data_X6I # _chem_comp.id X6I _chem_comp.name "S-{2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]ethyl}-L-cysteine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N3 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-02 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T0V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6I C1 C1 C 0 1 N N N N N N 135.884 141.027 159.348 -2.714 5.027 -0.749 C1 X6I 1 X6I C10 C2 C 0 1 N N N N N N 135.646 133.333 153.158 5.313 -0.343 -0.277 C10 X6I 2 X6I C11 C3 C 0 1 N N R N N N 135.783 133.697 151.684 6.576 -1.117 0.105 C11 X6I 3 X6I C12 C4 C 0 1 N N N N N N 136.843 132.802 151.050 7.586 -1.014 -1.009 C12 X6I 4 X6I C13 C5 C 0 1 Y N N N N N 136.834 138.776 158.997 -1.717 2.849 -0.024 C13 X6I 5 X6I C2 C6 C 0 1 Y N N N N N 136.658 139.796 159.813 -2.817 3.543 -0.507 C2 X6I 6 X6I C3 C7 C 0 1 Y N N N N N 137.863 138.727 161.585 -4.098 1.624 -0.563 C3 X6I 7 X6I C4 C8 C 0 1 Y N N N N N 138.072 137.542 160.650 -3.058 0.854 -0.086 C4 X6I 8 X6I C5 C9 C 0 1 N N N N N N 138.850 136.322 161.142 -3.240 -0.627 0.129 C5 X6I 9 X6I C6 C10 C 0 1 Y N N N N N 137.592 137.571 159.461 -1.831 1.467 0.195 C6 X6I 10 X6I C7 C11 C 0 1 N N N N N N 137.821 136.369 158.545 -0.690 0.682 0.707 C7 X6I 11 X6I C8 C12 C 0 1 N N N N N N 137.119 135.111 156.680 1.567 0.489 1.468 C8 X6I 12 X6I C9 C13 C 0 1 N N N N N N 136.128 135.040 155.524 2.696 0.496 0.435 C9 X6I 13 X6I N1 N1 N 0 1 Y N N N N N 137.213 139.756 161.188 -3.951 2.921 -0.756 N1 X6I 14 X6I N2 N2 N 0 1 N N N N N N 136.879 136.320 157.444 0.435 1.267 0.960 N2 X6I 15 X6I N3 N3 N 0 1 N N N N N N 134.510 133.506 151.012 7.145 -0.550 1.335 N3 X6I 16 X6I O1 O1 O 0 1 N N N N N N 137.994 135.218 161.234 -4.571 -1.000 -0.230 O1 X6I 17 X6I O2 O2 O 0 1 N N N N N N 137.083 134.543 163.550 -5.141 -2.968 1.417 O2 X6I 18 X6I O3 O3 O 0 1 N N N N N N 139.503 134.356 163.151 -6.606 -2.587 -0.733 O3 X6I 19 X6I O4 O4 O 0 1 N N N N N N 137.957 132.779 162.063 -4.226 -3.411 -0.893 O4 X6I 20 X6I O5 O5 O 0 1 N N N N N N 136.844 132.608 149.807 8.497 -0.225 -0.927 O5 X6I 21 X6I O6 O6 O 0 1 N N N N N N 137.717 132.260 151.776 7.473 -1.799 -2.092 O6 X6I 22 X6I O7 O7 O 0 1 N N N N N N 136.302 138.837 157.704 -0.549 3.494 0.226 O7 X6I 23 X6I P1 P1 P 0 1 N N N N N N 138.138 134.204 162.525 -5.117 -2.511 -0.126 P1 X6I 24 X6I S1 S1 S 0 1 N N N N N N 136.913 134.211 154.114 4.098 -0.467 1.064 S1 X6I 25 X6I H3 H1 H 0 1 N N N N N N 135.845 141.766 160.162 -2.379 5.206 -1.770 H3 X6I 26 X6I H2 H2 H 0 1 N N N N N N 136.388 141.469 158.476 -3.690 5.488 -0.600 H2 X6I 27 X6I H1 H3 H 0 1 N N N N N N 134.861 140.733 159.071 -1.998 5.460 -0.050 H1 X6I 28 X6I H12 H4 H 0 1 N N N N N N 134.648 133.624 153.517 5.565 0.705 -0.443 H12 X6I 29 X6I H13 H5 H 0 1 N N N N N N 135.778 132.248 153.282 4.891 -0.764 -1.190 H13 X6I 30 X6I H14 H6 H 0 1 N N N N N N 136.101 134.747 151.600 6.324 -2.165 0.271 H14 X6I 31 X6I H4 H7 H 0 1 N N N N N N 138.265 138.699 162.587 -5.047 1.158 -0.782 H4 X6I 32 X6I H5 H8 H 0 1 N N N N N N 139.661 136.097 160.434 -2.529 -1.174 -0.491 H5 X6I 33 X6I H6 H9 H 0 1 N N N N N N 139.277 136.537 162.133 -3.066 -0.865 1.178 H6 X6I 34 X6I H7 H10 H 0 1 N N N N N N 138.599 135.637 158.701 -0.795 -0.380 0.870 H7 X6I 35 X6I H9 H12 H 0 1 N N N N N N 136.988 134.233 157.330 1.250 -0.537 1.651 H9 X6I 36 X6I H8 H13 H 0 1 N N N N N N 138.145 135.124 156.284 1.924 0.931 2.398 H8 X6I 37 X6I H11 H14 H 0 1 N N N N N N 135.829 136.058 155.233 2.340 0.055 -0.496 H11 X6I 38 X6I H10 H15 H 0 1 N N N N N N 135.239 134.472 155.836 3.014 1.523 0.251 H10 X6I 39 X6I H17 H18 H 0 1 N N N N N N 133.819 134.095 151.432 7.387 0.421 1.207 H17 X6I 40 X6I H15 H19 H 0 1 N N N N N N 134.605 133.741 150.045 6.512 -0.666 2.113 H15 X6I 41 X6I H22 H21 H 0 1 N N N N N N 136.524 133.788 163.691 -5.707 -2.421 1.980 H22 X6I 42 X6I H23 H22 H 0 1 N N N N N N 139.960 133.523 163.122 -6.998 -3.471 -0.702 H23 X6I 43 X6I H24 H23 H 0 1 N N N N N N 138.300 131.739 151.236 8.144 -1.697 -2.780 H24 X6I 44 X6I H18 H24 H 0 1 N N N N N N 135.857 139.668 157.583 0.052 3.527 -0.531 H18 X6I 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6I O5 C12 DOUB N N 1 X6I N3 C11 SING N N 2 X6I C12 C11 SING N N 3 X6I C12 O6 SING N N 4 X6I C11 C10 SING N N 5 X6I C10 S1 SING N N 6 X6I S1 C9 SING N N 7 X6I C9 C8 SING N N 8 X6I C8 N2 SING N N 9 X6I N2 C7 DOUB N N 10 X6I O7 C13 SING N N 11 X6I C7 C6 SING N N 12 X6I C13 C6 DOUB Y N 13 X6I C13 C2 SING Y N 14 X6I C1 C2 SING N N 15 X6I C6 C4 SING Y N 16 X6I C2 N1 DOUB Y N 17 X6I C4 C5 SING N N 18 X6I C4 C3 DOUB Y N 19 X6I C5 O1 SING N N 20 X6I N1 C3 SING Y N 21 X6I O1 P1 SING N N 22 X6I O4 P1 DOUB N N 23 X6I P1 O3 SING N N 24 X6I P1 O2 SING N N 25 X6I C1 H3 SING N N 26 X6I C1 H2 SING N N 27 X6I C1 H1 SING N N 28 X6I C10 H12 SING N N 29 X6I C10 H13 SING N N 30 X6I C11 H14 SING N N 31 X6I C3 H4 SING N N 32 X6I C5 H5 SING N N 33 X6I C5 H6 SING N N 34 X6I C7 H7 SING N N 35 X6I C8 H9 SING N N 36 X6I C8 H8 SING N N 37 X6I C9 H11 SING N N 38 X6I C9 H10 SING N N 39 X6I N3 H17 SING N N 40 X6I N3 H15 SING N N 41 X6I O2 H22 SING N N 42 X6I O3 H23 SING N N 43 X6I O6 H24 SING N N 44 X6I O7 H18 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6I SMILES ACDLabs 12.01 "Oc1c(/C=N/CCSCC(N)C(=O)O)c(cnc1C)COP(=O)(O)O" X6I InChI InChI 1.06 "InChI=1S/C13H20N3O7PS/c1-8-12(17)10(9(4-16-8)6-23-24(20,21)22)5-15-2-3-25-7-11(14)13(18)19/h4-5,11,17H,2-3,6-7,14H2,1H3,(H,18,19)(H2,20,21,22)/b15-5+/t11-/m0/s1" X6I InChIKey InChI 1.06 BWEPWNLQXWSAOF-QZSDQICDSA-N X6I SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NCCSC[C@H](N)C(O)=O)c1O" X6I SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NCCSC[CH](N)C(O)=O)c1O" X6I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/CCSC[C@@H](C(=O)O)N)O" X6I SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NCCSCC(C(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6I "SYSTEMATIC NAME" ACDLabs 12.01 "S-{2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]ethyl}-L-cysteine" X6I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-azanyl-3-[2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]ethylsulfanyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6I "Create component" 2023-06-02 RCSB X6I "Initial release" 2024-07-03 RCSB #