data_X56 # _chem_comp.id X56 _chem_comp.name "(6~{R},7~{R})-3-[(5-methyl-1,3,4-thiadiazol-2-yl)sulfanylmethyl]-8-oxidanylidene-7-[2-(1,2,3,4-tetrazol-1-yl)ethanoylamino]-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 N8 O4 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms cefazolin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-30 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.507 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X56 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X56 S1 S1 S 0 1 N N N N N N ? ? ? 0.963 -2.000 -0.401 S1 X56 1 X56 C1 C1 C 0 1 N N R N N N ? ? ? 1.311 -0.596 -1.511 C1 X56 2 X56 C2 C2 C 0 1 N N R N N N ? ? ? 2.611 0.151 -1.231 C2 X56 3 X56 C3 C3 C 0 1 N N N N N N ? ? ? 1.747 1.341 -0.850 C3 X56 4 X56 C4 C4 C 0 1 N N N N N N ? ? ? -0.684 0.634 -0.405 C4 X56 5 X56 C5 C5 C 0 1 N N N N N N ? ? ? -1.325 -0.490 -0.119 C5 X56 6 X56 O1 O1 O 0 1 N N N N N N ? ? ? 1.970 2.509 -0.609 O1 X56 7 X56 O2 O2 O 0 1 N N N N N N ? ? ? -1.949 2.448 -1.145 O2 X56 8 X56 N1 N1 N 0 1 N N N N N N ? ? ? 0.635 0.586 -0.887 N1 X56 9 X56 C6 C6 C 0 1 N N N N N N ? ? ? -0.849 -1.896 -0.283 C6 X56 10 X56 C7 C7 C 0 1 N N N N N N ? ? ? -2.712 -0.328 0.446 C7 X56 11 X56 C8 C8 C 0 1 N N N N N N ? ? ? -1.354 1.933 -0.219 C8 X56 12 X56 O3 O3 O 0 1 N N N N N N ? ? ? -1.308 2.550 0.978 O3 X56 13 X56 N2 N2 N 0 1 N N N N N N ? ? ? 3.377 -0.401 -0.111 N2 X56 14 X56 C9 C9 C 0 1 N N N N N N ? ? ? 4.710 -0.214 -0.049 C9 X56 15 X56 O4 O4 O 0 1 N N N N N N ? ? ? 5.276 0.411 -0.920 O4 X56 16 X56 C10 C10 C 0 1 N N N N N N ? ? ? 5.498 -0.783 1.104 C10 X56 17 X56 N3 N3 N 0 1 Y N N N N N ? ? ? 6.914 -0.445 0.941 N3 X56 18 X56 C11 C11 C 0 1 Y N N N N N ? ? ? -5.420 -0.398 0.059 C11 X56 19 X56 C12 C12 C 0 1 Y N N N N N ? ? ? 7.694 0.186 1.838 C12 X56 20 X56 C13 C13 C 0 1 Y N N N N N ? ? ? -7.676 -0.113 1.030 C13 X56 21 X56 S2 S2 S 0 1 N N N N N N ? ? ? -3.933 -0.650 -0.851 S2 X56 22 X56 C14 C14 C 0 1 N N N N N N ? ? ? -9.126 0.008 1.421 C14 X56 23 X56 N4 N4 N 0 1 Y N N N N N ? ? ? 7.650 -0.701 -0.088 N4 X56 24 X56 N5 N5 N 0 1 Y N N N N N ? ? ? -5.506 -0.066 1.317 N5 X56 25 X56 N6 N6 N 0 1 Y N N N N N ? ? ? 8.884 0.287 1.297 N6 X56 26 X56 N7 N7 N 0 1 Y N N N N N ? ? ? 8.838 -0.256 0.130 N7 X56 27 X56 N8 N8 N 0 1 Y N N N N N ? ? ? -6.659 0.078 1.806 N8 X56 28 X56 S3 S3 S 0 1 Y N N N N N ? ? ? -7.064 -0.542 -0.569 S3 X56 29 X56 H1 H1 H 0 1 N N N N N N ? ? ? 1.095 -0.786 -2.562 H1 X56 30 X56 H2 H2 H 0 1 N N N N N N ? ? ? 3.220 0.317 -2.119 H2 X56 31 X56 H5 H5 H 0 1 N N N N N N ? ? ? -1.287 -2.314 -1.190 H5 X56 32 X56 H6 H6 H 0 1 N N N N N N ? ? ? -1.182 -2.484 0.572 H6 X56 33 X56 H7 H7 H 0 1 N N N N N N ? ? ? -2.856 -1.034 1.264 H7 X56 34 X56 H8 H8 H 0 1 N N N N N N ? ? ? -2.837 0.689 0.818 H8 X56 35 X56 H9 H9 H 0 1 N N N N N N ? ? ? -1.762 3.401 1.052 H9 X56 36 X56 H10 H10 H 0 1 N N N N N N ? ? ? 2.924 -0.901 0.586 H10 X56 37 X56 H11 H11 H 0 1 N N N N N N ? ? ? 5.129 -0.361 2.039 H11 X56 38 X56 H12 H12 H 0 1 N N N N N N ? ? ? 5.383 -1.866 1.123 H12 X56 39 X56 H13 H13 H 0 1 N N N N N N ? ? ? 7.398 0.540 2.814 H13 X56 40 X56 H14 H14 H 0 1 N N N N N N ? ? ? -9.463 1.031 1.255 H14 X56 41 X56 H15 H15 H 0 1 N N N N N N ? ? ? -9.723 -0.675 0.817 H15 X56 42 X56 H16 H16 H 0 1 N N N N N N ? ? ? -9.240 -0.245 2.476 H16 X56 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X56 C1 C2 SING N N 1 X56 C1 S1 SING N N 2 X56 C1 N1 SING N N 3 X56 C2 N2 SING N N 4 X56 C2 C3 SING N N 5 X56 N2 C9 SING N N 6 X56 S1 C6 SING N N 7 X56 O2 C8 DOUB N N 8 X56 C6 C5 SING N N 9 X56 N1 C3 SING N N 10 X56 N1 C4 SING N N 11 X56 C3 O1 DOUB N N 12 X56 C12 N6 DOUB Y N 13 X56 C12 N3 SING Y N 14 X56 C8 O3 SING N N 15 X56 C8 C4 SING N N 16 X56 C9 O4 DOUB N N 17 X56 C9 C10 SING N N 18 X56 C4 C5 DOUB N N 19 X56 C10 N3 SING N N 20 X56 C5 C7 SING N N 21 X56 N6 N7 SING Y N 22 X56 N3 N4 SING Y N 23 X56 N7 N4 DOUB Y N 24 X56 C7 S2 SING N N 25 X56 S2 C11 SING N N 26 X56 C11 S3 SING Y N 27 X56 C11 N5 DOUB Y N 28 X56 S3 C13 SING Y N 29 X56 N5 N8 SING Y N 30 X56 C13 N8 DOUB Y N 31 X56 C13 C14 SING N N 32 X56 C1 H1 SING N N 33 X56 C2 H2 SING N N 34 X56 C6 H5 SING N N 35 X56 C6 H6 SING N N 36 X56 C7 H7 SING N N 37 X56 C7 H8 SING N N 38 X56 O3 H9 SING N N 39 X56 N2 H10 SING N N 40 X56 C10 H11 SING N N 41 X56 C10 H12 SING N N 42 X56 C12 H13 SING N N 43 X56 C14 H14 SING N N 44 X56 C14 H15 SING N N 45 X56 C14 H16 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X56 InChI InChI 1.06 "InChI=1S/C14H14N8O4S3/c1-6-17-18-14(29-6)28-4-7-3-27-12-9(11(24)22(12)10(7)13(25)26)16-8(23)2-21-5-15-19-20-21/h5,9,12H,2-4H2,1H3,(H,16,23)(H,25,26)/t9-,12-/m1/s1" X56 InChIKey InChI 1.06 MLYYVTUWGNIJIB-BXKDBHETSA-N X56 SMILES_CANONICAL CACTVS 3.385 "Cc1sc(SCC2=C(N3[C@H](SC2)[C@H](NC(=O)Cn4cnnn4)C3=O)C(O)=O)nn1" X56 SMILES CACTVS 3.385 "Cc1sc(SCC2=C(N3[CH](SC2)[CH](NC(=O)Cn4cnnn4)C3=O)C(O)=O)nn1" X56 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnc(s1)SCC2=C(N3[C@@H]([C@@H](C3=O)NC(=O)Cn4cnnn4)SC2)C(=O)O" X56 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nnc(s1)SCC2=C(N3C(C(C3=O)NC(=O)Cn4cnnn4)SC2)C(=O)O" # _pdbx_chem_comp_identifier.comp_id X56 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{R},7~{R})-3-[(5-methyl-1,3,4-thiadiazol-2-yl)sulfanylmethyl]-8-oxidanylidene-7-[2-(1,2,3,4-tetrazol-1-yl)ethanoylamino]-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X56 "Create component" 2023-10-30 PDBC X56 "Initial release" 2024-08-07 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X56 _pdbx_chem_comp_synonyms.name cefazolin _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #