data_X5I # _chem_comp.id X5I _chem_comp.name "(6M)-4-{[(2R)-azepan-2-yl]methyl}-6-[(4R)-imidazo[1,2-a]pyridin-3-yl]-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-23 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.440 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UOJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5I C10 C1 C 0 1 Y N N N N N -16.203 -31.271 -18.457 -0.595 1.487 0.373 C10 X5I 1 X5I C12 C2 C 0 1 N N N N N N -16.107 -32.247 -20.750 -2.335 0.060 1.427 C12 X5I 2 X5I C13 C3 C 0 1 N N R N N N -15.015 -31.418 -21.473 -2.626 -1.083 0.452 C13 X5I 3 X5I C14 C4 C 0 1 N N N N N N -14.132 -32.315 -22.360 -3.095 -2.239 1.209 C14 X5I 4 X5I C15 C5 C 0 1 N N N N N N -13.465 -31.661 -23.585 -3.356 -3.453 0.289 C15 X5I 5 X5I C16 C6 C 0 1 N N N N N N -14.429 -31.576 -24.791 -4.663 -3.247 -0.427 C16 X5I 6 X5I N19 N1 N 0 1 N N N N N N -15.606 -30.282 -22.197 -3.608 -0.617 -0.550 N19 X5I 7 X5I C02 C7 C 0 1 N N N N N N -18.124 -31.178 -19.910 -2.869 2.144 0.267 C02 X5I 8 X5I C03 C8 C 0 1 N N N N N N -18.879 -30.525 -18.761 -2.450 3.351 -0.537 C03 X5I 9 X5I C05 C9 C 0 1 Y N N N N N -16.832 -30.446 -17.528 -0.205 2.762 -0.039 C05 X5I 10 X5I C06 C10 C 0 1 Y N N N N N -16.225 -30.243 -16.320 1.128 3.008 -0.335 C06 X5I 11 X5I C07 C11 C 0 1 Y N N N N N -15.013 -30.863 -16.053 2.034 1.967 -0.211 C07 X5I 12 X5I C08 C12 C 0 1 Y N N N N N -14.449 -31.684 -17.011 1.580 0.715 0.205 C08 X5I 13 X5I C17 C13 C 0 1 N N N N N N -15.500 -30.470 -24.699 -4.498 -2.558 -1.798 C17 X5I 14 X5I C18 C14 C 0 1 N N N N N N -16.367 -30.551 -23.430 -3.480 -1.405 -1.751 C18 X5I 15 X5I C20 C15 C 0 1 Y N N N N N -13.147 -32.318 -16.830 2.537 -0.400 0.340 C20 X5I 16 X5I C21 C16 C 0 1 Y N N N N N -12.323 -32.199 -15.748 2.282 -1.633 0.872 C21 X5I 17 X5I C23 C17 C 0 1 Y N N N N N -11.210 -33.387 -17.142 4.366 -1.633 0.264 C23 X5I 18 X5I C24 C18 C 0 1 Y N N N N N -10.264 -34.165 -17.848 5.714 -1.922 -0.022 C24 X5I 19 X5I C25 C19 C 0 1 Y N N N N N -10.562 -34.579 -19.096 6.492 -0.969 -0.603 C25 X5I 20 X5I C26 C20 C 0 1 Y N N N N N -11.818 -34.245 -19.695 5.943 0.286 -0.909 C26 X5I 21 X5I C27 C21 C 0 1 Y N N N N N -12.719 -33.511 -19.027 4.646 0.546 -0.635 C27 X5I 22 X5I N09 N2 N 0 1 Y N N N N N -15.055 -31.848 -18.199 0.293 0.514 0.481 N09 X5I 23 X5I N11 N3 N 0 1 N N N N N N -16.811 -31.486 -19.695 -1.940 1.254 0.675 N11 X5I 24 X5I N22 N4 N 0 1 Y N N N N N -11.146 -32.861 -15.935 3.397 -2.355 0.815 N22 X5I 25 X5I N28 N5 N 0 1 Y N N N N N -12.428 -33.083 -17.749 3.857 -0.400 -0.052 N28 X5I 26 X5I O01 O1 O 0 1 N N N N N N -18.685 -31.389 -20.967 -4.037 1.973 0.545 O01 X5I 27 X5I O04 O2 O 0 1 N N N N N N -18.026 -29.834 -17.831 -1.133 3.749 -0.147 O04 X5I 28 X5I H1 H1 H 0 1 N N N N N N -16.846 -32.578 -21.495 -3.231 0.277 2.009 H1 X5I 29 X5I H2 H2 H 0 1 N N N N N N -15.632 -33.126 -20.290 -1.527 -0.231 2.098 H2 X5I 30 X5I H3 H3 H 0 1 N N N N N N -14.362 -31.007 -20.689 -1.701 -1.350 -0.060 H3 X5I 31 X5I H4 H4 H 0 1 N N N N N N -14.762 -33.139 -22.727 -2.342 -2.508 1.949 H4 X5I 32 X5I H5 H5 H 0 1 N N N N N N -13.331 -32.721 -21.725 -4.020 -1.976 1.722 H5 X5I 33 X5I H6 H6 H 0 1 N N N N N N -12.587 -32.258 -23.873 -2.550 -3.539 -0.439 H6 X5I 34 X5I H7 H7 H 0 1 N N N N N N -13.144 -30.644 -23.314 -3.405 -4.361 0.890 H7 X5I 35 X5I H8 H8 H 0 1 N N N N N N -14.945 -32.543 -24.883 -5.137 -4.217 -0.577 H8 X5I 36 X5I H9 H9 H 0 1 N N N N N N -13.829 -31.394 -25.694 -5.313 -2.635 0.198 H9 X5I 37 X5I H10 H10 H 0 1 N N N N N N -14.857 -29.666 -22.441 -3.485 0.365 -0.747 H10 X5I 38 X5I H12 H12 H 0 1 N N N N N N -19.594 -29.802 -19.181 -2.458 3.101 -1.598 H12 X5I 39 X5I H13 H13 H 0 1 N N N N N N -19.427 -31.307 -18.215 -3.146 4.169 -0.352 H13 X5I 40 X5I H14 H14 H 0 1 N N N N N N -16.685 -29.605 -15.580 1.452 3.987 -0.655 H14 X5I 41 X5I H15 H15 H 0 1 N N N N N N -14.516 -30.706 -15.107 3.079 2.123 -0.434 H15 X5I 42 X5I H16 H16 H 0 1 N N N N N N -14.993 -29.494 -24.711 -4.166 -3.296 -2.527 H16 X5I 43 X5I H17 H17 H 0 1 N N N N N N -16.159 -30.552 -25.576 -5.464 -2.162 -2.113 H17 X5I 44 X5I H18 H18 H 0 1 N N N N N N -17.177 -29.811 -23.511 -3.634 -0.761 -2.617 H18 X5I 45 X5I H19 H19 H 0 1 N N N N N N -16.798 -31.561 -23.363 -2.473 -1.820 -1.796 H19 X5I 46 X5I H20 H20 H 0 1 N N N N N N -12.573 -31.648 -14.853 1.335 -1.964 1.271 H20 X5I 47 X5I H21 H21 H 0 1 N N N N N N -9.318 -34.423 -17.395 6.126 -2.891 0.218 H21 X5I 48 X5I H22 H22 H 0 1 N N N N N N -9.846 -35.168 -19.649 7.528 -1.177 -0.828 H22 X5I 49 X5I H23 H23 H 0 1 N N N N N N -12.042 -34.587 -20.694 6.558 1.045 -1.370 H23 X5I 50 X5I H24 H24 H 0 1 N N N N N N -13.663 -33.257 -19.485 4.232 1.515 -0.874 H24 X5I 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5I C16 C17 SING N N 1 X5I C16 C15 SING N N 2 X5I C17 C18 SING N N 3 X5I C15 C14 SING N N 4 X5I C18 N19 SING N N 5 X5I C14 C13 SING N N 6 X5I N19 C13 SING N N 7 X5I C13 C12 SING N N 8 X5I O01 C02 DOUB N N 9 X5I C12 N11 SING N N 10 X5I C02 N11 SING N N 11 X5I C02 C03 SING N N 12 X5I N11 C10 SING N N 13 X5I C26 C25 SING Y N 14 X5I C26 C27 DOUB Y N 15 X5I C25 C24 DOUB Y N 16 X5I C27 N28 SING Y N 17 X5I C03 O04 SING N N 18 X5I C10 N09 DOUB Y N 19 X5I C10 C05 SING Y N 20 X5I N09 C08 SING Y N 21 X5I C24 C23 SING Y N 22 X5I O04 C05 SING N N 23 X5I N28 C23 SING Y N 24 X5I N28 C20 SING Y N 25 X5I C05 C06 DOUB Y N 26 X5I C23 N22 DOUB Y N 27 X5I C08 C20 SING N N 28 X5I C08 C07 DOUB Y N 29 X5I C20 C21 DOUB Y N 30 X5I C06 C07 SING Y N 31 X5I N22 C21 SING Y N 32 X5I C12 H1 SING N N 33 X5I C12 H2 SING N N 34 X5I C13 H3 SING N N 35 X5I C14 H4 SING N N 36 X5I C14 H5 SING N N 37 X5I C15 H6 SING N N 38 X5I C15 H7 SING N N 39 X5I C16 H8 SING N N 40 X5I C16 H9 SING N N 41 X5I N19 H10 SING N N 42 X5I C03 H12 SING N N 43 X5I C03 H13 SING N N 44 X5I C06 H14 SING N N 45 X5I C07 H15 SING N N 46 X5I C17 H16 SING N N 47 X5I C17 H17 SING N N 48 X5I C18 H18 SING N N 49 X5I C18 H19 SING N N 50 X5I C21 H20 SING N N 51 X5I C24 H21 SING N N 52 X5I C25 H22 SING N N 53 X5I C26 H23 SING N N 54 X5I C27 H24 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5I SMILES ACDLabs 12.01 "O=C1COc2ccc(nc2N1CC1CCCCCN1)c1cnc2ccccn21" X5I InChI InChI 1.06 "InChI=1S/C21H23N5O2/c27-20-14-28-18-9-8-16(17-12-23-19-7-3-5-11-25(17)19)24-21(18)26(20)13-15-6-2-1-4-10-22-15/h3,5,7-9,11-12,15,22H,1-2,4,6,10,13-14H2/t15-/m1/s1" X5I InChIKey InChI 1.06 YYCHTNBYNGXUNO-OAHLLOKOSA-N X5I SMILES_CANONICAL CACTVS 3.385 "O=C1COc2ccc(nc2N1C[C@H]3CCCCCN3)c4cnc5ccccn45" X5I SMILES CACTVS 3.385 "O=C1COc2ccc(nc2N1C[CH]3CCCCCN3)c4cnc5ccccn45" X5I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccn2c(c1)ncc2c3ccc4c(n3)N(C(=O)CO4)C[C@H]5CCCCCN5" X5I SMILES "OpenEye OEToolkits" 2.0.7 "c1ccn2c(c1)ncc2c3ccc4c(n3)N(C(=O)CO4)CC5CCCCCN5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X5I "SYSTEMATIC NAME" ACDLabs 12.01 "(6M)-4-{[(2R)-azepan-2-yl]methyl}-6-[(4R)-imidazo[1,2-a]pyridin-3-yl]-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one" X5I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(2~{R})-azepan-2-yl]methyl]-6-imidazo[1,2-a]pyridin-3-yl-pyrido[3,2-b][1,4]oxazin-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5I "Create component" 2023-10-23 RCSB X5I "Initial release" 2024-11-06 RCSB #