data_X5U # _chem_comp.id X5U _chem_comp.name "(S)-alpha-methyl-4-Iodophenylalanine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H12 I N O2" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms "(2S)-2-azanyl-3-(4-iodophenyl)-2-methyl-propanoic acid; 4-Iodo-alpha-methyl-L-phenylalanine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-23 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.112 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QWJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5U CE2 C1 C 0 1 Y N N N N N 14.994 21.069 -4.289 0.703 1.267 0.065 CE2 X5U 1 X5U CZ C2 C 0 1 Y N N N N N 14.666 21.101 -5.631 1.367 0.090 -0.229 CZ X5U 2 X5U CE1 C3 C 0 1 Y N N N N N 13.889 22.122 -6.139 0.672 -0.982 -0.760 CE1 X5U 3 X5U CD1 C4 C 0 1 Y N N N N N 13.434 23.111 -5.284 -0.686 -0.876 -0.996 CD1 X5U 4 X5U CG C5 C 0 1 Y N N N N N 13.739 23.098 -3.931 -1.349 0.301 -0.702 CG X5U 5 X5U CD2 C6 C 0 1 Y N N N N N 14.534 22.070 -3.450 -0.655 1.372 -0.172 CD2 X5U 6 X5U N N1 N 0 1 N N N Y Y N 11.608 25.264 -1.579 -3.176 -1.384 0.664 N X5U 7 X5U CA C7 C 0 1 N N S Y N N 11.928 23.977 -2.263 -3.601 -0.031 0.284 CA X5U 8 X5U C C8 C 0 1 N N N Y N Y 12.032 22.896 -1.163 -5.078 -0.033 -0.014 C X5U 9 X5U O O1 O 0 1 N N N Y N Y 13.037 22.924 -0.423 -5.519 0.680 -0.884 O X5U 10 X5U C1 C9 C 0 1 N N N N N N 10.840 23.609 -3.271 -3.314 0.936 1.435 C1 X5U 11 X5U CB C10 C 0 1 N N N N N N 13.265 24.203 -3.015 -2.830 0.415 -0.960 CB X5U 12 X5U I1 I1 I 0 1 N N N N N N 15.364 19.598 -6.921 3.425 -0.069 0.128 I1 X5U 13 X5U HE2 H1 H 0 1 N N N N N N 15.605 20.269 -3.897 1.244 2.102 0.483 HE2 X5U 14 X5U HE1 H2 H 0 1 N N N N N N 13.639 22.149 -7.189 1.190 -1.901 -0.990 HE1 X5U 15 X5U HD1 H3 H 0 1 N N N N N N 12.827 23.912 -5.680 -1.229 -1.713 -1.411 HD1 X5U 16 X5U HD2 H4 H 0 1 N N N N N N 14.799 22.049 -2.403 -1.175 2.289 0.062 HD2 X5U 17 X5U H2 H5 H 0 1 N Y N Y Y N 12.332 25.484 -0.926 -3.623 -1.677 1.520 H2 X5U 18 X5U H H6 H 0 1 N N N Y Y N 11.539 25.994 -2.259 -3.354 -2.042 -0.080 H X5U 19 X5U H3 H9 H 0 1 N N N N N N 11.099 22.659 -3.760 -2.246 0.938 1.651 H3 X5U 20 X5U H1 H10 H 0 1 N N N N N N 9.878 23.502 -2.749 -3.629 1.941 1.153 H1 X5U 21 X5U HB1 H11 H 0 1 N N N N N N 10.760 24.402 -4.029 -3.863 0.618 2.322 HB1 X5U 22 X5U HB2 H12 H 0 1 N N N N N N 13.152 25.112 -3.624 -3.079 1.451 -1.190 HB2 X5U 23 X5U HB3 H13 H 0 1 N N N N N N 14.047 24.363 -2.258 -3.102 -0.220 -1.803 HB3 X5U 24 X5U OXT O3 O 0 1 N Y N Y N Y 11.034 22.030 -1.026 -5.903 -0.826 0.687 OXT X5U 25 X5U HXT H14 H 0 1 N Y N Y N Y 11.212 21.455 -0.291 -6.842 -0.793 0.460 HXT X5U 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5U C1 CA SING N N 1 X5U CA N SING N N 2 X5U CA CB SING N N 3 X5U CB CG SING N N 4 X5U CG CD1 DOUB Y N 5 X5U CD1 CE1 SING Y N 6 X5U CE1 CZ DOUB Y N 7 X5U CZ I1 SING N N 8 X5U CZ CE2 SING Y N 9 X5U CE2 CD2 DOUB Y N 10 X5U CA C SING N N 11 X5U C O DOUB N N 12 X5U CG CD2 SING Y N 13 X5U CE2 HE2 SING N N 14 X5U CE1 HE1 SING N N 15 X5U CD1 HD1 SING N N 16 X5U CD2 HD2 SING N N 17 X5U N H2 SING N N 18 X5U N H SING N N 19 X5U C1 H3 SING N N 20 X5U C1 H1 SING N N 21 X5U C1 HB1 SING N N 22 X5U CB HB2 SING N N 23 X5U CB HB3 SING N N 24 X5U C OXT SING N N 25 X5U OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5U InChI InChI 1.06 "InChI=1S/C10H12INO2/c1-10(12,9(13)14)6-7-2-4-8(11)5-3-7/h2-5H,6,12H2,1H3,(H,13,14)/t10-/m0/s1" X5U InChIKey InChI 1.06 YNCJAZPOXKKAMD-JTQLQIEISA-N X5U SMILES_CANONICAL CACTVS 3.385 "C[C@](N)(Cc1ccc(I)cc1)C(O)=O" X5U SMILES CACTVS 3.385 "C[C](N)(Cc1ccc(I)cc1)C(O)=O" X5U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@](Cc1ccc(cc1)I)(C(=O)O)N" X5U SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cc1ccc(cc1)I)(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id X5U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-(4-iodophenyl)-2-methyl-propanoic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 X5U "(2S)-2-azanyl-3-(4-iodophenyl)-2-methyl-propanoic acid" PDB ? 2 X5U 4-Iodo-alpha-methyl-L-phenylalanine PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5U "Create component" 2023-10-23 PDBE X5U "Other modification" 2023-10-26 PDBE X5U "Modify backbone" 2023-11-03 PDBE X5U "Modify parent residue" 2024-01-22 PDBE X5U "Modify PCM" 2024-09-27 PDBE X5U "Initial release" 2024-12-04 RCSB # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 X5U PHE Methylation "Named protein modification" "Amino-acid backbone" "Any position" ? ? ? ? 2 X5U PHE Iodination "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? #