data_X6O # _chem_comp.id X6O _chem_comp.name "(1R,2S,5S)-N-{(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H42 F3 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 601.658 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EZV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6O N1 N1 N 0 1 N N N N N N -19.624 15.860 -27.008 -1.393 1.011 -0.068 N1 X6O 1 X6O N3 N2 N 0 1 N N N N N N -18.111 13.553 -24.732 2.158 0.762 -1.086 N3 X6O 2 X6O C4 C1 C 0 1 N N S N N N -20.742 17.264 -25.451 -0.800 3.132 0.870 C4 X6O 3 X6O C5 C2 C 0 1 N N N N N N -19.534 18.062 -24.992 -1.357 3.794 -0.392 C5 X6O 4 X6O C6 C3 C 0 1 N N N N N N -18.609 18.655 -26.033 -2.627 3.195 -1.001 C6 X6O 5 X6O C7 C4 C 0 1 N N N N N N -19.691 18.936 -23.765 -1.225 5.313 -0.509 C7 X6O 6 X6O C8 C5 C 0 1 N N N N N N -20.746 16.819 -26.894 -1.301 1.717 1.231 C8 X6O 7 X6O C10 C6 C 0 1 N N S N N N -19.977 15.426 -29.370 -3.431 -0.280 0.481 C10 X6O 8 X6O C13 C7 C 0 1 N N N N N N -21.418 13.550 -28.781 -1.767 -1.142 2.133 C13 X6O 9 X6O C15 C8 C 0 1 N N N N N N -19.518 17.304 -30.828 -5.851 -0.522 0.320 C15 X6O 10 X6O C17 C9 C 0 1 N N S N N N -18.199 12.206 -24.166 3.313 -0.050 -0.697 C17 X6O 11 X6O C20 C10 C 0 1 N N N N N N -19.879 10.100 -20.182 4.899 1.109 1.957 C20 X6O 12 X6O C21 C11 C 0 1 N N N N N N -21.021 11.012 -19.711 5.639 2.206 2.743 C21 X6O 13 X6O C22 C12 C 0 1 N N N N N N -20.349 12.180 -20.442 4.931 3.209 1.814 C22 X6O 14 X6O C24 C13 C 0 1 N N S N N N -17.616 11.065 -26.399 4.391 -2.295 -0.905 C24 X6O 15 X6O C26 C14 C 0 1 N N N N N N -19.104 9.776 -27.998 5.411 -4.555 -1.075 C26 X6O 16 X6O C28 C15 C 0 1 N N N N N N -16.467 10.361 -27.084 4.224 -2.623 0.551 C28 X6O 17 X6O C1 C16 C 0 1 N N N N N N -19.168 14.167 -25.294 1.026 0.718 -0.355 C1 X6O 18 X6O O1 O1 O 0 1 N N N N N N -20.261 13.626 -25.467 0.994 0.079 0.675 O1 X6O 19 X6O C2 C17 C 0 1 N N S N N N -18.955 15.602 -25.738 -0.199 1.464 -0.818 C2 X6O 20 X6O N2 N3 N 0 1 N N N N N N -19.146 16.128 -30.344 -4.644 -0.606 -0.274 N2 X6O 21 X6O O2 O2 O 0 1 N N N N N N -20.528 17.907 -30.524 -5.933 -0.176 1.480 O2 X6O 22 X6O C3 C18 C 0 1 N N R N N N -19.581 16.569 -24.743 -0.074 2.965 -0.481 C3 X6O 23 X6O O3 O3 O 0 1 N N N N N N -18.125 14.562 -28.092 -2.328 -0.287 -1.605 O3 X6O 24 X6O N4 N4 N 0 1 N N N N N N -19.375 11.210 -20.984 4.817 2.090 0.858 N4 X6O 25 X6O O4 O4 O 0 1 N N N N N N -18.709 13.520 -22.201 4.589 0.811 -2.560 O4 X6O 26 X6O N5 N5 N 0 1 N N N N N N -16.713 9.270 -27.807 4.456 -3.832 1.065 N5 X6O 27 X6O O5 O5 O 0 1 N N N N N N -17.716 10.146 -22.010 4.649 3.008 -1.154 O5 X6O 28 X6O O6 O6 O 0 1 N N N N N N -15.302 10.727 -26.872 3.860 -1.741 1.300 O6 X6O 29 X6O C9 C19 C 0 1 N N N N N N -19.169 15.234 -28.094 -2.345 0.147 -0.473 C9 X6O 30 X6O C11 C20 C 0 1 N N N N N N -20.626 14.141 -29.943 -2.969 -1.512 1.262 C11 X6O 31 X6O C12 C21 C 0 1 N N N N N N -19.610 13.123 -30.465 -4.110 -2.009 2.151 C12 X6O 32 X6O C14 C22 C 0 1 N N N N N N -21.562 14.514 -31.101 -2.569 -2.616 0.281 C14 X6O 33 X6O C16 C23 C 0 1 N N N N N N -18.573 17.935 -31.862 -7.098 -0.858 -0.456 C16 X6O 34 X6O C18 C24 C 0 1 N N R N N N -17.970 12.406 -22.653 4.600 0.649 -1.140 C18 X6O 35 X6O C19 C25 C 0 1 N N N N N N -18.371 11.173 -21.855 4.691 2.000 -0.480 C19 X6O 36 X6O C23 C26 C 0 1 N N N N N N -17.239 11.272 -24.924 3.221 -1.423 -1.366 C23 X6O 37 X6O C25 C27 C 0 1 N N N N N N -18.947 10.323 -26.591 4.419 -3.585 -1.728 C25 X6O 38 X6O C27 C28 C 0 1 N N N N N N -18.011 8.776 -28.267 4.852 -4.992 0.277 C27 X6O 39 X6O F1 F1 F 0 1 N N N N N N -17.391 17.398 -31.938 -7.030 -2.184 -0.897 F1 X6O 40 X6O F2 F2 F 0 1 N N N N N N -18.339 19.175 -31.531 -8.217 -0.697 0.368 F2 X6O 41 X6O F3 F3 F 0 1 N N N N N N -19.015 17.891 -33.086 -7.204 -0.004 -1.559 F3 X6O 42 X6O H1 H1 H 0 1 N N N N N N -17.235 14.034 -24.700 2.207 1.330 -1.870 H1 X6O 43 X6O H2 H2 H 0 1 N N N N N N -21.698 17.383 -24.920 -0.394 3.754 1.668 H2 X6O 44 X6O H3 H3 H 0 1 N N N N N N -17.793 19.197 -25.533 -3.454 3.893 -0.876 H3 X6O 45 X6O H4 H4 H 0 1 N N N N N N -18.189 17.849 -26.652 -2.467 3.007 -2.063 H4 X6O 46 X6O H5 H5 H 0 1 N N N N N N -19.174 19.351 -26.671 -2.864 2.257 -0.498 H5 X6O 47 X6O H6 H6 H 0 1 N N N N N N -20.373 18.449 -23.052 -0.595 5.687 0.299 H6 X6O 48 X6O H7 H7 H 0 1 N N N N N N -18.709 19.083 -23.292 -0.774 5.566 -1.468 H7 X6O 49 X6O H8 H8 H 0 1 N N N N N N -20.105 19.911 -24.060 -2.212 5.771 -0.440 H8 X6O 50 X6O H9 H9 H 0 1 N N N N N N -20.589 17.678 -27.563 -2.280 1.770 1.706 H9 X6O 51 X6O H10 H10 H 0 1 N N N N N N -21.699 16.329 -27.144 -0.587 1.217 1.886 H10 X6O 52 X6O H11 H11 H 0 1 N N N N N N -20.809 16.098 -29.112 -3.644 0.533 1.176 H11 X6O 53 X6O H12 H12 H 0 1 N N N N N N -20.730 13.290 -27.963 -2.071 -0.408 2.879 H12 X6O 54 X6O H13 H13 H 0 1 N N N N N N -22.150 14.289 -28.423 -1.393 -2.035 2.633 H13 X6O 55 X6O H14 H14 H 0 1 N N N N N N -21.945 12.645 -29.119 -0.981 -0.720 1.507 H14 X6O 56 X6O H15 H15 H 0 1 N N N N N N -19.222 11.827 -24.306 3.322 -0.174 0.386 H15 X6O 57 X6O H16 H16 H 0 1 N N N N N N -20.205 9.227 -20.767 5.517 0.241 1.727 H16 X6O 58 X6O H17 H17 H 0 1 N N N N N N -19.199 9.772 -19.382 3.932 0.841 2.382 H17 X6O 59 X6O H18 H18 H 0 1 N N N N N N -21.082 11.135 -18.620 5.332 2.282 3.786 H18 X6O 60 X6O H19 H19 H 0 1 N N N N N N -22.011 10.740 -20.105 6.722 2.181 2.619 H19 X6O 61 X6O H20 H20 H 0 1 N N N N N N -19.914 12.944 -19.781 3.971 3.559 2.196 H20 X6O 62 X6O H21 H21 H 0 1 N N N N N N -20.979 12.668 -21.201 5.573 4.019 1.470 H21 X6O 63 X6O H22 H22 H 0 1 N N N N N N -17.722 12.060 -26.856 5.326 -1.753 -1.049 H22 X6O 64 X6O H23 H23 H 0 1 N N N N N N -19.034 10.600 -28.723 5.544 -5.428 -1.714 H23 X6O 65 X6O H24 H24 H 0 1 N N N N N N -20.084 9.285 -28.094 6.370 -4.056 -0.933 H24 X6O 66 X6O H25 H25 H 0 1 N N N N N N -17.878 15.807 -25.823 -0.347 1.324 -1.888 H25 X6O 67 X6O H26 H26 H 0 1 N N N N N N -18.287 15.717 -30.649 -4.578 -0.882 -1.201 H26 X6O 68 X6O H27 H27 H 0 1 N N N N N N -19.741 16.219 -23.713 0.873 3.463 -0.689 H27 X6O 69 X6O H28 H28 H 0 1 N N N N N N -18.565 13.639 -21.270 3.849 1.339 -2.889 H28 X6O 70 X6O H29 H29 H 0 1 N N N N N N -15.916 8.724 -28.066 4.354 -3.946 2.023 H29 X6O 71 X6O H30 H30 H 0 1 N N N N N N -18.925 12.838 -29.653 -4.967 -2.272 1.531 H30 X6O 72 X6O H31 H31 H 0 1 N N N N N N -20.140 12.230 -30.828 -3.781 -2.887 2.707 H31 X6O 73 X6O H32 H32 H 0 1 N N N N N N -19.035 13.569 -31.290 -4.396 -1.222 2.850 H32 X6O 74 X6O H33 H33 H 0 1 N N N N N N -22.304 15.247 -30.752 -1.756 -2.262 -0.353 H33 X6O 75 X6O H34 H34 H 0 1 N N N N N N -20.974 14.951 -31.922 -2.240 -3.494 0.837 H34 X6O 76 X6O H35 H35 H 0 1 N N N N N N -22.079 13.612 -31.460 -3.425 -2.879 -0.339 H35 X6O 77 X6O H36 H36 H 0 1 N N N N N N -16.896 12.584 -22.493 5.460 0.045 -0.850 H36 X6O 78 X6O H37 H37 H 0 1 N N N N N N -17.241 10.292 -24.424 2.281 -1.900 -1.090 H37 X6O 79 X6O H38 H38 H 0 1 N N N N N N -16.228 11.704 -24.881 3.263 -1.303 -2.449 H38 X6O 80 X6O H39 H39 H 0 1 N N N N N N -19.773 11.020 -26.388 3.425 -4.033 -1.744 H39 X6O 81 X6O H40 H40 H 0 1 N N N N N N -18.991 9.486 -25.879 4.739 -3.363 -2.746 H40 X6O 82 X6O H41 H41 H 0 1 N N N N N N -18.245 7.839 -27.740 3.984 -5.632 0.117 H41 X6O 83 X6O H42 H42 H 0 1 N N N N N N -17.959 8.585 -29.349 5.614 -5.552 0.818 H42 X6O 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6O F3 C16 SING N N 1 X6O F1 C16 SING N N 2 X6O C16 F2 SING N N 3 X6O C16 C15 SING N N 4 X6O C14 C11 SING N N 5 X6O C15 O2 DOUB N N 6 X6O C15 N2 SING N N 7 X6O C12 C11 SING N N 8 X6O N2 C10 SING N N 9 X6O C11 C10 SING N N 10 X6O C11 C13 SING N N 11 X6O C10 C9 SING N N 12 X6O C27 C26 SING N N 13 X6O C27 N5 SING N N 14 X6O C9 O3 DOUB N N 15 X6O C9 N1 SING N N 16 X6O C26 C25 SING N N 17 X6O N5 C28 SING N N 18 X6O C28 O6 DOUB N N 19 X6O C28 C24 SING N N 20 X6O N1 C8 SING N N 21 X6O N1 C2 SING N N 22 X6O C8 C4 SING N N 23 X6O C25 C24 SING N N 24 X6O C24 C23 SING N N 25 X6O C6 C5 SING N N 26 X6O C2 C1 SING N N 27 X6O C2 C3 SING N N 28 X6O O1 C1 DOUB N N 29 X6O C4 C5 SING N N 30 X6O C4 C3 SING N N 31 X6O C1 N3 SING N N 32 X6O C5 C3 SING N N 33 X6O C5 C7 SING N N 34 X6O C23 C17 SING N N 35 X6O N3 C17 SING N N 36 X6O C17 C18 SING N N 37 X6O C18 O4 SING N N 38 X6O C18 C19 SING N N 39 X6O O5 C19 DOUB N N 40 X6O C19 N4 SING N N 41 X6O N4 C22 SING N N 42 X6O N4 C20 SING N N 43 X6O C22 C21 SING N N 44 X6O C20 C21 SING N N 45 X6O N3 H1 SING N N 46 X6O C4 H2 SING N N 47 X6O C6 H3 SING N N 48 X6O C6 H4 SING N N 49 X6O C6 H5 SING N N 50 X6O C7 H6 SING N N 51 X6O C7 H7 SING N N 52 X6O C7 H8 SING N N 53 X6O C8 H9 SING N N 54 X6O C8 H10 SING N N 55 X6O C10 H11 SING N N 56 X6O C13 H12 SING N N 57 X6O C13 H13 SING N N 58 X6O C13 H14 SING N N 59 X6O C17 H15 SING N N 60 X6O C20 H16 SING N N 61 X6O C20 H17 SING N N 62 X6O C21 H18 SING N N 63 X6O C21 H19 SING N N 64 X6O C22 H20 SING N N 65 X6O C22 H21 SING N N 66 X6O C24 H22 SING N N 67 X6O C26 H23 SING N N 68 X6O C26 H24 SING N N 69 X6O C2 H25 SING N N 70 X6O N2 H26 SING N N 71 X6O C3 H27 SING N N 72 X6O O4 H28 SING N N 73 X6O N5 H29 SING N N 74 X6O C12 H30 SING N N 75 X6O C12 H31 SING N N 76 X6O C12 H32 SING N N 77 X6O C14 H33 SING N N 78 X6O C14 H34 SING N N 79 X6O C14 H35 SING N N 80 X6O C18 H36 SING N N 81 X6O C23 H37 SING N N 82 X6O C23 H38 SING N N 83 X6O C25 H39 SING N N 84 X6O C25 H40 SING N N 85 X6O C27 H41 SING N N 86 X6O C27 H42 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6O SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCCNC3=O)C(O)C(=O)N3CCC3)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" X6O InChI InChI 1.06 "InChI=1S/C28H42F3N5O6/c1-26(2,3)20(34-25(42)28(29,30)31)24(41)36-13-15-17(27(15,4)5)18(36)22(39)33-16(12-14-8-6-9-32-21(14)38)19(37)23(40)35-10-7-11-35/h14-20,37H,6-13H2,1-5H3,(H,32,38)(H,33,39)(H,34,42)/t14-,15-,16-,17-,18-,19+,20+/m0/s1" X6O InChIKey InChI 1.06 IAIXUKUDGNIVRC-ZYRLFZHTSA-N X6O SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCCNC3=O)[C@@H](O)C(=O)N4CCC4)C2(C)C" X6O SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCCNC3=O)[CH](O)C(=O)N4CCC4)C2(C)C" X6O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCCNC3=O)[C@H](C(=O)N4CCC4)O)C" X6O SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCCNC3=O)C(C(=O)N4CCC4)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6O "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" X6O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-(azetidin-1-yl)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]butan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6O "Create component" 2022-11-02 RCSB X6O "Initial release" 2023-10-11 RCSB X6O "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X6O _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #