data_X5H # _chem_comp.id X5H _chem_comp.name "(~{E})-6-(2-hydroxy-2-oxoethylamino)hex-4-enoic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-31 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 187.193 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MZL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5H C1 C1 C 0 1 N N N N N N 29.776 -7.613 19.055 -1.117 1.153 0.396 C1 X5H 1 X5H C2 C2 C 0 1 N N N N N N 29.445 -8.956 19.628 -2.487 0.882 -0.171 C2 X5H 2 X5H C3 C3 C 0 1 N N N N N N 29.290 -8.908 21.076 -3.133 -0.278 0.588 C3 X5H 3 X5H C4 C4 C 0 1 N N N N N N 28.316 -7.833 21.412 -4.503 -0.549 0.022 C4 X5H 4 X5H C11 C11 C 0 1 N N N N N N 28.963 -7.025 18.179 -0.071 1.156 -0.393 C11 X5H 5 X5H O2 O2 O 0 1 N N N N N N 27.071 -7.978 21.114 -4.919 0.118 -0.896 O2 X5H 6 X5H N N N 0 1 N N N Y Y N 28.148 -4.815 17.676 2.203 0.325 -0.182 N X5H 7 X5H CA CA C 0 1 N N N Y N N 27.321 -5.252 16.566 3.551 0.555 0.355 CA X5H 8 X5H C C C 0 1 N N N Y N Y 25.837 -5.124 16.853 4.447 -0.594 -0.030 C X5H 9 X5H O O O 0 1 N N N Y N Y 25.046 -4.750 15.972 4.009 -1.510 -0.684 O X5H 10 X5H C31 C31 C 0 1 N N N N N N 29.310 -5.693 17.616 1.299 1.427 0.174 C31 X5H 11 X5H OXT O1 O 0 1 N Y N Y N Y 25.448 -5.433 18.087 5.733 -0.599 0.354 O1 X5H 12 X5H O3 O3 O 0 1 N Y N N N N 28.730 -6.625 21.971 -5.260 -1.531 0.536 O3 X5H 13 X5H H1 H1 H 0 1 N N N N N N 30.686 -7.115 19.356 -0.998 1.348 1.451 H1 X5H 14 X5H H7 H2 H 0 1 N N N N N N 28.504 -9.311 19.182 -3.105 1.773 -0.068 H2 X5H 15 X5H H3 H3 H 0 1 N N N N N N 30.256 -9.657 19.381 -2.399 0.622 -1.226 H3 X5H 16 X5H H4 H4 H 0 1 N N N N N N 28.915 -9.876 21.441 -2.514 -1.170 0.484 H4 X5H 17 X5H H5 H5 H 0 1 N N N N N N 30.260 -8.690 21.546 -3.221 -0.018 1.643 H5 X5H 18 X5H H6 H6 H 0 1 N N N N N N 28.050 -7.517 17.877 -0.190 0.966 -1.449 H6 X5H 19 X5H H H7 H 0 1 N Y N Y Y N 28.419 -3.859 17.563 2.230 0.188 -1.182 H7 X5H 20 X5H HA2 H9 H 0 1 N N N Y N N 27.548 -6.307 16.352 3.952 1.482 -0.055 H9 X5H 21 X5H HA3 H10 H 0 1 N N N Y N N 27.563 -4.639 15.685 3.501 0.629 1.441 H10 X5H 22 X5H H11 H11 H 0 1 N N N N N N 29.626 -5.810 16.569 1.684 2.360 -0.237 H11 X5H 23 X5H H12 H12 H 0 1 N N N N N N 30.132 -5.252 18.200 1.234 1.507 1.259 H12 X5H 24 X5H HXT H13 H 0 1 N Y N Y N Y 24.508 -5.320 18.161 6.269 -1.357 0.084 H13 X5H 25 X5H H14 H14 H 0 1 N Y N N N N 27.984 -6.043 22.058 -6.131 -1.667 0.139 H14 X5H 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5H O C DOUB N N 1 X5H CA C SING N N 2 X5H CA N SING N N 3 X5H C31 N SING N N 4 X5H C31 C11 SING N N 5 X5H C11 C1 DOUB N E 6 X5H C1 C2 SING N N 7 X5H C2 C3 SING N N 8 X5H C3 C4 SING N N 9 X5H O2 C4 DOUB N N 10 X5H C OXT SING N N 11 X5H C4 O3 SING N N 12 X5H C1 H1 SING N N 13 X5H C2 H7 SING N N 14 X5H C2 H3 SING N N 15 X5H C3 H4 SING N N 16 X5H C3 H5 SING N N 17 X5H C11 H6 SING N N 18 X5H N H SING N N 19 X5H CA HA2 SING N N 20 X5H CA HA3 SING N N 21 X5H C31 H11 SING N N 22 X5H C31 H12 SING N N 23 X5H OXT HXT SING N N 24 X5H O3 H14 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5H InChI InChI 1.06 "InChI=1S/C8H13NO4/c10-7(11)4-2-1-3-5-9-6-8(12)13/h1,3,9H,2,4-6H2,(H,10,11)(H,12,13)/b3-1+" X5H InChIKey InChI 1.06 NGHLUBBLFARTJA-HNQUOIGGSA-N X5H SMILES_CANONICAL CACTVS 3.385 "OC(=O)CC/C=C/CNCC(O)=O" X5H SMILES CACTVS 3.385 "OC(=O)CCC=CCNCC(O)=O" X5H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)/C=C/CNCC(=O)O" X5H SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)C=CCNCC(=O)O" # _pdbx_chem_comp_identifier.comp_id X5H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-6-(2-hydroxy-2-oxoethylamino)hex-4-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5H "Create component" 2023-05-31 RCSB X5H "Initial release" 2023-06-07 RCSB X5H "Modify backbone" 2023-11-03 PDBE #