data_X5Z # _chem_comp.id X5Z _chem_comp.name "AZIDOBIS (DIMETHYLGLYOXIMATO) PYRIDINECOBALT" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 Co N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-10-31 _chem_comp.pdbx_modified_date 2024-02-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.328 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8EYZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5Z C22 C1 C 0 1 N N N N N N 33.627 -7.489 35.073 ? ? ? C22 X5Z 1 X5Z C21 C2 C 0 1 N N N N N N 34.393 -11.332 38.581 ? ? ? C21 X5Z 2 X5Z C20 C3 C 0 1 N N N N N N 35.825 -11.023 38.602 ? ? ? C20 X5Z 3 X5Z C23 C4 C 0 1 N N N N N N 35.040 -7.125 35.149 ? ? ? C23 X5Z 4 X5Z C24 C5 C 0 1 N N N N N N 36.813 -11.817 39.400 ? ? ? C24 X5Z 5 X5Z C25 C6 C 0 1 N N N N N N 33.732 -12.360 39.423 ? ? ? C25 X5Z 6 X5Z C26 C7 C 0 1 N N N N N N 32.651 -6.829 34.155 ? ? ? C26 X5Z 7 X5Z C27 C8 C 0 1 N N N N N N 35.632 -6.000 34.387 ? ? ? C27 X5Z 8 X5Z N09 N1 N 0 1 N N N N N N 36.149 -10.012 37.861 ? ? ? N09 X5Z 9 X5Z N10 N2 N 0 1 N N N N N N 33.734 -10.572 37.749 ? ? ? N10 X5Z 10 X5Z N11 N3 N 0 1 N N N N N N 33.321 -8.456 35.860 ? ? ? N11 X5Z 11 X5Z N12 N4 N 0 1 N N N N N N 35.698 -7.890 35.957 ? ? ? N12 X5Z 12 X5Z N13 N5 N 0 1 N N N N N N 34.268 -8.044 38.344 ? ? ? N13 X5Z 13 X5Z N14 N6 N 1 1 N N N N N N 35.073 -7.332 38.679 ? ? ? N14 X5Z 14 X5Z N15 N7 N -1 1 N N N N N N 35.834 -6.544 39.137 ? ? ? N15 X5Z 15 X5Z O03 O1 O 0 1 N N N N N N 37.398 -9.547 37.785 ? ? ? O03 X5Z 16 X5Z O04 O2 O 0 1 N N N N N N 32.418 -10.692 37.588 ? ? ? O04 X5Z 17 X5Z O05 O3 O 0 1 N N N N N N 32.043 -8.889 35.907 ? ? ? O05 X5Z 18 X5Z O06 O4 O 0 1 N N N N N N 37.022 -7.691 36.131 ? ? ? O06 X5Z 19 X5Z CO01 CO1 CO 0 0 N N N N N N 34.731 -9.246 36.862 ? ? ? CO01 X5Z 20 X5Z H1 H1 H 0 1 N N N N N N 36.289 -12.619 39.941 ? ? ? H1 X5Z 21 X5Z H2 H2 H 0 1 N N N N N N 37.560 -12.259 38.724 ? ? ? H2 X5Z 22 X5Z H3 H3 H 0 1 N N N N N N 37.317 -11.157 40.121 ? ? ? H3 X5Z 23 X5Z H4 H4 H 0 1 N N N N N N 34.487 -12.871 40.039 ? ? ? H4 X5Z 24 X5Z H5 H5 H 0 1 N N N N N N 32.991 -11.877 40.077 ? ? ? H5 X5Z 25 X5Z H6 H6 H 0 1 N N N N N N 33.228 -13.094 38.777 ? ? ? H6 X5Z 26 X5Z H7 H7 H 0 1 N N N N N N 31.657 -7.282 34.288 ? ? ? H7 X5Z 27 X5Z H8 H8 H 0 1 N N N N N N 32.598 -5.755 34.387 ? ? ? H8 X5Z 28 X5Z H9 H9 H 0 1 N N N N N N 32.978 -6.964 33.114 ? ? ? H9 X5Z 29 X5Z H10 H10 H 0 1 N N N N N N 36.706 -5.929 34.613 ? ? ? H10 X5Z 30 X5Z H11 H11 H 0 1 N N N N N N 35.494 -6.174 33.310 ? ? ? H11 X5Z 31 X5Z H12 H12 H 0 1 N N N N N N 35.134 -5.062 34.673 ? ? ? H12 X5Z 32 X5Z H14 H14 H 0 1 N N N N N N 37.962 -10.057 38.355 ? ? ? H14 X5Z 33 X5Z H15 H15 H 0 1 N N N N N N 32.099 -11.415 38.115 ? ? ? H15 X5Z 34 X5Z H16 H16 H 0 1 N N N N N N 31.973 -9.603 36.530 ? ? ? H16 X5Z 35 X5Z H17 H17 H 0 1 N N N N N N 37.360 -8.328 36.750 ? ? ? H17 X5Z 36 X5Z N1 N8 N 1 1 Y Y N N N N ? ? ? ? ? ? N1 X5Z 37 X5Z C2 C9 C 0 1 Y Y N N N N ? ? ? ? ? ? C2 X5Z 38 X5Z C3 C10 C 0 1 Y Y N N N N ? ? ? ? ? ? C3 X5Z 39 X5Z C4 C11 C 0 1 Y Y N N N N ? ? ? ? ? ? C4 X5Z 40 X5Z C5 C12 C 0 1 Y Y N N N N ? ? ? ? ? ? C5 X5Z 41 X5Z C6 C13 C 0 1 Y Y N N N N ? ? ? ? ? ? C6 X5Z 42 X5Z C7 C14 C 0 1 N Y N N N N ? ? ? ? ? ? C7 X5Z 43 X5Z C8 C15 C 0 1 N Y N N N N ? ? ? ? ? ? C8 X5Z 44 X5Z H18 H18 H 0 1 N Y N N N N ? ? ? ? ? ? H18 X5Z 45 X5Z H19 H19 H 0 1 N Y N N N N ? ? ? ? ? ? H19 X5Z 46 X5Z H20 H20 H 0 1 N Y N N N N ? ? ? ? ? ? H20 X5Z 47 X5Z H21 H21 H 0 1 N Y N N N N ? ? ? ? ? ? H21 X5Z 48 X5Z H22 H22 H 0 1 N Y N N N N ? ? ? ? ? ? H22 X5Z 49 X5Z H23 H23 H 0 1 N Y N N N N ? ? ? ? ? ? H23 X5Z 50 X5Z H24 H24 H 0 1 N Y N N N N ? ? ? ? ? ? H24 X5Z 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5Z C26 C22 SING N N 1 X5Z C27 C23 SING N N 2 X5Z C22 C23 DOUB N N 3 X5Z C22 N11 SING N N 4 X5Z C23 N12 SING N N 5 X5Z N11 O05 SING N N 6 X5Z N11 CO01 SING N N 7 X5Z N12 O06 SING N N 8 X5Z N12 CO01 SING N N 9 X5Z CO01 N10 SING N N 10 X5Z CO01 N09 SING N N 11 X5Z CO01 N13 SING N N 12 X5Z O04 N10 SING N N 13 X5Z N10 C21 SING N N 14 X5Z O03 N09 SING N N 15 X5Z N09 C20 SING N N 16 X5Z N13 N14 DOUB N N 17 X5Z C21 C20 DOUB N N 18 X5Z C21 C25 SING N N 19 X5Z C20 C24 SING N N 20 X5Z N14 N15 DOUB N N 21 X5Z C24 H1 SING N N 22 X5Z C24 H2 SING N N 23 X5Z C24 H3 SING N N 24 X5Z C25 H4 SING N N 25 X5Z C25 H5 SING N N 26 X5Z C25 H6 SING N N 27 X5Z C26 H7 SING N N 28 X5Z C26 H8 SING N N 29 X5Z C26 H9 SING N N 30 X5Z C27 H10 SING N N 31 X5Z C27 H11 SING N N 32 X5Z C27 H12 SING N N 33 X5Z O03 H14 SING N N 34 X5Z O04 H15 SING N N 35 X5Z O05 H16 SING N N 36 X5Z O06 H17 SING N N 37 X5Z CO01 N1 SING N N 38 X5Z N1 C2 SING Y N 39 X5Z C2 C3 DOUB Y N 40 X5Z C3 C4 SING Y N 41 X5Z C4 C5 DOUB Y N 42 X5Z C5 C6 SING Y N 43 X5Z C6 N1 DOUB Y N 44 X5Z C4 C7 SING N N 45 X5Z C7 C8 DOUB N N 46 X5Z C2 H18 SING N N 47 X5Z C3 H19 SING N N 48 X5Z C5 H20 SING N N 49 X5Z C6 H21 SING N N 50 X5Z C7 H22 SING N N 51 X5Z C8 H23 SING N N 52 X5Z C8 H24 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5Z SMILES ACDLabs 12.01 "C=Cc1cc[n+](cc1)[Co]12(\N=[N+]=[N-])(N(O)C(C)=C(C)N1O)N(O)C(C)=C(C)N2O" X5Z InChI InChI 1.06 "InChI=1S/C7H7N.2C4H8N2O2.Co.N3/c1-2-7-3-5-8-6-4-7;2*1-3(5-7)4(2)6-8;;1-3-2/h2-6H,1H2;2*7-8H,1-2H3;;/q;2*-2;+6;-1/b;2*4-3-;;" X5Z InChIKey InChI 1.06 KKXSWROVWVQWSY-GLPMUSQESA-N X5Z SMILES_CANONICAL CACTVS 3.385 "CC1=C(C)N(O)[Co]2(N=[N+]=[N-])(N1O)(N(O)C(=C(C)N2O)C)[n+]3ccc(C=C)cc3" X5Z SMILES CACTVS 3.385 "CC1=C(C)N(O)[Co]2(N=[N+]=[N-])(N1O)(N(O)C(=C(C)N2O)C)[n+]3ccc(C=C)cc3" X5Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(N([Co]2(N1O)(N(C(=C(N2O)C)C)O)(N=[N+]=[N-])[n+]3ccc(cc3)C=C)O)C" X5Z SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(N([Co]2(N1O)(N(C(=C(N2O)C)C)O)(N=[N+]=[N-])[n+]3ccc(cc3)C=C)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X5Z "SYSTEMATIC NAME" ACDLabs 12.01 "azidobis[N~2~,N~3~-dihydroxybut-2-ene-2,3-diaminato(2-)-kappa~2~N,N'](4-ethenylpyridine)cobalt(1+)" X5Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-azido-5-(4-ethenylpyridin-1-ium-1-yl)-2,3,7,8-tetramethyl-1,4,6,9-tetrakis(oxidanyl)-1,4,6,9-tetraza-5$l^{6}-cobaltaspiro[4.4]nona-2,7-diene" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5Z "Create component" 2022-10-31 RCSB X5Z "Modify charge" 2022-11-09 RCSB X5Z "Modify coordinates" 2022-11-09 RCSB X5Z "Modify descriptor" 2022-11-09 RCSB X5Z "Initial release" 2022-11-23 RCSB X5Z "Modify coordinates" 2024-02-07 RCSB #