data_X54 # _chem_comp.id X54 _chem_comp.name "1-({4-[(3-aminopropyl)amino]butyl}amino)ethane-1,1-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H23 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-30 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 205.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X54 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KUS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X54 C13 C1 C 0 1 N N N 29.868 39.825 32.874 6.418 -0.382 -0.010 C13 X54 1 X54 C01 C2 C 0 1 N N N 18.731 40.843 34.661 -5.886 -0.861 0.019 C01 X54 2 X54 C02 C3 C 0 1 N N N 19.925 39.961 34.276 -4.685 0.086 -0.007 C02 X54 3 X54 C06 C4 C 0 1 N N N 22.372 39.858 34.543 -2.265 0.181 -0.013 C06 X54 4 X54 C07 C5 C 0 1 N N N 23.566 40.193 35.449 -0.994 -0.670 0.007 C07 X54 5 X54 C08 C6 C 0 1 N N N 24.901 39.893 34.761 0.232 0.245 -0.018 C08 X54 6 X54 C09 C7 C 0 1 N N N 26.121 39.819 35.690 1.504 -0.606 0.002 C09 X54 7 X54 C11 C8 C 0 1 N N N 28.317 39.160 34.911 3.923 -0.512 -0.003 C11 X54 8 X54 C12 C9 C 0 1 N N N 29.709 39.564 34.378 5.125 0.435 -0.030 C12 X54 9 X54 N05 N1 N 0 1 N N N 21.102 40.373 35.050 -3.443 -0.698 0.011 N05 X54 10 X54 N10 N2 N 0 1 N N N 27.333 40.235 34.986 2.681 0.272 -0.022 N10 X54 11 X54 N14 N3 N 0 1 N N N 31.097 40.560 32.598 7.572 0.528 -0.035 N14 X54 12 X54 O03 O1 O 0 1 N N N 19.574 38.637 34.552 -4.729 0.880 -1.195 O03 X54 13 X54 O04 O2 O 0 1 N N N 20.104 40.103 32.908 -4.726 0.941 1.137 O04 X54 14 X54 H1 H1 H 0 1 N N N 29.009 40.413 32.518 6.452 -0.986 0.896 H1 X54 15 X54 H2 H2 H 0 1 N N N 29.898 38.862 32.343 6.450 -1.033 -0.883 H2 X54 16 X54 H3 H3 H 0 1 N N N 18.549 40.763 35.743 -5.854 -1.512 -0.854 H3 X54 17 X54 H4 H4 H 0 1 N N N 18.950 41.890 34.402 -5.852 -1.466 0.925 H4 X54 18 X54 H5 H5 H 0 1 N N N 17.837 40.509 34.114 -6.808 -0.279 0.005 H5 X54 19 X54 H6 H6 H 0 1 N N N 22.296 38.764 34.456 -2.280 0.833 0.860 H6 X54 20 X54 H7 H7 H 0 1 N N N 22.554 40.293 33.549 -2.283 0.786 -0.919 H7 X54 21 X54 H8 H8 H 0 1 N N N 23.530 41.262 35.706 -0.976 -1.276 0.913 H8 X54 22 X54 H9 H9 H 0 1 N N N 23.496 39.592 36.368 -0.979 -1.322 -0.866 H9 X54 23 X54 H10 H10 H 0 1 N N N 24.807 38.925 34.247 0.215 0.850 -0.924 H10 X54 24 X54 H11 H11 H 0 1 N N N 25.086 40.685 34.021 0.218 0.897 0.855 H11 X54 25 X54 H12 H12 H 0 1 N N N 25.959 40.482 36.552 1.521 -1.212 0.908 H12 X54 26 X54 H13 H13 H 0 1 N N N 26.245 38.784 36.041 1.519 -1.258 -0.871 H13 X54 27 X54 H14 H14 H 0 1 N N N 27.915 38.379 34.249 3.955 -1.163 -0.877 H14 X54 28 X54 H15 H15 H 0 1 N N N 28.448 38.750 35.923 3.957 -1.117 0.903 H15 X54 29 X54 H16 H16 H 0 1 N N N 30.406 38.755 34.643 5.093 1.087 0.844 H16 X54 30 X54 H17 H17 H 0 1 N N N 30.002 40.486 34.901 5.091 1.040 -0.936 H17 X54 31 X54 H18 H18 H 0 1 N N N 21.146 41.372 35.044 -3.417 -1.315 0.809 H18 X54 32 X54 H20 H20 H 0 1 N N N 27.738 41.010 35.471 2.657 0.930 0.742 H20 X54 33 X54 H22 H22 H 0 1 N N N 31.178 40.718 31.614 7.531 1.185 0.729 H22 X54 34 X54 H23 H23 H 0 1 N N N 31.074 41.438 33.075 8.439 0.012 -0.023 H23 X54 35 X54 H25 H25 H 0 1 N N N 19.449 38.530 35.488 -4.705 0.364 -2.013 H25 X54 36 X54 H26 H26 H 0 1 N N N 20.343 41.001 32.711 -4.699 0.469 1.981 H26 X54 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X54 N14 C13 SING N N 1 X54 C13 C12 SING N N 2 X54 O04 C02 SING N N 3 X54 C02 O03 SING N N 4 X54 C02 C01 SING N N 5 X54 C02 N05 SING N N 6 X54 C12 C11 SING N N 7 X54 C06 N05 SING N N 8 X54 C06 C07 SING N N 9 X54 C08 C07 SING N N 10 X54 C08 C09 SING N N 11 X54 C11 N10 SING N N 12 X54 N10 C09 SING N N 13 X54 C13 H1 SING N N 14 X54 C13 H2 SING N N 15 X54 C01 H3 SING N N 16 X54 C01 H4 SING N N 17 X54 C01 H5 SING N N 18 X54 C06 H6 SING N N 19 X54 C06 H7 SING N N 20 X54 C07 H8 SING N N 21 X54 C07 H9 SING N N 22 X54 C08 H10 SING N N 23 X54 C08 H11 SING N N 24 X54 C09 H12 SING N N 25 X54 C09 H13 SING N N 26 X54 C11 H14 SING N N 27 X54 C11 H15 SING N N 28 X54 C12 H16 SING N N 29 X54 C12 H17 SING N N 30 X54 N05 H18 SING N N 31 X54 N10 H20 SING N N 32 X54 N14 H22 SING N N 33 X54 N14 H23 SING N N 34 X54 O03 H25 SING N N 35 X54 O04 H26 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X54 SMILES ACDLabs 12.01 "C(CCNCCCCNC(C)(O)O)N" X54 InChI InChI 1.03 "InChI=1S/C9H23N3O2/c1-9(13,14)12-8-3-2-6-11-7-4-5-10/h11-14H,2-8,10H2,1H3" X54 InChIKey InChI 1.03 WAYWJVQKELFVTE-UHFFFAOYSA-N X54 SMILES_CANONICAL CACTVS 3.385 "CC(O)(O)NCCCCNCCCN" X54 SMILES CACTVS 3.385 "CC(O)(O)NCCCCNCCCN" X54 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(NCCCCNCCCN)(O)O" X54 SMILES "OpenEye OEToolkits" 2.0.7 "CC(NCCCCNCCCN)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X54 "SYSTEMATIC NAME" ACDLabs 12.01 "1-({4-[(3-aminopropyl)amino]butyl}amino)ethane-1,1-diol" X54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-(3-azanylpropylamino)butylamino]ethane-1,1-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X54 "Create component" 2020-11-30 RCSB X54 "Initial release" 2021-02-03 RCSB ##