data_X6D # _chem_comp.id X6D _chem_comp.name "6-BROMO-7-[4-(4-CHLOROBENZYL)PIPERAZIN-1-YL]-2-[4-(MORPHOLIN-4-YLMETHYL)PHENYL]-3H-IMIDAZO[4,5-B]PYRIDINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H30 Br Cl N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CTT137444 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-02-17 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 581.934 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2X6D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6D CAN CAN C 0 1 N N N 0.634 37.520 83.674 -7.821 0.913 -0.678 CAN X6D 1 X6D CAL CAL C 0 1 N N N 0.070 38.879 83.981 -8.519 0.381 0.577 CAL X6D 2 X6D OAY OAY O 0 1 N N N 0.772 39.398 85.158 -8.479 1.381 1.599 OAY X6D 3 X6D CAM CAM C 0 1 N N N 0.594 38.571 86.301 -7.154 1.786 1.955 CAM X6D 4 X6D CAO CAO C 0 1 N N N 1.148 37.195 85.977 -6.443 2.333 0.715 CAO X6D 5 X6D NBI NBI N 0 1 N N N 0.423 36.641 84.832 -6.446 1.306 -0.338 NBI X6D 6 X6D CAT CAT C 0 1 N N N 0.983 35.324 84.540 -5.722 1.770 -1.528 CAT X6D 7 X6D CBB CBB C 0 1 Y N N 0.344 34.634 83.345 -4.260 1.929 -1.197 CBB X6D 8 X6D CAG CAG C 0 1 Y N N -0.549 33.641 83.642 -3.395 0.863 -1.369 CAG X6D 9 X6D CAI CAI C 0 1 Y N N -1.163 32.966 82.613 -2.056 1.002 -1.068 CAI X6D 10 X6D CAH CAH C 0 1 Y N N 0.657 34.942 82.025 -3.788 3.142 -0.727 CAH X6D 11 X6D CAJ CAJ C 0 1 Y N N 0.048 34.260 80.996 -2.451 3.294 -0.422 CAJ X6D 12 X6D CBD CBD C 0 1 Y N N -0.905 33.310 81.301 -1.575 2.221 -0.589 CBD X6D 13 X6D CBE CBE C 0 1 Y N N -1.488 32.515 80.321 -0.140 2.377 -0.264 CBE X6D 14 X6D NAX NAX N 0 1 Y N N -1.403 32.624 79.003 0.441 3.524 0.212 NAX X6D 15 X6D NAW NAW N 0 1 Y N N -2.195 31.421 80.581 0.766 1.439 -0.382 NAW X6D 16 X6D CBH CBH C 0 1 Y N N -2.560 30.825 79.465 1.970 1.924 0.002 CBH X6D 17 X6D CBG CBG C 0 1 Y N N -2.068 31.628 78.439 1.783 3.262 0.387 CBG X6D 18 X6D NAV NAV N 0 1 Y N N -2.281 31.331 77.149 2.807 3.987 0.814 NAV X6D 19 X6D CAK CAK C 0 1 Y N N -2.977 30.245 76.841 4.026 3.490 0.891 CAK X6D 20 X6D CBC CBC C 0 1 Y N N -3.539 29.399 77.814 4.296 2.182 0.528 CBC X6D 21 X6D BR BR BR 0 0 N N N -4.455 27.896 77.120 6.057 1.504 0.652 BRA X6D 22 X6D CBF CBF C 0 1 Y N N -3.324 29.682 79.168 3.261 1.369 0.079 CBF X6D 23 X6D NBK NBK N 0 1 N N N -3.865 28.930 80.291 3.496 0.048 -0.289 NBK X6D 24 X6D CAR CAR C 0 1 N N N -5.205 28.761 80.421 3.177 -0.169 -1.707 CAR X6D 25 X6D CAP CAP C 0 1 N N N -5.840 27.663 81.261 3.523 -1.610 -2.089 CAP X6D 26 X6D CAS CAS C 0 1 N N N -3.580 29.263 81.737 2.740 -0.878 0.566 CAS X6D 27 X6D CAQ CAQ C 0 1 N N N -4.870 29.178 82.726 3.086 -2.319 0.183 CAQ X6D 28 X6D NBJ NBJ N 0 1 N N N -5.344 27.784 82.675 2.767 -2.536 -1.235 NBJ X6D 29 X6D CAU CAU C 0 1 N N N -6.309 26.768 83.174 1.323 -2.414 -1.475 CAU X6D 30 X6D CBA CBA C 0 1 Y N N -6.059 25.309 82.782 0.601 -3.535 -0.773 CBA X6D 31 X6D CAE CAE C 0 1 Y N N -6.886 24.631 81.846 0.164 -3.368 0.528 CAE X6D 32 X6D CAC CAC C 0 1 Y N N -6.584 23.304 81.567 -0.498 -4.396 1.172 CAC X6D 33 X6D CAZ CAZ C 0 1 Y N N -5.534 22.648 82.212 -0.725 -5.591 0.515 CAZ X6D 34 X6D CL CL CL 0 0 N N N -5.197 21.015 81.810 -1.558 -6.882 1.323 CLA X6D 35 X6D CAD CAD C 0 1 Y N N -4.745 23.321 83.142 -0.289 -5.758 -0.787 CAD X6D 36 X6D CAF CAF C 0 1 Y N N -5.012 24.655 83.438 0.370 -4.728 -1.432 CAF X6D 37 X6D HAN1 HAN1 H 0 0 N N N 0.126 37.099 82.794 -7.800 0.134 -1.440 HAN1 X6D 38 X6D HAN2 HAN2 H 0 0 N N N 1.710 37.604 83.463 -8.364 1.779 -1.057 HAN2 X6D 39 X6D HAL1 HAL1 H 0 0 N N N 0.221 39.552 83.124 -9.557 0.142 0.343 HAL1 X6D 40 X6D HAL2 HAL2 H 0 0 N N N -1.010 38.811 84.177 -8.008 -0.516 0.925 HAL2 X6D 41 X6D HAM1 HAM1 H 0 0 N N N 1.131 38.999 87.161 -7.205 2.564 2.718 HAM1 X6D 42 X6D HAM2 HAM2 H 0 0 N N N -0.473 38.501 86.558 -6.603 0.930 2.343 HAM2 X6D 43 X6D HAO1 HAO1 H 0 0 N N N 2.217 37.277 85.731 -6.963 3.221 0.358 HAO1 X6D 44 X6D HAO2 HAO2 H 0 0 N N N 1.025 36.533 86.847 -5.414 2.590 0.969 HAO2 X6D 45 X6D HAT1 HAT1 H 0 0 N N N 2.055 35.450 84.327 -5.835 1.040 -2.330 HAT1 X6D 46 X6D HAT2 HAT2 H 0 0 N N N 0.790 34.690 85.418 -6.128 2.729 -1.850 HAT2 X6D 47 X6D HAG HAG H 0 1 N N N -0.769 33.391 84.669 -3.769 -0.080 -1.740 HAG X6D 48 X6D HAH HAH H 0 1 N N N 1.378 35.716 81.808 -4.468 3.971 -0.599 HAH X6D 49 X6D HAI HAI H 0 1 N N N -1.851 32.163 82.832 -1.382 0.169 -1.203 HAI X6D 50 X6D HAJ HAJ H 0 1 N N N 0.311 34.465 79.969 -2.084 4.241 -0.056 HAJ X6D 51 X6D HAX HAX H 0 1 N N N -0.914 33.345 78.512 -0.009 4.364 0.391 HAX X6D 52 X6D HAK HAK H 0 1 N N N -3.118 30.000 75.799 4.830 4.117 1.244 HAK X6D 53 X6D HAR1 HAR1 H 0 0 N N N -5.569 29.701 80.861 2.114 0.005 -1.872 HAR1 X6D 54 X6D HAR2 HAR2 H 0 0 N N N -5.490 28.455 79.404 3.759 0.520 -2.319 HAR2 X6D 55 X6D HAS1 HAS1 H 0 0 N N N -2.830 28.547 82.104 3.002 -0.706 1.610 HAS1 X6D 56 X6D HAS2 HAS2 H 0 0 N N N -3.241 30.309 81.755 1.671 -0.712 0.427 HAS2 X6D 57 X6D HAP1 HAP1 H 0 0 N N N -6.935 27.769 81.242 3.261 -1.782 -3.133 HAP1 X6D 58 X6D HAP2 HAP2 H 0 0 N N N -5.568 26.678 80.854 4.592 -1.777 -1.950 HAP2 X6D 59 X6D HAQ1 HAQ1 H 0 0 N N N -4.586 29.451 83.753 4.149 -2.494 0.348 HAQ1 X6D 60 X6D HAQ2 HAQ2 H 0 0 N N N -5.659 29.877 82.410 2.504 -3.008 0.796 HAQ2 X6D 61 X6D HAU1 HAU1 H 0 0 N N N -6.283 26.814 84.273 0.971 -1.457 -1.090 HAU1 X6D 62 X6D HAU2 HAU2 H 0 0 N N N -7.269 27.030 82.706 1.127 -2.470 -2.546 HAU2 X6D 63 X6D HAE HAE H 0 1 N N N -7.718 25.129 81.370 0.342 -2.434 1.041 HAE X6D 64 X6D HAF HAF H 0 1 N N N -4.415 25.180 84.169 0.707 -4.857 -2.450 HAF X6D 65 X6D HAC HAC H 0 1 N N N -7.173 22.769 80.837 -0.839 -4.265 2.189 HAC X6D 66 X6D HAD HAD H 0 1 N N N -3.929 22.810 83.632 -0.465 -6.692 -1.301 HAD X6D 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6D CAN CAL SING N N 1 X6D CAN NBI SING N N 2 X6D CAL OAY SING N N 3 X6D OAY CAM SING N N 4 X6D CAM CAO SING N N 5 X6D CAO NBI SING N N 6 X6D NBI CAT SING N N 7 X6D CAT CBB SING N N 8 X6D CBB CAG SING Y N 9 X6D CBB CAH DOUB Y N 10 X6D CAG CAI DOUB Y N 11 X6D CAI CBD SING Y N 12 X6D CAH CAJ SING Y N 13 X6D CAJ CBD DOUB Y N 14 X6D CBD CBE SING Y N 15 X6D CBE NAX SING Y N 16 X6D CBE NAW DOUB Y N 17 X6D NAX CBG SING Y N 18 X6D NAW CBH SING Y N 19 X6D CBH CBG SING Y N 20 X6D CBH CBF DOUB Y N 21 X6D CBG NAV DOUB Y N 22 X6D NAV CAK SING Y N 23 X6D CAK CBC DOUB Y N 24 X6D CBC BR SING N N 25 X6D CBC CBF SING Y N 26 X6D CBF NBK SING N N 27 X6D NBK CAR SING N N 28 X6D NBK CAS SING N N 29 X6D CAR CAP SING N N 30 X6D CAP NBJ SING N N 31 X6D CAS CAQ SING N N 32 X6D CAQ NBJ SING N N 33 X6D NBJ CAU SING N N 34 X6D CAU CBA SING N N 35 X6D CBA CAE SING Y N 36 X6D CBA CAF DOUB Y N 37 X6D CAE CAC DOUB Y N 38 X6D CAC CAZ SING Y N 39 X6D CAZ CL SING N N 40 X6D CAZ CAD DOUB Y N 41 X6D CAD CAF SING Y N 42 X6D CAN HAN1 SING N N 43 X6D CAN HAN2 SING N N 44 X6D CAL HAL1 SING N N 45 X6D CAL HAL2 SING N N 46 X6D CAM HAM1 SING N N 47 X6D CAM HAM2 SING N N 48 X6D CAO HAO1 SING N N 49 X6D CAO HAO2 SING N N 50 X6D CAT HAT1 SING N N 51 X6D CAT HAT2 SING N N 52 X6D CAG HAG SING N N 53 X6D CAH HAH SING N N 54 X6D CAI HAI SING N N 55 X6D CAJ HAJ SING N N 56 X6D NAX HAX SING N N 57 X6D CAK HAK SING N N 58 X6D CAR HAR1 SING N N 59 X6D CAR HAR2 SING N N 60 X6D CAS HAS1 SING N N 61 X6D CAS HAS2 SING N N 62 X6D CAP HAP1 SING N N 63 X6D CAP HAP2 SING N N 64 X6D CAQ HAQ1 SING N N 65 X6D CAQ HAQ2 SING N N 66 X6D CAU HAU1 SING N N 67 X6D CAU HAU2 SING N N 68 X6D CAE HAE SING N N 69 X6D CAF HAF SING N N 70 X6D CAC HAC SING N N 71 X6D CAD HAD SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6D SMILES ACDLabs 10.04 "Clc1ccc(cc1)CN6CCN(c2c(Br)cnc3nc(nc23)c4ccc(cc4)CN5CCOCC5)CC6" X6D SMILES_CANONICAL CACTVS 3.352 "Clc1ccc(CN2CCN(CC2)c3c(Br)cnc4[nH]c(nc34)c5ccc(CN6CCOCC6)cc5)cc1" X6D SMILES CACTVS 3.352 "Clc1ccc(CN2CCN(CC2)c3c(Br)cnc4[nH]c(nc34)c5ccc(CN6CCOCC6)cc5)cc1" X6D SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "c1cc(ccc1CN2CCOCC2)c3[nH]c4c(n3)c(c(cn4)Br)N5CCN(CC5)Cc6ccc(cc6)Cl" X6D SMILES "OpenEye OEToolkits" 1.6.1 "c1cc(ccc1CN2CCOCC2)c3[nH]c4c(n3)c(c(cn4)Br)N5CCN(CC5)Cc6ccc(cc6)Cl" X6D InChI InChI 1.03 "InChI=1S/C28H30BrClN6O/c29-24-17-31-28-25(26(24)36-11-9-34(10-12-36)18-21-3-7-23(30)8-4-21)32-27(33-28)22-5-1-20(2-6-22)19-35-13-15-37-16-14-35/h1-8,17H,9-16,18-19H2,(H,31,32,33)" X6D InChIKey InChI 1.03 IZRXRZKKTJHSGV-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6D "SYSTEMATIC NAME" ACDLabs 10.04 "6-bromo-7-[4-(4-chlorobenzyl)piperazin-1-yl]-2-[4-(morpholin-4-ylmethyl)phenyl]-3H-imidazo[4,5-b]pyridine" X6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "6-bromo-7-[4-[(4-chlorophenyl)methyl]piperazin-1-yl]-2-[4-(morpholin-4-ylmethyl)phenyl]-3H-imidazo[5,4-b]pyridine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6D "Create component" 2010-02-17 EBI X6D "Modify aromatic_flag" 2011-06-04 RCSB X6D "Modify descriptor" 2011-06-04 RCSB X6D "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X6D _pdbx_chem_comp_synonyms.name CTT137444 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##