data_X5B # _chem_comp.id X5B _chem_comp.name "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(pyridazin-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H31 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-27 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.002 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ECW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5B N1 N1 N 0 1 N N N -36.069 -30.212 -68.961 -6.343 0.039 0.097 N1 X5B 1 X5B N3 N2 N 0 1 Y N N -46.275 -27.858 -70.770 9.964 2.280 -0.638 N3 X5B 2 X5B C4 C1 C 0 1 N N N -34.279 -28.621 -68.560 -7.023 2.242 0.919 C4 X5B 3 X5B C5 C2 C 0 1 N N N -36.866 -29.558 -68.331 -4.989 0.577 -0.085 C5 X5B 4 X5B C6 C3 C 0 1 N N N -37.125 -30.193 -66.944 -3.961 -0.509 0.237 C6 X5B 5 X5B C7 C4 C 0 1 Y N N -38.524 -29.797 -66.360 -2.571 0.043 0.051 C7 X5B 6 X5B C8 C5 C 0 1 Y N N -38.612 -29.215 -65.091 -1.920 0.648 1.110 C8 X5B 7 X5B C10 C6 C 0 1 Y N N -41.029 -29.092 -65.320 -0.021 1.056 -0.290 C10 X5B 8 X5B C13 C7 C 0 1 Y N N -45.267 -26.357 -65.406 4.860 0.249 -0.098 C13 X5B 9 X5B C15 C8 C 0 1 Y N N -46.472 -26.086 -67.490 7.245 -0.051 -0.021 C15 X5B 10 X5B C17 C9 C 0 1 Y N N -47.376 -25.561 -69.813 9.724 -0.345 -0.044 C17 X5B 11 X5B C20 C10 C 0 1 Y N N -47.335 -25.208 -66.876 7.061 -1.370 0.387 C20 X5B 12 X5B C21 C11 C 0 1 Y N N -47.172 -24.899 -65.526 5.784 -1.874 0.545 C21 X5B 13 X5B C22 C12 C 0 1 Y N N -46.130 -25.481 -64.794 4.685 -1.068 0.309 C22 X5B 14 X5B C24 C13 C 0 1 Y N N -39.690 -30.028 -67.109 -1.945 -0.060 -1.177 C24 X5B 15 X5B C26 C14 C 0 1 N N S -35.444 -32.568 -69.652 -7.960 -1.694 -0.525 C26 X5B 16 X5B C1 C15 C 0 1 N N R -34.160 -32.412 -69.005 -9.052 -0.628 -0.650 C1 X5B 17 X5B O1 O1 O 0 1 N N N -33.158 -33.263 -69.717 -10.316 -1.196 -0.305 O1 X5B 18 X5B C2 C16 C 0 1 N N R -33.708 -31.018 -69.045 -8.734 0.531 0.298 C2 X5B 19 X5B N2 N3 N 0 1 N N N -44.170 -26.969 -64.633 3.747 1.061 -0.335 N2 X5B 20 X5B O2 O2 O 0 1 N N N -32.467 -30.911 -68.334 -9.719 1.556 0.146 O2 X5B 21 X5B C3 C17 C 0 1 N N R -34.747 -30.073 -68.389 -7.353 1.097 -0.039 C3 X5B 22 X5B O3 O3 O 0 1 N N N -34.476 -28.248 -69.893 -7.100 1.773 2.267 O3 X5B 23 X5B N4 N4 N 0 1 Y N N -46.139 -27.524 -69.475 8.794 1.774 -0.483 N4 X5B 24 X5B O4 O4 O 0 1 N N N -35.899 -33.923 -69.464 -8.219 -2.753 -1.447 O4 X5B 25 X5B C9 C18 C 0 1 Y N N -39.861 -28.861 -64.569 -0.645 1.155 0.939 C9 X5B 26 X5B C11 C19 C 0 1 N N N -42.401 -28.704 -64.745 1.368 1.609 -0.477 C11 X5B 27 X5B C12 C20 C 0 1 N N N -42.916 -27.353 -65.305 2.397 0.523 -0.154 C12 X5B 28 X5B C14 C21 C 0 1 Y N N -45.430 -26.668 -66.760 6.139 0.760 -0.264 C14 X5B 29 X5B C16 C22 C 0 1 Y N N -46.655 -26.426 -68.984 8.615 0.491 -0.191 C16 X5B 30 X5B C18 C23 C 0 1 Y N N -47.516 -25.921 -71.180 10.983 0.211 -0.213 C18 X5B 31 X5B C19 C24 C 0 1 Y N N -46.928 -27.115 -71.620 11.064 1.562 -0.518 C19 X5B 32 X5B C23 C25 C 0 1 Y N N -40.942 -29.673 -66.585 -0.670 0.447 -1.348 C23 X5B 33 X5B C25 C26 C 0 1 N N N -36.525 -31.595 -69.097 -6.601 -1.064 -0.838 C25 X5B 34 X5B CL1 CL1 CL 0 0 N N N -48.290 -23.764 -64.734 5.558 -3.518 1.054 CL1 X5B 35 X5B H2 H2 H 0 1 N N N -33.212 -28.542 -68.306 -6.015 2.605 0.718 H2 X5B 36 X5B H3 H3 H 0 1 N N N -34.862 -27.962 -67.900 -7.736 3.054 0.776 H3 X5B 37 X5B H4 H4 H 0 1 N N N -36.469 -28.541 -68.194 -4.862 0.903 -1.117 H4 X5B 38 X5B H5 H5 H 0 1 N N N -37.813 -29.510 -68.888 -4.842 1.425 0.584 H5 X5B 39 X5B H6 H6 H 0 1 N N N -37.080 -31.288 -67.042 -4.087 -0.835 1.270 H6 X5B 40 X5B H7 H7 H 0 1 N N N -36.343 -29.855 -66.249 -4.107 -1.357 -0.432 H7 X5B 41 X5B H8 H8 H 0 1 N N N -37.716 -29.039 -64.514 -2.408 0.725 2.070 H8 X5B 42 X5B H9 H9 H 0 1 N N N -47.811 -24.651 -69.427 9.605 -1.392 0.194 H9 X5B 43 X5B H10 H10 H 0 1 N N N -48.139 -24.758 -67.440 7.917 -2.001 0.576 H10 X5B 44 X5B H11 H11 H 0 1 N N N -46.005 -25.241 -63.748 3.688 -1.463 0.442 H11 X5B 45 X5B H12 H12 H 0 1 N N N -39.622 -30.479 -68.088 -2.451 -0.537 -2.003 H12 X5B 46 X5B H13 H13 H 0 1 N N N -35.333 -32.369 -70.728 -7.952 -2.089 0.491 H13 X5B 47 X5B H14 H14 H 0 1 N N N -34.231 -32.743 -67.958 -9.086 -0.260 -1.676 H14 X5B 48 X5B H15 H15 H 0 1 N N N -32.309 -33.169 -69.301 -10.579 -1.941 -0.864 H15 X5B 49 X5B H16 H16 H 0 1 N N N -33.569 -30.708 -70.091 -8.739 0.172 1.327 H16 X5B 50 X5B H17 H17 H 0 1 N N N -43.924 -26.317 -63.916 3.869 1.980 -0.620 H17 X5B 51 X5B H18 H18 H 0 1 N N N -32.166 -30.010 -68.355 -10.621 1.267 0.341 H18 X5B 52 X5B H19 H19 H 0 1 N N N -34.786 -30.300 -67.313 -7.353 1.469 -1.064 H19 X5B 53 X5B H20 H20 H 0 1 N N N -34.191 -27.350 -70.017 -6.902 2.448 2.930 H20 X5B 54 X5B H21 H21 H 0 1 N N N -35.246 -34.526 -69.800 -7.564 -3.464 -1.424 H21 X5B 55 X5B H22 H22 H 0 1 N N N -39.929 -28.410 -63.590 -0.137 1.628 1.766 H22 X5B 56 X5B H23 H23 H 0 1 N N N -43.126 -29.491 -64.999 1.495 1.934 -1.509 H23 X5B 57 X5B H24 H24 H 0 1 N N N -42.316 -28.624 -63.651 1.514 2.458 0.192 H24 X5B 58 X5B H25 H25 H 0 1 N N N -42.158 -26.575 -65.132 2.251 -0.325 -0.822 H25 X5B 59 X5B H26 H26 H 0 1 N N N -43.098 -27.453 -66.385 2.270 0.198 0.879 H26 X5B 60 X5B H27 H27 H 0 1 N N N -44.752 -27.357 -67.242 6.276 1.783 -0.581 H27 X5B 61 X5B H28 H28 H 0 1 N N N -48.063 -25.289 -71.864 11.875 -0.390 -0.111 H28 X5B 62 X5B H29 H29 H 0 1 N N N -47.015 -27.417 -72.653 12.030 2.026 -0.656 H29 X5B 63 X5B H30 H30 H 0 1 N N N -41.838 -29.850 -67.161 -0.181 0.366 -2.307 H30 X5B 64 X5B H31 H31 H 0 1 N N N -37.387 -31.609 -69.781 -6.604 -0.682 -1.859 H31 X5B 65 X5B H32 H32 H 0 1 N N N -36.838 -31.955 -68.106 -5.819 -1.817 -0.735 H32 X5B 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5B C19 C18 DOUB Y N 1 X5B C19 N3 SING Y N 2 X5B C18 C17 SING Y N 3 X5B N3 N4 DOUB Y N 4 X5B O3 C4 SING N N 5 X5B C17 C16 DOUB Y N 6 X5B O1 C1 SING N N 7 X5B C26 O4 SING N N 8 X5B C26 C25 SING N N 9 X5B C26 C1 SING N N 10 X5B N4 C16 SING Y N 11 X5B C25 N1 SING N N 12 X5B C2 C1 SING N N 13 X5B C2 C3 SING N N 14 X5B C2 O2 SING N N 15 X5B C16 C15 SING N N 16 X5B N1 C3 SING N N 17 X5B N1 C5 SING N N 18 X5B C4 C3 SING N N 19 X5B C5 C6 SING N N 20 X5B C15 C20 DOUB Y N 21 X5B C15 C14 SING Y N 22 X5B C24 C23 DOUB Y N 23 X5B C24 C7 SING Y N 24 X5B C6 C7 SING N N 25 X5B C20 C21 SING Y N 26 X5B C14 C13 DOUB Y N 27 X5B C23 C10 SING Y N 28 X5B C7 C8 DOUB Y N 29 X5B C21 C22 DOUB Y N 30 X5B C21 CL1 SING N N 31 X5B C13 C22 SING Y N 32 X5B C13 N2 SING N N 33 X5B C10 C11 SING N N 34 X5B C10 C9 DOUB Y N 35 X5B C12 C11 SING N N 36 X5B C12 N2 SING N N 37 X5B C8 C9 SING Y N 38 X5B C4 H2 SING N N 39 X5B C4 H3 SING N N 40 X5B C5 H4 SING N N 41 X5B C5 H5 SING N N 42 X5B C6 H6 SING N N 43 X5B C6 H7 SING N N 44 X5B C8 H8 SING N N 45 X5B C17 H9 SING N N 46 X5B C20 H10 SING N N 47 X5B C22 H11 SING N N 48 X5B C24 H12 SING N N 49 X5B C26 H13 SING N N 50 X5B C1 H14 SING N N 51 X5B O1 H15 SING N N 52 X5B C2 H16 SING N N 53 X5B N2 H17 SING N N 54 X5B O2 H18 SING N N 55 X5B C3 H19 SING N N 56 X5B O3 H20 SING N N 57 X5B O4 H21 SING N N 58 X5B C9 H22 SING N N 59 X5B C11 H23 SING N N 60 X5B C11 H24 SING N N 61 X5B C12 H25 SING N N 62 X5B C12 H26 SING N N 63 X5B C14 H27 SING N N 64 X5B C18 H28 SING N N 65 X5B C19 H29 SING N N 66 X5B C23 H30 SING N N 67 X5B C25 H31 SING N N 68 X5B C25 H32 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5B SMILES ACDLabs 12.01 "Clc1cc(cc(c1)NCCc1ccc(CCN2CC(O)C(O)C(O)C2CO)cc1)c1cccnn1" X5B InChI InChI 1.06 "InChI=1S/C26H31ClN4O4/c27-20-12-19(22-2-1-9-29-30-22)13-21(14-20)28-10-7-17-3-5-18(6-4-17)8-11-31-15-24(33)26(35)25(34)23(31)16-32/h1-6,9,12-14,23-26,28,32-35H,7-8,10-11,15-16H2/t23-,24+,25-,26-/m1/s1" X5B InChIKey InChI 1.06 OCKWGRBGNLPCDQ-XDZVQPMWSA-N X5B SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4cccnn4)cc2" X5B SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4cccnn4)cc2" X5B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(nnc1)c2cc(cc(c2)Cl)NCCc3ccc(cc3)CCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O" X5B SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(nnc1)c2cc(cc(c2)Cl)NCCc3ccc(cc3)CCN4CC(C(C(C4CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X5B "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(pyridazin-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" X5B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[2-[4-[2-[(3-chloranyl-5-pyridazin-3-yl-phenyl)amino]ethyl]phenyl]ethyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5B "Create component" 2022-10-27 RCSB X5B "Initial release" 2023-02-22 RCSB #