data_X5F # _chem_comp.id X5F _chem_comp.name "2-[[(2~{R})-1-azanyl-5-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]carbamoyl]-6-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethylamino]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 N5 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-28 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 579.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EYL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5F C02 C1 C 0 1 N N N 26.542 9.061 14.589 4.839 0.377 -0.057 C02 X5F 1 X5F C04 C2 C 0 1 N N R 29.081 9.049 14.833 6.872 -0.802 -0.700 C04 X5F 2 X5F C05 C3 C 0 1 N N N 29.665 9.368 13.460 7.960 0.236 -0.611 C05 X5F 3 X5F C08 C4 C 0 1 N N N 30.058 9.260 15.997 7.457 -2.181 -0.389 C08 X5F 4 X5F C09 C5 C 0 1 N N N 29.775 8.331 17.177 6.383 -3.250 -0.600 C09 X5F 5 X5F C10 C6 C 0 1 N N N 28.656 8.867 18.070 6.959 -4.609 -0.294 C10 X5F 6 X5F C13 C7 C 0 1 Y N N 25.229 9.776 14.919 3.775 0.693 0.920 C13 X5F 7 X5F C14 C8 C 0 1 Y N N 24.162 9.820 14.022 2.746 1.595 0.581 C14 X5F 8 X5F C15 C9 C 0 1 N N N 24.248 9.136 12.649 2.723 2.229 -0.749 C15 X5F 9 X5F C18 C10 C 0 1 Y N N 23.001 10.494 14.379 1.746 1.883 1.518 C18 X5F 10 X5F C20 C11 C 0 1 N N N 20.499 10.419 13.947 -0.318 3.069 2.180 C20 X5F 11 X5F C21 C12 C 0 1 N N N 20.318 9.180 14.827 -1.311 4.067 1.579 C21 X5F 12 X5F C23 C13 C 0 1 N N N 19.125 7.853 13.294 -2.945 4.311 -0.157 C23 X5F 13 X5F C24 C14 C 0 1 N N N 19.261 6.549 12.528 -3.607 3.560 -1.315 C24 X5F 14 X5F C26 C15 C 0 1 N N N 17.323 5.457 13.635 -5.055 1.626 -1.630 C26 X5F 15 X5F C27 C16 C 0 1 Y N N 16.817 4.272 14.412 -5.837 0.490 -1.098 C27 X5F 16 X5F C28 C17 C 0 1 Y N N 17.672 3.250 14.795 -5.885 0.254 0.277 C28 X5F 17 X5F C29 C18 C 0 1 Y N N 17.197 2.165 15.516 -6.616 -0.808 0.767 C29 X5F 18 X5F C30 C19 C 0 1 Y N N 15.861 2.117 15.800 -7.302 -1.639 -0.102 C30 X5F 19 X5F C35 C20 C 0 1 Y N N 15.011 3.123 15.411 -7.259 -1.411 -1.466 C35 X5F 20 X5F C36 C21 C 0 1 Y N N 15.480 4.213 14.705 -6.536 -0.349 -1.968 C36 X5F 21 X5F C38 C22 C 0 1 Y N N 22.910 11.120 15.615 1.778 1.278 2.772 C38 X5F 22 X5F C39 C23 C 0 1 Y N N 23.971 11.072 16.502 2.789 0.398 3.095 C39 X5F 23 X5F C40 C24 C 0 1 Y N N 25.131 10.405 16.151 3.782 0.099 2.176 C40 X5F 24 X5F N03 N1 N 0 1 N N N 27.779 9.649 15.091 5.818 -0.489 0.269 N03 X5F 25 X5F N06 N2 N 0 1 N N N 30.552 8.410 12.822 9.039 0.152 -1.414 N06 X5F 26 X5F N19 N3 N 0 1 N N N 21.872 10.553 13.463 0.727 2.770 1.198 N19 X5F 27 X5F N25 N4 N 0 1 N N N 18.696 5.443 13.289 -4.382 2.434 -0.788 N25 X5F 28 X5F N32 N5 N 0 1 N N N 15.805 -0.607 15.961 -9.766 -2.440 0.825 N32 X5F 29 X5F O01 O1 O 0 1 N N N 26.559 8.063 13.950 4.828 0.896 -1.157 O01 X5F 30 X5F O07 O2 O 0 1 N N N 29.392 10.387 12.914 7.865 1.148 0.183 O07 X5F 31 X5F O11 O3 O 0 1 N N N 28.858 9.852 18.833 6.193 -5.705 -0.411 O11 X5F 32 X5F O12 O4 O 0 1 N N N 27.522 8.319 18.032 8.111 -4.712 0.057 O12 X5F 33 X5F O16 O5 O 0 1 N N N 24.789 9.734 11.681 3.290 3.288 -0.927 O16 X5F 34 X5F O17 O6 O 0 1 N N N 23.778 7.980 12.475 2.072 1.633 -1.768 O17 X5F 35 X5F O22 O7 O 0 1 N N N 20.300 8.026 14.026 -1.990 3.459 0.478 O22 X5F 36 X5F O33 O8 O 0 1 N N N 15.761 0.872 18.066 -8.342 -3.936 -0.525 O33 X5F 37 X5F O34 O9 O 0 1 N N N 13.810 0.806 16.614 -7.672 -3.308 1.799 O34 X5F 38 X5F O37 O10 O 0 1 N N N 16.603 6.368 13.362 -5.020 1.832 -2.828 O37 X5F 39 X5F S31 S1 S 0 1 N N N 15.222 0.724 16.699 -8.233 -2.993 0.533 S31 X5F 40 X5F H041 H1 H 0 0 N N N 28.903 7.964 14.814 6.452 -0.804 -1.706 H041 X5F 41 X5F H082 H2 H 0 0 N N N 31.080 9.072 15.637 8.299 -2.377 -1.053 H082 X5F 42 X5F H081 H3 H 0 0 N N N 29.976 10.302 16.341 7.797 -2.207 0.646 H081 X5F 43 X5F H091 H4 H 0 0 N N N 29.479 7.345 16.790 5.541 -3.055 0.064 H091 X5F 44 X5F H092 H5 H 0 0 N N N 30.691 8.230 17.777 6.043 -3.225 -1.635 H092 X5F 45 X5F H201 H6 H 0 0 N N N 20.241 11.312 14.535 0.135 3.500 3.072 H201 X5F 46 X5F H202 H7 H 0 0 N N N 19.824 10.342 13.082 -0.842 2.151 2.445 H202 X5F 47 X5F H212 H8 H 0 0 N N N 21.151 9.115 15.542 -2.038 4.358 2.338 H212 X5F 48 X5F H211 H9 H 0 0 N N N 19.368 9.258 15.377 -0.775 4.950 1.233 H211 X5F 49 X5F H231 H10 H 0 0 N N N 18.991 8.690 12.593 -2.443 5.199 -0.540 H231 X5F 50 X5F H232 H11 H 0 0 N N N 18.262 7.803 13.974 -3.706 4.607 0.566 H232 X5F 51 X5F H241 H12 H 0 0 N N N 20.326 6.350 12.340 -4.270 4.236 -1.854 H241 X5F 52 X5F H242 H13 H 0 0 N N N 18.729 6.636 11.569 -2.839 3.187 -1.992 H242 X5F 53 X5F H281 H14 H 0 0 N N N 18.718 3.299 14.529 -5.350 0.902 0.956 H281 X5F 54 X5F H291 H15 H 0 0 N N N 17.863 1.381 15.844 -6.653 -0.991 1.830 H291 X5F 55 X5F H351 H16 H 0 0 N N N 13.962 3.061 15.661 -7.796 -2.063 -2.138 H351 X5F 56 X5F H361 H17 H 0 0 N N N 14.810 5.000 14.392 -6.507 -0.169 -3.033 H361 X5F 57 X5F H381 H18 H 0 0 N N N 22.007 11.647 15.885 1.007 1.500 3.495 H381 X5F 58 X5F H391 H19 H 0 0 N N N 23.894 11.554 17.465 2.804 -0.065 4.070 H391 X5F 59 X5F H401 H20 H 0 0 N N N 25.963 10.374 16.839 4.566 -0.596 2.439 H401 X5F 60 X5F H031 H21 H 0 0 N N N 27.732 10.490 15.629 5.825 -0.906 1.145 H031 X5F 61 X5F H061 H22 H 0 0 N N N 30.935 8.607 11.920 9.116 -0.577 -2.049 H061 X5F 62 X5F H062 H23 H 0 0 N N N 30.779 7.553 13.285 9.740 0.821 -1.357 H062 X5F 63 X5F H191 H24 H 0 0 N N N 22.010 9.822 12.795 0.706 3.190 0.324 H191 X5F 64 X5F H251 H25 H 0 0 N N N 19.276 4.677 13.566 -4.410 2.270 0.168 H251 X5F 65 X5F H1 H26 H 0 1 N N N 15.472 -1.423 16.433 -10.522 -3.044 0.754 H1 X5F 66 X5F H322 H27 H 0 0 N N N 15.497 -0.623 15.010 -9.909 -1.512 1.067 H322 X5F 67 X5F H2 H28 H 0 1 N N N 28.060 10.055 19.307 6.607 -6.554 -0.204 H2 X5F 68 X5F H3 H29 H 0 1 N N N 23.913 7.715 11.573 2.085 2.087 -2.622 H3 X5F 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5F O16 C15 DOUB N N 1 X5F O17 C15 SING N N 2 X5F C24 N25 SING N N 3 X5F C24 C23 SING N N 4 X5F C15 C14 SING N N 5 X5F N06 C05 SING N N 6 X5F O07 C05 DOUB N N 7 X5F N25 C26 SING N N 8 X5F C23 O22 SING N N 9 X5F O37 C26 DOUB N N 10 X5F C05 C04 SING N N 11 X5F N19 C20 SING N N 12 X5F N19 C18 SING N N 13 X5F C26 C27 SING N N 14 X5F C20 C21 SING N N 15 X5F O01 C02 DOUB N N 16 X5F C14 C18 DOUB Y N 17 X5F C14 C13 SING Y N 18 X5F O22 C21 SING N N 19 X5F C18 C38 SING Y N 20 X5F C27 C36 DOUB Y N 21 X5F C27 C28 SING Y N 22 X5F C02 C13 SING N N 23 X5F C02 N03 SING N N 24 X5F C36 C35 SING Y N 25 X5F C28 C29 DOUB Y N 26 X5F C04 N03 SING N N 27 X5F C04 C08 SING N N 28 X5F C13 C40 DOUB Y N 29 X5F C35 C30 DOUB Y N 30 X5F C29 C30 SING Y N 31 X5F C38 C39 DOUB Y N 32 X5F C30 S31 SING N N 33 X5F N32 S31 SING N N 34 X5F C08 C09 SING N N 35 X5F C40 C39 SING Y N 36 X5F O34 S31 DOUB N N 37 X5F S31 O33 DOUB N N 38 X5F C09 C10 SING N N 39 X5F O12 C10 DOUB N N 40 X5F C10 O11 SING N N 41 X5F C04 H041 SING N N 42 X5F C08 H082 SING N N 43 X5F C08 H081 SING N N 44 X5F C09 H091 SING N N 45 X5F C09 H092 SING N N 46 X5F C20 H201 SING N N 47 X5F C20 H202 SING N N 48 X5F C21 H212 SING N N 49 X5F C21 H211 SING N N 50 X5F C23 H231 SING N N 51 X5F C23 H232 SING N N 52 X5F C24 H241 SING N N 53 X5F C24 H242 SING N N 54 X5F C28 H281 SING N N 55 X5F C29 H291 SING N N 56 X5F C35 H351 SING N N 57 X5F C36 H361 SING N N 58 X5F C38 H381 SING N N 59 X5F C39 H391 SING N N 60 X5F C40 H401 SING N N 61 X5F N03 H031 SING N N 62 X5F N06 H061 SING N N 63 X5F N06 H062 SING N N 64 X5F N19 H191 SING N N 65 X5F N25 H251 SING N N 66 X5F N32 H1 SING N N 67 X5F N32 H322 SING N N 68 X5F O11 H2 SING N N 69 X5F O17 H3 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5F SMILES ACDLabs 12.01 "O=S(N)(=O)c1ccc(cc1)C(=O)NCCOCCNc1cccc(C(=O)NC(CCC(=O)O)C(N)=O)c1C(=O)O" X5F InChI InChI 1.06 "InChI=1S/C24H29N5O10S/c25-21(32)18(8-9-19(30)31)29-23(34)16-2-1-3-17(20(16)24(35)36)27-10-12-39-13-11-28-22(33)14-4-6-15(7-5-14)40(26,37)38/h1-7,18,27H,8-13H2,(H2,25,32)(H,28,33)(H,29,34)(H,30,31)(H,35,36)(H2,26,37,38)/t18-/m1/s1" X5F InChIKey InChI 1.06 BGBYSJKQYBBRTL-GOSISDBHSA-N X5F SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H](CCC(O)=O)NC(=O)c1cccc(NCCOCCNC(=O)c2ccc(cc2)[S](N)(=O)=O)c1C(O)=O" X5F SMILES CACTVS 3.385 "NC(=O)[CH](CCC(O)=O)NC(=O)c1cccc(NCCOCCNC(=O)c2ccc(cc2)[S](N)(=O)=O)c1C(O)=O" X5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)NCCOCCNC(=O)c2ccc(cc2)S(=O)(=O)N)C(=O)O)C(=O)N[C@H](CCC(=O)O)C(=O)N" X5F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)NCCOCCNC(=O)c2ccc(cc2)S(=O)(=O)N)C(=O)O)C(=O)NC(CCC(=O)O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X5F "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2R)-1-amino-4-carboxy-1-oxobutan-2-yl]carbamoyl}-6-({2-[2-(4-sulfamoylbenzamido)ethoxy]ethyl}amino)benzoic acid (non-preferred name)" X5F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(2~{R})-1-azanyl-5-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]carbamoyl]-6-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethylamino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5F "Create component" 2022-10-28 RCSB X5F "Initial release" 2023-02-22 RCSB #