data_X6A # _chem_comp.id X6A _chem_comp.name "2-{[(2-aminopyrimidin-5-yl)methyl]amino}-4-chloro-5-nitrobenzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H11 Cl N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-02 _chem_comp.pdbx_modified_date 2012-08-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.707 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QWJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6A N01 N01 N 0 1 N N N -37.441 -81.846 -47.707 0.938 -0.151 0.032 N01 X6A 1 X6A N02 N02 N 0 1 N N N -40.051 -81.375 -50.853 -1.133 -3.790 -0.071 N02 X6A 2 X6A N03 N03 N 0 1 Y N N -35.892 -82.993 -43.394 5.159 0.311 -1.159 N03 X6A 3 X6A N04 N04 N 0 1 Y N N -35.764 -84.791 -45.010 5.148 0.554 1.140 N04 X6A 4 X6A N05 N05 N 1 1 N N N -42.594 -80.171 -46.725 -4.709 -0.094 -0.005 N05 X6A 5 X6A N06 N06 N 0 1 N N N -35.610 -85.133 -42.790 7.146 0.047 0.041 N06 X6A 6 X6A C07 C07 C 0 1 Y N N -40.988 -81.009 -48.229 -2.564 -1.323 0.022 C07 X6A 7 X6A C08 C08 C 0 1 Y N N -39.652 -81.453 -48.513 -1.167 -1.348 0.030 C08 X6A 8 X6A C09 C09 C 0 1 Y N N -38.668 -81.451 -47.470 -0.451 -0.140 0.024 C09 X6A 9 X6A C10 C10 C 0 1 Y N N -39.055 -81.020 -46.171 -1.139 1.066 0.012 C10 X6A 10 X6A C11 C11 C 0 1 Y N N -40.363 -80.592 -45.888 -2.520 1.074 0.004 C11 X6A 11 X6A C12 C12 C 0 1 Y N N -41.368 -80.570 -46.926 -3.230 -0.118 0.009 C12 X6A 12 X6A C13 C13 C 0 1 N N N -39.356 -81.875 -49.786 -0.448 -2.635 0.044 C13 X6A 13 X6A C14 C14 C 0 1 N N N -36.264 -81.477 -46.868 1.681 1.104 -0.097 C14 X6A 14 X6A C15 C15 C 0 1 Y N N -36.076 -82.489 -45.770 3.160 0.818 -0.060 C15 X6A 15 X6A C16 C16 C 0 1 Y N N -36.048 -82.117 -44.423 3.861 0.558 -1.227 C16 X6A 16 X6A C17 C17 C 0 1 Y N N -35.756 -84.302 -43.737 5.788 0.310 0.007 C17 X6A 17 X6A C18 C18 C 0 1 Y N N -35.927 -83.861 -46.007 3.850 0.809 1.143 C18 X6A 18 X6A O19 O19 O 0 1 N N N -38.491 -82.710 -49.974 0.762 -2.654 0.159 O19 X6A 19 X6A O20 O20 O 0 1 N N N -43.007 -79.737 -45.561 -5.335 -1.139 -0.006 O20 X6A 20 X6A O21 O21 O -1 1 N N N -43.465 -80.186 -47.700 -5.302 0.970 -0.016 O21 X6A 21 X6A CL22 CL22 CL 0 0 N N N -40.677 -80.129 -44.282 -3.374 2.586 -0.011 CL22 X6A 22 X6A HN01 HN01 H 0 0 N N N -37.481 -82.844 -47.666 1.415 -0.990 0.128 HN01 X6A 23 X6A H102 H102 H 0 0 N N N -39.846 -81.696 -51.778 -2.098 -3.775 -0.163 H102 X6A 24 X6A H202 H202 H 0 0 N N N -40.764 -80.689 -50.708 -0.660 -4.637 -0.062 H202 X6A 25 X6A H106 H106 H 0 0 N N N -35.521 -86.055 -43.166 7.618 0.043 0.888 H106 X6A 26 X6A H206 H206 H 0 0 N N N -34.787 -84.904 -42.270 7.626 -0.134 -0.782 H206 X6A 27 X6A H07 H07 H 0 1 N N N -41.722 -81.007 -49.021 -3.121 -2.249 0.021 H07 X6A 28 X6A H10 H10 H 0 1 N N N -38.321 -81.022 -45.378 -0.594 1.998 0.008 H10 X6A 29 X6A H114 H114 H 0 0 N N N -35.362 -81.452 -47.498 1.427 1.581 -1.044 H114 X6A 30 X6A H214 H214 H 0 0 N N N -36.432 -80.485 -46.423 1.419 1.769 0.726 H214 X6A 31 X6A H16 H16 H 0 1 N N N -36.157 -81.069 -44.184 3.354 0.558 -2.181 H16 X6A 32 X6A H18 H18 H 0 1 N N N -35.941 -84.207 -47.030 3.333 1.009 2.070 H18 X6A 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6A N01 C09 SING N N 1 X6A N01 C14 SING N N 2 X6A N01 HN01 SING N N 3 X6A N02 C13 SING N N 4 X6A N02 H102 SING N N 5 X6A N02 H202 SING N N 6 X6A N04 C17 DOUB Y N 7 X6A N05 O20 DOUB N N 8 X6A N06 H106 SING N N 9 X6A N06 H206 SING N N 10 X6A C07 C12 SING Y N 11 X6A C07 H07 SING N N 12 X6A C08 C07 DOUB Y N 13 X6A C08 C09 SING Y N 14 X6A C09 C10 DOUB Y N 15 X6A C10 C11 SING Y N 16 X6A C10 H10 SING N N 17 X6A C11 CL22 SING N N 18 X6A C12 N05 SING N N 19 X6A C12 C11 DOUB Y N 20 X6A C13 C08 SING N N 21 X6A C14 C15 SING N N 22 X6A C14 H114 SING N N 23 X6A C14 H214 SING N N 24 X6A C15 C16 SING Y N 25 X6A C16 N03 DOUB Y N 26 X6A C16 H16 SING N N 27 X6A C17 N03 SING Y N 28 X6A C17 N06 SING N N 29 X6A C18 C15 DOUB Y N 30 X6A C18 N04 SING Y N 31 X6A C18 H18 SING N N 32 X6A O19 C13 DOUB N N 33 X6A O21 N05 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6A SMILES ACDLabs 12.01 "[O-][N+](=O)c2c(Cl)cc(NCc1cnc(nc1)N)c(C(=O)N)c2" X6A SMILES_CANONICAL CACTVS 3.370 "NC(=O)c1cc(c(Cl)cc1NCc2cnc(N)nc2)[N+]([O-])=O" X6A SMILES CACTVS 3.370 "NC(=O)c1cc(c(Cl)cc1NCc2cnc(N)nc2)[N+]([O-])=O" X6A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1c(c(cc(c1[N+](=O)[O-])Cl)NCc2cnc(nc2)N)C(=O)N" X6A SMILES "OpenEye OEToolkits" 1.7.0 "c1c(c(cc(c1[N+](=O)[O-])Cl)NCc2cnc(nc2)N)C(=O)N" X6A InChI InChI 1.03 "InChI=1S/C12H11ClN6O3/c13-8-2-9(7(11(14)20)1-10(8)19(21)22)16-3-6-4-17-12(15)18-5-6/h1-2,4-5,16H,3H2,(H2,14,20)(H2,15,17,18)" X6A InChIKey InChI 1.03 JNHRQRICVGMRKT-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6A "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2-aminopyrimidin-5-yl)methyl]amino}-4-chloro-5-nitrobenzamide" X6A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[(2-azanylpyrimidin-5-yl)methylamino]-4-chloro-5-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6A "Create component" 2011-03-02 RCSB X6A "Modify descriptor" 2011-06-04 RCSB #