data_X5V # _chem_comp.id X5V _chem_comp.name "N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine" _chem_comp.type "L-peptide NH3 amino terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C17 H16 N2 O8" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-31 _chem_comp.pdbx_modified_date 2023-02-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.318 _chem_comp.one_letter_code T _chem_comp.three_letter_code X5V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8H98 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5V N1 N1 N 0 1 N N N 0.155 12.941 48.771 -1.439 -0.670 0.201 N1 X5V 1 X5V C1 C1 C 0 1 Y N N 2.152 14.412 44.144 -5.191 2.663 0.848 C1 X5V 2 X5V O1 O1 O 0 1 N N N 1.360 16.493 45.172 -6.851 1.933 -0.689 O1 X5V 3 X5V C2 C2 C 0 1 Y N N 2.342 13.030 44.261 -3.942 2.512 1.425 C2 X5V 4 X5V C3 C3 C 0 1 Y N N 1.976 12.337 45.424 -3.115 1.481 1.037 C3 X5V 5 X5V C4 C4 C 0 1 Y N N 1.417 13.041 46.501 -3.536 0.580 0.054 C4 X5V 6 X5V C5 C5 C 0 1 N N N 0.996 12.272 47.770 -2.654 -0.526 -0.364 C5 X5V 7 X5V C6 C6 C 0 1 Y N N 1.583 15.103 45.222 -5.623 1.779 -0.127 C6 X5V 8 X5V C7 C7 C 0 1 N N N -1.762 12.776 50.224 -0.907 -3.009 0.567 C7 X5V 9 X5V C8 C8 C 0 1 N N R 0.363 12.874 51.172 0.895 -1.386 0.050 C8 X5V 10 X5V C9 C9 C 0 1 N N N 1.477 11.888 51.549 1.209 -0.060 -0.644 C9 X5V 11 X5V C10 C10 C 0 1 Y N N 2.662 12.452 52.374 2.674 0.255 -0.487 C10 X5V 12 X5V C11 C11 C 0 1 Y N N 3.469 11.495 53.030 3.111 0.982 0.604 C11 X5V 13 X5V C12 C12 C 0 1 Y N N 4.555 11.916 53.785 4.456 1.271 0.749 C12 X5V 14 X5V C13 C13 C 0 1 Y N N 4.846 13.295 53.885 5.362 0.833 -0.198 C13 X5V 15 X5V C14 C14 C 0 1 Y N N 4.054 14.255 53.227 4.925 0.105 -1.289 C14 X5V 16 X5V C15 C15 C 0 1 Y N N 2.957 13.829 52.482 3.581 -0.188 -1.431 C15 X5V 17 X5V C16 C16 C 0 1 Y N N 1.217 14.432 46.385 -4.799 0.732 -0.530 C16 X5V 18 X5V O2 O2 O 0 1 N N N -2.192 13.649 49.588 -1.793 -2.979 1.388 O2 X5V 19 X5V C61 C17 C 0 1 N N S -0.338 12.300 50.004 -0.563 -1.768 -0.215 C61 X5V 20 X5V N11 N2 N 0 1 N N N 6.013 13.717 54.672 6.801 1.143 -0.044 N11 X5V 21 X5V O3 O3 O 0 1 N N N 6.057 15.073 55.054 7.600 0.756 -0.878 O3 X5V 22 X5V O4 O4 O 0 1 N N N 7.056 12.775 54.988 7.187 1.784 0.917 O4 X5V 23 X5V O5 O5 O 0 1 N N N 0.884 14.109 50.747 1.103 -1.249 1.457 O5 X5V 24 X5V O6 O6 O 0 1 N N N 1.322 11.131 47.908 -3.023 -1.308 -1.219 O6 X5V 25 X5V O7 O7 O 0 1 N N N 0.655 15.207 47.427 -5.218 -0.137 -1.485 O7 X5V 26 X5V H1 H1 H 0 1 N N N -0.100 13.894 48.606 -1.143 -0.044 0.880 H1 X5V 27 X5V H2 H2 H 0 1 N N N 2.438 14.934 43.243 -5.834 3.472 1.162 H2 X5V 28 X5V H3 H3 H 0 1 N N N 0.970 16.781 45.989 -6.856 2.494 -1.476 H3 X5V 29 X5V H4 H4 H 0 1 N N N 2.780 12.486 43.438 -3.613 3.207 2.184 H4 X5V 30 X5V H5 H5 H 0 1 N N N 2.123 11.269 45.490 -2.141 1.368 1.491 H5 X5V 31 X5V H7 H7 H 0 1 N N N -0.330 12.995 52.018 1.551 -2.164 -0.340 H7 X5V 32 X5V H8 H8 H 0 1 N N N 1.019 11.078 52.136 0.965 -0.137 -1.704 H8 X5V 33 X5V H9 H9 H 0 1 N N N 1.888 11.477 50.615 0.616 0.736 -0.193 H9 X5V 34 X5V H10 H10 H 0 1 N N N 3.242 10.443 52.944 2.403 1.325 1.344 H10 X5V 35 X5V H11 H11 H 0 1 N N N 5.175 11.193 54.294 4.797 1.840 1.601 H11 X5V 36 X5V H12 H12 H 0 1 N N N 4.293 15.306 53.299 5.633 -0.237 -2.029 H12 X5V 37 X5V H13 H13 H 0 1 N N N 2.330 14.554 51.985 3.240 -0.759 -2.282 H13 X5V 38 X5V H14 H14 H 0 1 N N N -0.271 11.203 49.968 -0.701 -1.960 -1.279 H14 X5V 39 X5V H15 H15 H 0 1 N N N 1.348 14.522 51.466 0.551 -0.572 1.872 H15 X5V 40 X5V H16 H16 H 0 1 N N N 0.447 14.644 48.164 -4.989 0.128 -2.386 H16 X5V 41 X5V O8 O8 O 0 1 N Y N -2.482 12.143 51.268 -0.230 -4.148 0.353 O8 X5V 42 X5V H6 H6 H 0 1 N N N -3.340 12.543 51.350 -0.486 -4.918 0.879 H6 X5V 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5V C1 C2 DOUB Y N 1 X5V C1 C6 SING Y N 2 X5V C2 C3 SING Y N 3 X5V O1 C6 SING N N 4 X5V C6 C16 DOUB Y N 5 X5V C3 C4 DOUB Y N 6 X5V C16 C4 SING Y N 7 X5V C16 O7 SING N N 8 X5V C4 C5 SING N N 9 X5V C5 O6 DOUB N N 10 X5V C5 N1 SING N N 11 X5V N1 C61 SING N N 12 X5V O2 C7 DOUB N N 13 X5V C61 C7 SING N N 14 X5V C61 C8 SING N N 15 X5V O5 C8 SING N N 16 X5V C8 C9 SING N N 17 X5V C9 C10 SING N N 18 X5V C10 C15 DOUB Y N 19 X5V C10 C11 SING Y N 20 X5V C15 C14 SING Y N 21 X5V C11 C12 DOUB Y N 22 X5V C14 C13 DOUB Y N 23 X5V C12 C13 SING Y N 24 X5V C13 N11 SING N N 25 X5V N11 O4 DOUB N N 26 X5V N11 O3 DOUB N N 27 X5V N1 H1 SING N N 28 X5V C1 H2 SING N N 29 X5V O1 H3 SING N N 30 X5V C2 H4 SING N N 31 X5V C3 H5 SING N N 32 X5V C8 H7 SING N N 33 X5V C9 H8 SING N N 34 X5V C9 H9 SING N N 35 X5V C11 H10 SING N N 36 X5V C12 H11 SING N N 37 X5V C14 H12 SING N N 38 X5V C15 H13 SING N N 39 X5V C61 H14 SING N N 40 X5V O5 H15 SING N N 41 X5V O7 H16 SING N N 42 X5V C7 O8 SING N N 43 X5V O8 H6 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5V SMILES ACDLabs 12.01 "Oc1c(cccc1O)C(=O)NC(C(=O)O)C(O)Cc1ccc(cc1)N(=O)=O" X5V InChI InChI 1.06 "InChI=1S/C17H16N2O8/c20-12-3-1-2-11(15(12)22)16(23)18-14(17(24)25)13(21)8-9-4-6-10(7-5-9)19(26)27/h1-7,13-14,20-22H,8H2,(H,18,23)(H,24,25)/t13-,14+/m1/s1" X5V InChIKey InChI 1.06 IKEPVTXZQSIGBO-KGLIPLIRSA-N X5V SMILES_CANONICAL CACTVS 3.385 "O[C@H](Cc1ccc(cc1)[N](=O)=O)[C@H](NC(=O)c2cccc(O)c2O)C(O)=O" X5V SMILES CACTVS 3.385 "O[CH](Cc1ccc(cc1)[N](=O)=O)[CH](NC(=O)c2cccc(O)c2O)C(O)=O" X5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)O)O)C(=O)N[C@@H]([C@@H](Cc2ccc(cc2)N(=O)=O)O)C(=O)O" X5V SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)O)O)C(=O)NC(C(Cc2ccc(cc2)N(=O)=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X5V "SYSTEMATIC NAME" ACDLabs 12.01 "N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine" X5V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-4-(4-nitrophenyl)-3-oxidanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5V "Create component" 2022-10-31 RCSB X5V "Initial release" 2023-02-08 RCSB #