILES ACDLabs 12.01 "CC(c1ccccc1)N1c2cc(ncc2N=C(N2CCNCC2)C1=O)c1cnc2cccnn12" X3Q InChI InChI 1.06 "InChI=1S/C25H24N8O/c1-17(18-6-3-2-4-7-18)32-21-14-19(22-16-28-23-8-5-9-29-33(22)23)27-15-20(21)30-24(25(32)34)31-12-10-26-11-13-31/h2-9,14-17,26H,10-13H2,1H3/t17-/m1/s1" X3Q InChIKey InChI 1.06 JEICNGBHPARDOJ-QGZVFWFLSA-N X3Q SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N1C(=O)C(=Nc2cnc(cc12)c3cnc4cccnn34)N5CCNCC5)c6ccccc6" X3Q SMILES CACTVS 3.385 "C[CH](N1C(=O)C(=Nc2cnc(cc12)c3cnc4cccnn34)N5CCNCC5)c6ccccc6" X3Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1ccccc1)N2c3cc(ncc3N=C(C2=O)N4CCNCC4)c5cnc6n5nccc6" X3Q SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccccc1)N2c3cc(ncc3N=C(C2=O)N4CCNCC4)c5cnc6n5nccc6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X3Q "SYSTEMATIC NAME" ACDLabs 12.01 "(7M)-7-[(4S)-imidazo[1,2-b]pyridazin-3-yl]-1-[(1R)-1-phenylethyl]-3-(piperazin-1-yl)pyrido[3,4-b]pyrazin-2(1H)-one" X3Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-imidazo[1,2-b]pyridazin-3-yl-1-[(1~{R})-1-phenylethyl]-3-piperazin-1-yl-pyrido[3,4-b]pyrazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X3Q "Create component" 2023-10-20 RCSB X3Q "Initial release" 2024-10-23 RCSB #