data_X5X # _chem_comp.id X5X _chem_comp.name "(2R,4S)-2-[(1R)-2-[[(5S)-5-acetamido-6-oxidanyl-6-oxidanylidene-hexyl]amino]-2-oxidanylidene-1-(2-phenylethanoylamino)ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 N4 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms PenG-Lys _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-23 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.614 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QXC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5X C4 C1 C 0 1 N N N N N N -57.033 -6.841 -20.921 5.692 0.182 0.979 C4 X5X 1 X5X C14 C2 C 0 1 Y N N N N N -49.346 -4.774 -29.576 -7.711 3.339 1.314 C14 X5X 2 X5X C5 C3 C 0 1 N N N N N N -57.203 -6.348 -22.365 4.627 0.942 0.186 C5 X5X 3 X5X C6 C4 C 0 1 N N N N N N -57.159 -4.842 -22.622 3.238 0.439 0.585 C6 X5X 4 X5X C11 C5 C 0 1 N N N N N N -53.085 -4.132 -29.627 -4.941 2.349 -1.052 C11 X5X 5 X5X C7 C6 C 0 1 N N N N N N -57.346 -4.509 -24.094 2.173 1.199 -0.207 C7 X5X 6 X5X C8 C7 C 0 1 N N N N N N -55.421 -4.431 -25.594 -0.256 1.247 -0.399 C8 X5X 7 X5X C9 C8 C 0 1 N N R N N N -54.282 -5.221 -26.238 -1.624 0.751 -0.006 C9 X5X 8 X5X C10 C9 C 0 1 N N N N N N -53.428 -5.030 -28.453 -3.892 1.600 -0.272 C10 X5X 9 X5X C12 C10 C 0 1 Y N N N N N -51.596 -3.925 -29.752 -6.240 2.338 -0.287 C12 X5X 10 X5X C13 C11 C 0 1 Y N N N N N -50.712 -4.963 -29.474 -6.520 3.349 0.613 C13 X5X 11 X5X N1 N1 N 0 1 N N N N N N -59.238 -5.724 -20.599 7.334 0.356 -0.825 N1 X5X 12 X5X N2 N2 N 0 1 N N N N N N -56.324 -5.142 -24.913 0.843 0.717 0.175 N2 X5X 13 X5X C3 C12 C 0 1 N N S N N N -58.271 -6.644 -20.030 7.080 0.685 0.580 C3 X5X 14 X5X N3 N3 N 0 1 N N N N N N -53.664 -4.421 -27.287 -2.644 1.479 -0.765 N3 X5X 15 X5X C1 C13 C 0 1 N N N N N N -61.270 -5.029 -21.703 8.469 0.750 -2.987 C1 X5X 16 X5X C15 C14 C 0 1 Y N N N N N -48.850 -3.543 -29.952 -8.622 2.319 1.115 C15 X5X 17 X5X C16 C15 C 0 1 Y N N N N N -49.713 -2.502 -30.225 -8.344 1.311 0.211 C16 X5X 18 X5X C17 C16 C 0 1 Y N N N N N -51.081 -2.690 -30.125 -7.156 1.324 -0.495 C17 X5X 19 X5X C18 C17 C 0 1 N N R N N N -53.367 -6.013 -25.258 -1.732 -0.744 -0.311 C18 X5X 20 X5X C19 C18 C 0 1 N N S N N N -51.933 -6.098 -23.286 -3.111 -2.705 0.114 C19 X5X 21 X5X C2 C19 C 0 1 N N N N N N -60.410 -6.118 -21.087 8.209 1.089 -1.542 C2 X5X 22 X5X C20 C20 C 0 1 N N N N N N -52.328 -6.819 -21.987 -3.299 -3.345 -1.237 C20 X5X 23 X5X C21 C21 C 0 1 N N N N N N -51.171 -7.055 -24.270 -1.809 -3.240 0.741 C21 X5X 24 X5X C22 C22 C 0 1 N N N N N N -51.655 -8.490 -24.262 -1.149 -4.266 -0.182 C22 X5X 25 X5X C23 C23 C 0 1 N N N N N N -49.667 -7.022 -24.093 -2.085 -3.853 2.115 C23 X5X 26 X5X C24 C24 C 0 1 N N N N N N -57.768 -6.067 -18.699 8.122 0.025 1.446 C24 X5X 27 X5X N4 N4 N 0 1 N N N N N N -53.107 -5.470 -23.912 -3.109 -1.248 -0.048 N4 X5X 28 X5X O1 O1 O 0 1 N N N N N N -60.778 -7.306 -21.044 8.786 2.022 -1.024 O1 X5X 29 X5X O2 O2 O 0 1 N N N N N N -55.438 -3.197 -25.663 -0.144 2.122 -1.231 O2 X5X 30 X5X O3 O3 O 0 1 N N N N N N -53.547 -6.254 -28.599 -4.171 1.106 0.800 O3 X5X 31 X5X O4 O4 O 0 1 N N N N N N -51.469 -6.900 -21.079 -3.001 -2.738 -2.239 O4 X5X 32 X5X O5 O5 O 0 1 N N N N N N -53.487 -7.290 -21.937 -3.795 -4.588 -1.329 O5 X5X 33 X5X O6 O6 O 0 1 N N N N N N -57.991 -6.686 -17.630 8.987 -0.650 0.942 O6 X5X 34 X5X O7 O7 O 0 1 N N N N N N -57.144 -4.987 -18.804 8.088 0.189 2.778 O7 X5X 35 X5X S1 S1 S 0 1 N N N N N N -51.671 -6.300 -25.823 -0.761 -1.740 0.896 S1 X5X 36 X5X H7 H1 H 0 1 N N N N N N -56.193 -6.294 -20.468 5.538 0.347 2.045 H7 X5X 37 X5X H6 H2 H 0 1 N N N N N N -56.798 -7.915 -20.950 5.615 -0.883 0.762 H6 X5X 38 X5X H20 H3 H 0 1 N N N N N N -48.669 -5.588 -29.362 -7.928 4.127 2.021 H20 X5X 39 X5X H9 H4 H 0 1 N N N N N N -56.400 -6.805 -22.963 4.703 2.007 0.403 H9 X5X 40 X5X H8 H5 H 0 1 N N N N N N -58.178 -6.712 -22.722 4.780 0.777 -0.880 H8 X5X 41 X5X H10 H6 H 0 1 N N N N N N -57.961 -4.360 -22.044 3.161 -0.626 0.368 H10 X5X 42 X5X H11 H7 H 0 1 N N N N N N -56.184 -4.454 -22.291 3.084 0.604 1.652 H11 X5X 43 X5X H17 H8 H 0 1 N N N N N N -53.460 -4.595 -30.552 -4.617 3.378 -1.203 H17 X5X 44 X5X H18 H9 H 0 1 N N N N N N -53.570 -3.155 -29.483 -5.086 1.868 -2.020 H18 X5X 45 X5X H12 H10 H 0 1 N N N N N N -58.336 -4.863 -24.419 2.249 2.264 0.010 H12 X5X 46 X5X H13 H11 H 0 1 N N N N N N -57.286 -3.419 -24.225 2.326 1.034 -1.274 H13 X5X 47 X5X H15 H12 H 0 1 N N N N N N -54.806 -6.018 -26.786 -1.778 0.916 1.061 H15 X5X 48 X5X H19 H13 H 0 1 N N N N N N -51.097 -5.927 -29.175 -5.808 4.146 0.768 H19 X5X 49 X5X H4 H14 H 0 1 N N N N N N -59.013 -4.750 -20.625 6.872 -0.390 -1.239 H4 X5X 50 X5X H14 H15 H 0 1 N N N N N N -56.297 -6.140 -24.968 0.753 0.018 0.840 H14 X5X 51 X5X H5 H16 H 0 1 N N N N N N -58.739 -7.622 -19.844 7.128 1.766 0.714 H5 X5X 52 X5X H16 H17 H 0 1 N N N N N N -53.427 -3.460 -27.141 -2.421 1.874 -1.622 H16 X5X 53 X5X H3 H18 H 0 1 N N N N N N -62.208 -5.468 -22.074 9.200 1.447 -3.397 H3 X5X 54 X5X H1 H19 H 0 1 N N N N N N -61.497 -4.267 -20.943 8.858 -0.266 -3.057 H1 X5X 55 X5X H2 H20 H 0 1 N N N N N N -60.728 -4.563 -22.539 7.540 0.824 -3.551 H2 X5X 56 X5X H21 H21 H 0 1 N N N N N N -47.783 -3.394 -30.033 -9.551 2.309 1.666 H21 X5X 57 X5X H22 H22 H 0 1 N N N N N N -49.321 -1.539 -30.517 -9.056 0.513 0.056 H22 X5X 58 X5X H23 H23 H 0 1 N N N N N N -51.752 -1.871 -30.338 -6.937 0.534 -1.198 H23 X5X 59 X5X H24 H24 H 0 1 N N N N N N -53.800 -7.018 -25.147 -1.424 -0.957 -1.334 H24 X5X 60 X5X H26 H25 H 0 1 N N N N N N -51.228 -5.299 -23.011 -3.949 -2.984 0.753 H26 X5X 61 X5X H27 H26 H 0 1 N N N N N N -51.065 -9.080 -24.978 -0.914 -3.796 -1.138 H27 X5X 62 X5X H28 H27 H 0 1 N N N N N N -51.535 -8.912 -23.253 -0.231 -4.631 0.278 H28 X5X 63 X5X H29 H28 H 0 1 N N N N N N -52.717 -8.520 -24.548 -1.831 -5.100 -0.345 H29 X5X 64 X5X H30 H29 H 0 1 N N N N N N -49.198 -7.712 -24.810 -2.791 -4.678 2.010 H30 X5X 65 X5X H31 H30 H 0 1 N N N N N N -49.299 -6.001 -24.272 -1.153 -4.225 2.541 H31 X5X 66 X5X H32 H31 H 0 1 N N N N N N -49.412 -7.329 -23.068 -2.508 -3.095 2.773 H32 X5X 67 X5X H33 H32 H 0 1 N N N N N N -52.947 -4.486 -23.986 -3.513 -0.794 0.757 H33 X5X 68 X5X H34 H34 H 0 1 N N N N N N -53.618 -7.721 -21.101 -3.897 -4.956 -2.217 H34 X5X 69 X5X H35 H35 H 0 1 N N N N N N -56.860 -4.700 -17.944 8.777 -0.254 3.292 H35 X5X 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5X C1 C2 SING N N 1 X5X C2 O1 DOUB N N 2 X5X C2 N1 SING N N 3 X5X N1 C3 SING N N 4 X5X C3 C4 SING N N 5 X5X C4 C5 SING N N 6 X5X C5 C6 SING N N 7 X5X C6 C7 SING N N 8 X5X C7 N2 SING N N 9 X5X N2 C8 SING N N 10 X5X C8 O2 DOUB N N 11 X5X C8 C9 SING N N 12 X5X C9 N3 SING N N 13 X5X N3 C10 SING N N 14 X5X C10 O3 DOUB N N 15 X5X C10 C11 SING N N 16 X5X C11 C12 SING N N 17 X5X C12 C13 DOUB Y N 18 X5X C13 C14 SING Y N 19 X5X C14 C15 DOUB Y N 20 X5X C15 C16 SING Y N 21 X5X C16 C17 DOUB Y N 22 X5X C9 C18 SING N N 23 X5X C18 N4 SING N N 24 X5X N4 C19 SING N N 25 X5X C19 C20 SING N N 26 X5X C20 O4 DOUB N N 27 X5X C20 O5 SING N N 28 X5X C19 C21 SING N N 29 X5X C21 C22 SING N N 30 X5X C21 C23 SING N N 31 X5X C21 S1 SING N N 32 X5X C3 C24 SING N N 33 X5X C24 O6 DOUB N N 34 X5X C24 O7 SING N N 35 X5X C12 C17 SING Y N 36 X5X C18 S1 SING N N 37 X5X C4 H7 SING N N 38 X5X C4 H6 SING N N 39 X5X C14 H20 SING N N 40 X5X C5 H9 SING N N 41 X5X C5 H8 SING N N 42 X5X C6 H10 SING N N 43 X5X C6 H11 SING N N 44 X5X C11 H17 SING N N 45 X5X C11 H18 SING N N 46 X5X C7 H12 SING N N 47 X5X C7 H13 SING N N 48 X5X C9 H15 SING N N 49 X5X C13 H19 SING N N 50 X5X N1 H4 SING N N 51 X5X N2 H14 SING N N 52 X5X C3 H5 SING N N 53 X5X N3 H16 SING N N 54 X5X C1 H3 SING N N 55 X5X C1 H1 SING N N 56 X5X C1 H2 SING N N 57 X5X C15 H21 SING N N 58 X5X C16 H22 SING N N 59 X5X C17 H23 SING N N 60 X5X C18 H24 SING N N 61 X5X C19 H26 SING N N 62 X5X C22 H27 SING N N 63 X5X C22 H28 SING N N 64 X5X C22 H29 SING N N 65 X5X C23 H30 SING N N 66 X5X C23 H31 SING N N 67 X5X C23 H32 SING N N 68 X5X N4 H33 SING N N 69 X5X O5 H34 SING N N 70 X5X O7 H35 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5X InChI InChI 1.06 "InChI=1S/C24H34N4O7S/c1-14(29)26-16(22(32)33)11-7-8-12-25-20(31)18(21-28-19(23(34)35)24(2,3)36-21)27-17(30)13-15-9-5-4-6-10-15/h4-6,9-10,16,18-19,21,28H,7-8,11-13H2,1-3H3,(H,25,31)(H,26,29)(H,27,30)(H,32,33)(H,34,35)/t16-,18+,19-,21+/m0/s1" X5X InChIKey InChI 1.06 JXFMICAVKFQPRG-GZMOKQHVSA-N X5X SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CCCCNC(=O)[C@@H](NC(=O)Cc1ccccc1)[C@@H]2N[C@@H](C(O)=O)C(C)(C)S2)C(O)=O" X5X SMILES CACTVS 3.385 "CC(=O)N[CH](CCCCNC(=O)[CH](NC(=O)Cc1ccccc1)[CH]2N[CH](C(O)=O)C(C)(C)S2)C(O)=O" X5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCCCNC(=O)[C@H]([C@@H]1N[C@H](C(S1)(C)C)C(=O)O)NC(=O)Cc2ccccc2)C(=O)O" X5X SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCCCNC(=O)C(C1NC(C(S1)(C)C)C(=O)O)NC(=O)Cc2ccccc2)C(=O)O" # _pdbx_chem_comp_identifier.comp_id X5X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-2-[(1~{R})-2-[[(5~{S})-5-acetamido-6-oxidanyl-6-oxidanylidene-hexyl]amino]-2-oxidanylidene-1-(2-phenylethanoylamino)ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5X "Create component" 2023-10-25 PDBE X5X "Initial release" 2024-07-31 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X5X _pdbx_chem_comp_synonyms.name PenG-Lys _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #