data_X5P # _chem_comp.id X5P _chem_comp.name "4-oxidanylidene-4-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid" _chem_comp.type "L-peptide NH3 amino terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H11 N O5" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-31 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 189.166 _chem_comp.one_letter_code A _chem_comp.three_letter_code X5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KQE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5P N N N 0 1 N N N Y Y N 0.504 -1.713 -2.111 1.039 0.223 -0.223 N X5P 1 X5P CA CA C 0 1 N N S Y N N -0.650 -2.067 -2.938 2.296 -0.486 0.033 CA X5P 2 X5P C C C 0 1 N N N Y N Y -1.347 -3.298 -2.376 3.411 0.513 0.205 C X5P 3 X5P O O O 0 1 N N N Y N Y -1.547 -4.290 -3.075 3.180 1.696 0.122 O X5P 4 X5P CB CB C 0 1 N N N N N N -0.218 -2.311 -4.376 2.612 -1.406 -1.148 CB X5P 5 X5P C1 C1 C 0 1 N N N N N N 3.597 1.430 0.063 -3.898 0.228 -0.002 C1 X5P 6 X5P O1 O1 O 0 1 N N N N N N 4.321 0.607 0.622 -3.879 1.337 -0.482 O1 X5P 7 X5P C2 C2 C 0 1 N N N N N N 2.742 1.049 -1.165 -2.607 -0.504 0.256 C2 X5P 8 X5P C3 C3 C 0 1 N N N N N N 2.040 -0.296 -0.891 -1.429 0.373 -0.176 C3 X5P 9 X5P C4 C4 C 0 1 N N N N N N 0.783 -0.443 -1.783 -0.137 -0.359 0.082 C4 X5P 10 X5P O3 O3 O 0 1 N N N N N N 0.113 0.531 -2.133 -0.156 -1.472 0.563 O3 X5P 11 X5P OXT O2 O 0 1 N Y N Y N Y -1.713 -3.220 -1.101 4.660 0.089 0.450 O2 X5P 12 X5P O4 O4 O 0 1 N Y N N N N 3.474 2.712 0.438 -5.070 -0.352 0.301 O4 X5P 13 X5P H H H 0 1 N N N Y Y N 1.104 -2.441 -1.780 1.055 1.113 -0.608 H X5P 14 X5P HA HA H 0 1 N N N Y N N -1.366 -1.232 -2.930 2.198 -1.081 0.941 HA X5P 15 X5P HB2 HB2 H 0 1 N N N N N N 0.283 -1.413 -4.766 2.710 -0.810 -2.056 HB2 X5P 16 X5P HB1 HB1 H 0 1 N N N N N N 0.477 -3.163 -4.410 3.547 -1.933 -0.957 HB1 X5P 17 X5P HB3 HB3 H 0 1 N N N N N N -1.102 -2.534 -4.991 1.806 -2.128 -1.272 HB3 X5P 18 X5P H21 H21 H 0 1 N N N N N N 3.389 0.954 -2.049 -2.522 -0.728 1.319 H21 X5P 19 X5P H22 H22 H 0 1 N N N N N N 1.987 1.829 -1.345 -2.596 -1.433 -0.314 H22 X5P 20 X5P H31 H31 H 0 1 N N N N N N 1.741 -0.339 0.167 -1.514 0.597 -1.239 H31 X5P 21 X5P H32 H32 H 0 1 N N N N N N 2.737 -1.119 -1.109 -1.440 1.302 0.393 H32 X5P 22 X5P HXT H1 H 0 1 N Y N Y N Y -2.136 -4.030 -0.842 5.342 0.767 0.553 H1 X5P 23 X5P H4 H2 H 0 1 N Y N N N N 4.028 2.876 1.192 -5.872 0.157 0.118 H2 X5P 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5P CB CA SING N N 1 X5P O C DOUB N N 2 X5P CA C SING N N 3 X5P CA N SING N N 4 X5P O3 C4 DOUB N N 5 X5P N C4 SING N N 6 X5P C4 C3 SING N N 7 X5P C2 C3 SING N N 8 X5P C2 C1 SING N N 9 X5P C1 O1 DOUB N N 10 X5P C OXT SING N N 11 X5P C1 O4 SING N N 12 X5P N H SING N N 13 X5P CA HA SING N N 14 X5P CB HB2 SING N N 15 X5P CB HB1 SING N N 16 X5P CB HB3 SING N N 17 X5P C2 H21 SING N N 18 X5P C2 H22 SING N N 19 X5P C3 H31 SING N N 20 X5P C3 H32 SING N N 21 X5P OXT HXT SING N N 22 X5P O4 H4 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5P InChI InChI 1.06 "InChI=1S/C7H11NO5/c1-4(7(12)13)8-5(9)2-3-6(10)11/h4H,2-3H2,1H3,(H,8,9)(H,10,11)(H,12,13)/t4-/m0/s1" X5P InChIKey InChI 1.06 KAOMVEQNJVSESC-BYPYZUCNSA-N X5P SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)CCC(O)=O)C(O)=O" X5P SMILES CACTVS 3.385 "C[CH](NC(=O)CCC(O)=O)C(O)=O" X5P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)NC(=O)CCC(=O)O" X5P SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NC(=O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id X5P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-oxidanylidene-4-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5P "Create component" 2023-05-31 RCSB X5P "Initial release" 2023-06-14 RCSB X5P "Modify backbone" 2023-11-03 PDBE #