data_X3R # _chem_comp.id X3R _chem_comp.name "(2S)-2-cyclopropyl-2-({(4S,11aM)-2-[(4S)-2-oxo-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}amino)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 F3 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-26 _chem_comp.pdbx_modified_date 2022-11-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.399 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X3R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EXU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X3R C4 C1 C 0 1 Y N N -15.976 15.303 30.086 -1.371 1.158 -1.002 C4 X3R 1 X3R C5 C2 C 0 1 Y N N -16.658 16.083 31.004 -2.733 1.003 -1.145 C5 X3R 2 X3R C6 C3 C 0 1 Y N N -17.934 15.708 31.437 -3.434 0.188 -0.262 C6 X3R 3 X3R C11 C4 C 0 1 N N N -21.532 16.728 34.900 -6.869 1.168 1.592 C11 X3R 4 X3R C8 C5 C 0 1 N N S -19.939 16.175 32.906 -5.555 -0.823 0.519 C8 X3R 5 X3R C10 C6 C 0 1 N N N -20.297 17.101 34.078 -6.898 -0.170 0.852 C10 X3R 6 X3R C12 C7 C 0 1 N N N -20.135 16.576 35.509 -7.259 1.120 0.113 C12 X3R 7 X3R C13 C8 C 0 1 N N N -20.962 16.319 31.814 -5.794 -2.166 -0.121 C13 X3R 8 X3R C3 C9 C 0 1 Y N N -16.547 14.073 29.623 -0.707 0.511 0.060 C3 X3R 9 X3R C1 C10 C 0 1 Y N N -18.509 14.523 30.960 -2.770 -0.474 0.766 C1 X3R 10 X3R C2 C11 C 0 1 Y N N -17.835 13.733 30.050 -1.408 -0.314 0.928 C2 X3R 11 X3R N7 N1 N 0 1 N N N -18.602 16.510 32.377 -4.812 0.034 -0.408 N7 X3R 12 X3R O14 O1 O 0 1 N N N -21.836 15.479 31.722 -5.715 -2.287 -1.325 O14 X3R 13 X3R N15 N2 N 0 1 N N N -20.870 17.347 30.936 -6.096 -3.234 0.645 N15 X3R 14 X3R O16 O2 O 0 1 N N N -14.758 15.721 29.710 -0.632 1.874 -1.879 O16 X3R 15 X3R C17 C12 C 0 1 N N N -14.315 15.706 28.355 -0.192 3.192 -1.553 C17 X3R 16 X3R C18 C13 C 0 1 N N N -13.720 14.333 28.077 0.368 3.239 -0.129 C18 X3R 17 X3R N19 N3 N 0 1 Y N N -14.768 13.348 27.861 1.219 2.076 0.116 N19 X3R 18 X3R C20 C14 C 0 1 Y N N -15.954 13.188 28.572 0.734 0.794 0.221 C20 X3R 19 X3R N21 N4 N 0 1 Y N N -16.566 12.147 28.056 1.731 -0.011 0.457 N21 X3R 20 X3R C22 C15 C 0 1 Y N N -15.833 11.564 27.095 2.872 0.700 0.503 C22 X3R 21 X3R C23 C16 C 0 1 Y N N -14.711 12.314 26.959 2.571 2.006 0.289 C23 X3R 22 X3R N24 N5 N 0 1 N N N -16.262 10.442 26.338 4.157 0.180 0.733 N24 X3R 23 X3R C25 C17 C 0 1 N N S -17.460 9.639 26.663 5.128 -0.191 -0.307 C25 X3R 24 X3R C27 C18 C 0 1 N N N -17.702 8.824 25.376 6.346 -0.694 0.491 C27 X3R 25 X3R O28 O3 O 0 1 N N N -16.428 8.919 24.681 5.938 -0.555 1.883 O28 X3R 26 X3R C29 C19 C 0 1 N N N -15.748 9.965 25.176 4.699 -0.054 1.936 C29 X3R 27 X3R O30 O4 O 0 1 N N N -14.747 10.401 24.626 4.115 0.163 2.980 O30 X3R 28 X3R C31 C20 C 0 1 N N N -17.226 8.728 27.883 4.568 -1.306 -1.193 C31 X3R 29 X3R F32 F1 F 0 1 N N N -16.449 7.603 27.572 5.552 -1.722 -2.097 F32 X3R 30 X3R F33 F2 F 0 1 N N N -16.608 9.412 28.929 4.183 -2.387 -0.393 F33 X3R 31 X3R F34 F3 F 0 1 N N N -18.453 8.312 28.372 3.458 -0.828 -1.898 F34 X3R 32 X3R H1 H1 H 0 1 N N N -16.203 16.984 31.387 -3.256 1.514 -1.941 H1 X3R 33 X3R H2 H2 H 0 1 N N N -22.208 17.515 35.265 -7.661 1.361 2.316 H2 X3R 34 X3R H3 H3 H 0 1 N N N -22.118 15.835 34.638 -5.893 1.584 1.842 H3 X3R 35 X3R H9 H4 H 0 1 N N N -19.941 15.135 33.266 -4.978 -0.954 1.434 H9 X3R 36 X3R H4 H5 H 0 1 N N N -20.114 18.175 33.926 -7.709 -0.859 1.089 H4 X3R 37 X3R H5 H6 H 0 1 N N N -19.717 15.574 35.683 -8.307 1.281 -0.136 H5 X3R 38 X3R H6 H7 H 0 1 N N N -19.807 17.255 36.310 -6.539 1.504 -0.609 H6 X3R 39 X3R H7 H8 H 0 1 N N N -19.487 14.225 31.307 -3.321 -1.115 1.438 H7 X3R 40 X3R H8 H9 H 0 1 N N N -18.308 12.842 29.663 -0.891 -0.828 1.725 H8 X3R 41 X3R H10 H10 H 0 1 N N N -17.997 16.568 33.171 -5.279 0.494 -1.123 H10 X3R 42 X3R H11 H11 H 0 1 N N N -21.531 17.428 30.190 -6.089 -3.154 1.612 H11 X3R 43 X3R H12 H12 H 0 1 N N N -20.141 18.025 31.034 -6.321 -4.081 0.229 H12 X3R 44 X3R H13 H13 H 0 1 N N N -13.552 16.483 28.202 0.584 3.496 -2.255 H13 X3R 45 X3R H14 H14 H 0 1 N N N -15.165 15.889 27.681 -1.034 3.881 -1.629 H14 X3R 46 X3R H15 H15 H 0 1 N N N -13.108 14.025 28.937 0.955 4.149 -0.001 H15 X3R 47 X3R H16 H16 H 0 1 N N N -13.088 14.389 27.179 -0.456 3.238 0.585 H16 X3R 48 X3R H17 H17 H 0 1 N N N -13.909 12.129 26.260 3.267 2.830 0.260 H17 X3R 49 X3R H26 H18 H 0 1 N N N -18.323 10.295 26.852 5.395 0.678 -0.910 H26 X3R 50 X3R H18 H19 H 0 1 N N N -18.513 9.264 24.777 6.553 -1.738 0.256 H18 X3R 51 X3R H19 H20 H 0 1 N N N -17.946 7.778 25.611 7.221 -0.077 0.284 H19 X3R 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X3R O30 C29 DOUB N N 1 X3R O28 C29 SING N N 2 X3R O28 C27 SING N N 3 X3R C29 N24 SING N N 4 X3R C27 C25 SING N N 5 X3R N24 C25 SING N N 6 X3R N24 C22 SING N N 7 X3R C25 C31 SING N N 8 X3R C23 C22 DOUB Y N 9 X3R C23 N19 SING Y N 10 X3R C22 N21 SING Y N 11 X3R F32 C31 SING N N 12 X3R N19 C18 SING N N 13 X3R N19 C20 SING Y N 14 X3R C31 F34 SING N N 15 X3R C31 F33 SING N N 16 X3R N21 C20 DOUB Y N 17 X3R C18 C17 SING N N 18 X3R C17 O16 SING N N 19 X3R C20 C3 SING N N 20 X3R C3 C2 DOUB Y N 21 X3R C3 C4 SING Y N 22 X3R O16 C4 SING N N 23 X3R C2 C1 SING Y N 24 X3R C4 C5 DOUB Y N 25 X3R N15 C13 SING N N 26 X3R C1 C6 DOUB Y N 27 X3R C5 C6 SING Y N 28 X3R C6 N7 SING N N 29 X3R O14 C13 DOUB N N 30 X3R C13 C8 SING N N 31 X3R N7 C8 SING N N 32 X3R C8 C10 SING N N 33 X3R C10 C11 SING N N 34 X3R C10 C12 SING N N 35 X3R C11 C12 SING N N 36 X3R C5 H1 SING N N 37 X3R C11 H2 SING N N 38 X3R C11 H3 SING N N 39 X3R C8 H9 SING N N 40 X3R C10 H4 SING N N 41 X3R C12 H5 SING N N 42 X3R C12 H6 SING N N 43 X3R C1 H7 SING N N 44 X3R C2 H8 SING N N 45 X3R N7 H10 SING N N 46 X3R N15 H11 SING N N 47 X3R N15 H12 SING N N 48 X3R C17 H13 SING N N 49 X3R C17 H14 SING N N 50 X3R C18 H15 SING N N 51 X3R C18 H16 SING N N 52 X3R C23 H17 SING N N 53 X3R C25 H26 SING N N 54 X3R C27 H18 SING N N 55 X3R C27 H19 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X3R SMILES ACDLabs 12.01 "FC(F)(F)C1COC(=O)N1c1nc2c3ccc(NC(C(N)=O)C4CC4)cc3OCCn2c1" X3R InChI InChI 1.06 "InChI=1S/C20H20F3N5O4/c21-20(22,23)14-9-32-19(30)28(14)15-8-27-5-6-31-13-7-11(3-4-12(13)18(27)26-15)25-16(17(24)29)10-1-2-10/h3-4,7-8,10,14,16,25H,1-2,5-6,9H2,(H2,24,29)/t14-,16-/m0/s1" X3R InChIKey InChI 1.06 NZDUMFRYZCPIIG-HOCLYGCPSA-N X3R SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H](Nc1ccc2c(OCCn3cc(nc23)N4[C@@H](COC4=O)C(F)(F)F)c1)C5CC5" X3R SMILES CACTVS 3.385 "NC(=O)[CH](Nc1ccc2c(OCCn3cc(nc23)N4[CH](COC4=O)C(F)(F)F)c1)C5CC5" X3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc-2c(cc1N[C@@H](C3CC3)C(=O)N)OCCn4c2nc(c4)N5[C@@H](COC5=O)C(F)(F)F" X3R SMILES "OpenEye OEToolkits" 2.0.7 "c1cc-2c(cc1NC(C3CC3)C(=O)N)OCCn4c2nc(c4)N5C(COC5=O)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X3R "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-cyclopropyl-2-({(4S,11aM)-2-[(4S)-2-oxo-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}amino)acetamide" X3R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-cyclopropyl-2-[[2-[(4~{S})-2-oxidanylidene-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl]amino]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X3R "Create component" 2022-10-26 RCSB X3R "Initial release" 2022-11-30 RCSB #