data_X6T # _chem_comp.id X6T _chem_comp.name "(1R,2S,5S)-N-{(2S,3R)-4-(3,3-dimethylazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H46 F3 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 629.711 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F02 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6T N1 N1 N 0 1 N N N N N N -19.752 15.746 -26.695 -1.519 0.927 -0.274 N1 X6T 1 X6T N3 N2 N 0 1 N N N N N N -18.211 13.416 -24.635 1.984 0.465 -1.381 N3 X6T 2 X6T C4 C1 C 0 1 N N S N N N -20.853 17.180 -25.182 -0.834 3.114 0.420 C4 X6T 3 X6T C5 C2 C 0 1 N N N N N N -19.618 17.901 -24.692 -1.419 3.660 -0.884 C5 X6T 4 X6T C6 C3 C 0 1 N N N N N N -18.662 18.446 -25.732 -2.726 3.042 -1.384 C6 X6T 5 X6T C7 C4 C 0 1 N N N N N N -19.737 18.802 -23.477 -1.249 5.155 -1.161 C7 X6T 6 X6T C8 C5 C 0 1 N N N N N N -20.933 16.616 -26.579 -1.359 1.759 0.942 C8 X6T 7 X6T C10 C6 C 0 1 N N S N N N -20.085 15.363 -29.073 -3.570 -0.236 0.473 C10 X6T 8 X6T C13 C7 C 0 1 N N N N N N -21.606 14.492 -30.818 -1.872 -0.974 2.150 C13 X6T 9 X6T C15 C8 C 0 1 N N N N N N -19.422 17.217 -30.517 -5.999 -0.420 0.419 C15 X6T 10 X6T C17 C9 C 0 1 N N S N N N -18.182 12.073 -24.078 3.131 -0.338 -0.949 C17 X6T 11 X6T C20 C10 C 0 1 N N N N N N -20.750 11.978 -21.239 4.933 3.112 1.146 C20 X6T 12 X6T C21 C11 C 0 1 N N N N N N -21.738 10.805 -20.998 4.380 2.270 2.310 C21 X6T 13 X6T C22 C12 C 0 1 N N N N N N -22.721 10.586 -22.141 2.861 2.359 2.469 C22 X6T 14 X6T C24 C13 C 0 1 N N N N N N -20.531 9.839 -20.968 4.849 1.040 1.511 C24 X6T 15 X6T C26 C14 C 0 1 N N S N N N -17.527 11.054 -26.343 4.129 -2.628 -0.946 C26 X6T 16 X6T C28 C15 C 0 1 N N N N N N -19.104 9.911 -27.981 5.075 -4.926 -0.908 C28 X6T 17 X6T C1 C16 C 0 1 N N N N N N -19.308 13.981 -25.131 0.880 0.532 -0.612 C1 X6T 18 X6T O1 O1 O 0 1 N N N N N N -20.351 13.368 -25.362 0.868 0.002 0.479 O1 X6T 19 X6T C2 C17 C 0 1 N N S N N N -19.107 15.459 -25.432 -0.341 1.264 -1.106 C2 X6T 20 X6T N2 N3 N 0 1 N N N N N N -19.193 16.016 -30.019 -4.818 -0.602 -0.203 N2 X6T 21 X6T O2 O2 O 0 1 N N N N N N -20.340 17.963 -30.263 -6.030 0.046 1.538 O2 X6T 22 X6T C3 C18 C 0 1 N N R N N N -19.777 16.419 -24.450 -0.163 2.788 -0.930 C3 X6T 23 X6T O3 O3 O 0 1 N N N N N N -18.163 14.643 -27.814 -2.544 -0.492 -1.637 O3 X6T 24 X6T N4 N4 N 0 1 N N N N N N -19.694 10.963 -21.431 4.752 1.904 0.318 N4 X6T 25 X6T O4 O4 O 0 1 N N N N N N -17.749 10.013 -21.965 4.533 2.613 -1.773 O4 X6T 26 X6T N5 N5 N 0 1 N N N N N N -16.705 9.379 -27.934 4.196 -3.960 1.168 N5 X6T 27 X6T O5 O5 O 0 1 N N N N N N -18.667 13.388 -22.070 4.358 0.284 -2.936 O5 X6T 28 X6T O6 O6 O 0 1 N N N N N N -15.222 10.643 -26.817 3.672 -1.838 1.203 O6 X6T 29 X6T C9 C19 C 0 1 N N N N N N -19.249 15.206 -27.803 -2.508 0.056 -0.555 C9 X6T 30 X6T C11 C20 C 0 1 N N N N N N -20.726 14.064 -29.636 -3.114 -1.394 1.362 C11 X6T 31 X6T C12 C21 C 0 1 N N N N N N -19.695 13.026 -30.099 -4.235 -1.762 2.336 C12 X6T 32 X6T C14 C22 C 0 1 N N N N N N -21.614 13.414 -28.578 -2.778 -2.606 0.490 C14 X6T 33 X6T C16 C23 C 0 1 N N N N N N -18.371 17.669 -31.516 -7.282 -0.796 -0.276 C16 X6T 34 X6T C18 C24 C 0 1 N N R N N N -17.941 12.265 -22.560 4.419 0.270 -1.509 C18 X6T 35 X6T C19 C25 C 0 1 N N N N N N -18.457 10.996 -21.920 4.572 1.680 -0.999 C19 X6T 36 X6T C23 C26 C 0 1 N N N N N N -22.462 10.837 -19.660 5.132 2.471 3.628 C23 X6T 37 X6T C25 C27 C 0 1 N N N N N N -17.169 11.222 -24.858 2.975 -1.769 -1.467 C25 X6T 38 X6T C27 C28 C 0 1 N N N N N N -18.913 10.421 -26.568 4.096 -3.995 -1.634 C27 X6T 39 X6T C29 C29 C 0 1 N N N N N N -18.036 8.883 -28.281 4.536 -5.205 0.495 C29 X6T 40 X6T C30 C30 C 0 1 N N N N N N -16.404 10.333 -27.053 3.989 -2.802 0.539 C30 X6T 41 X6T F1 F1 F 0 1 N N N N N N -18.408 16.925 -32.615 -7.266 -2.162 -0.579 F1 X6T 42 X6T F2 F2 F 0 1 N N N N N N -17.159 17.479 -31.018 -8.366 -0.517 0.563 F2 X6T 43 X6T F3 F3 F 0 1 N N N N N N -18.527 18.950 -31.760 -7.406 -0.058 -1.459 F3 X6T 44 X6T H1 H1 H 0 1 N N N N N N -17.361 13.943 -24.646 2.020 0.949 -2.221 H1 X6T 45 X6T H2 H2 H 0 1 N N N N N N -21.798 17.368 -24.651 -0.382 3.800 1.136 H2 X6T 46 X6T H3 H3 H 0 1 N N N N N N -17.817 18.941 -25.231 -3.529 3.774 -1.304 H3 X6T 47 X6T H4 H4 H 0 1 N N N N N N -18.287 17.620 -26.353 -2.610 2.742 -2.426 H4 X6T 48 X6T H5 H5 H 0 1 N N N N N N -19.188 19.173 -26.368 -2.969 2.168 -0.780 H5 X6T 49 X6T H6 H6 H 0 1 N N N N N N -20.441 18.358 -22.758 -0.580 5.589 -0.418 H6 X6T 50 X6T H7 H7 H 0 1 N N N N N N -18.750 18.911 -23.003 -0.827 5.295 -2.156 H7 X6T 51 X6T H8 H8 H 0 1 N N N N N N -20.105 19.791 -23.788 -2.220 5.647 -1.106 H8 X6T 52 X6T H9 H9 H 0 1 N N N N N N -20.896 17.422 -27.326 -2.319 1.890 1.441 H9 X6T 53 X6T H10 H10 H 0 1 N N N N N N -21.858 16.035 -26.711 -0.635 1.306 1.620 H10 X6T 54 X6T H11 H11 H 0 1 N N N N N N -20.908 16.055 -28.841 -3.736 0.650 1.087 H11 X6T 55 X6T H12 H12 H 0 1 N N N N N N -22.342 15.236 -30.478 -2.129 -0.158 2.826 H12 X6T 56 X6T H13 H13 H 0 1 N N N N N N -20.975 14.933 -31.604 -1.503 -1.821 2.728 H13 X6T 57 X6T H14 H14 H 0 1 N N N N N N -22.132 13.614 -31.220 -1.097 -0.642 1.458 H14 X6T 58 X6T H15 H15 H 0 1 N N N N N N -19.174 11.615 -24.203 3.177 -0.348 0.140 H15 X6T 59 X6T H16 H16 H 0 1 N N N N N N -20.600 12.637 -20.371 4.287 3.942 0.859 H16 X6T 60 X6T H17 H17 H 0 1 N N N N N N -20.969 12.587 -22.129 5.974 3.408 1.274 H17 X6T 61 X6T H18 H18 H 0 1 N N N N N N -23.384 9.743 -21.898 2.379 2.007 1.556 H18 X6T 62 X6T H19 H19 H 0 1 N N N N N N -23.322 11.495 -22.287 2.546 1.740 3.308 H19 X6T 63 X6T H20 H20 H 0 1 N N N N N N -22.166 10.362 -23.064 2.576 3.395 2.654 H20 X6T 64 X6T H21 H21 H 0 1 N N N N N N -20.600 8.998 -21.674 5.866 0.726 1.744 H21 X6T 65 X6T H22 H22 H 0 1 N N N N N N -20.274 9.458 -19.968 4.136 0.215 1.516 H22 X6T 66 X6T H23 H23 H 0 1 N N N N N N -17.574 12.067 -26.770 5.076 -2.135 -1.165 H23 X6T 67 X6T H24 H24 H 0 1 N N N N N N -19.020 10.748 -28.690 5.164 -5.863 -1.458 H24 X6T 68 X6T H25 H25 H 0 1 N N N N N N -20.098 9.449 -28.075 6.052 -4.448 -0.839 H25 X6T 69 X6T H26 H26 H 0 1 N N N N N N -18.031 15.681 -25.487 -0.532 1.020 -2.151 H26 X6T 70 X6T H27 H27 H 0 1 N N N N N N -18.366 15.532 -30.306 -4.793 -0.974 -1.098 H27 X6T 71 X6T H28 H28 H 0 1 N N N N N N -19.977 16.067 -23.427 0.789 3.232 -1.221 H28 X6T 72 X6T H29 H29 H 0 1 N N N N N N -15.935 8.955 -28.411 4.115 -3.974 2.134 H29 X6T 73 X6T H30 H30 H 0 1 N N N N N N -18.506 13.488 -21.139 3.621 0.799 -3.293 H30 X6T 74 X6T H31 H31 H 0 1 N N N N N N -19.069 12.725 -29.246 -4.474 -0.900 2.958 H31 X6T 75 X6T H32 H32 H 0 1 N N N N N N -20.217 12.145 -30.500 -5.120 -2.062 1.775 H32 X6T 76 X6T H33 H33 H 0 1 N N N N N N -19.060 13.464 -30.883 -3.910 -2.588 2.970 H33 X6T 77 X6T H34 H34 H 0 1 N N N N N N -20.997 13.101 -27.723 -2.453 -3.431 1.123 H34 X6T 78 X6T H35 H35 H 0 1 N N N N N N -22.370 14.137 -28.239 -3.663 -2.905 -0.072 H35 X6T 79 X6T H36 H36 H 0 1 N N N N N N -22.115 12.535 -29.010 -1.979 -2.343 -0.204 H36 X6T 80 X6T H37 H37 H 0 1 N N N N N N -16.863 12.372 -22.369 5.272 -0.327 -1.187 H37 X6T 81 X6T H38 H38 H 0 1 N N N N N N -21.733 10.996 -18.852 5.069 3.517 3.926 H38 X6T 82 X6T H39 H39 H 0 1 N N N N N N -23.195 11.657 -19.659 4.686 1.845 4.400 H39 X6T 83 X6T H40 H40 H 0 1 N N N N N N -22.982 9.881 -19.502 6.178 2.194 3.495 H40 X6T 84 X6T H41 H41 H 0 1 N N N N N N -17.122 10.225 -24.396 2.028 -2.181 -1.118 H41 X6T 85 X6T H42 H42 H 0 1 N N N N N N -16.183 11.704 -24.790 2.989 -1.764 -2.557 H42 X6T 86 X6T H43 H43 H 0 1 N N N N N N -19.683 11.179 -26.361 3.089 -4.408 -1.581 H43 X6T 87 X6T H44 H44 H 0 1 N N N N N N -19.031 9.578 -25.871 4.395 -3.888 -2.676 H44 X6T 88 X6T H45 H45 H 0 1 N N N N N N -18.242 7.973 -27.699 3.645 -5.828 0.422 H45 X6T 89 X6T H46 H46 H 0 1 N N N N N N -18.060 8.645 -29.355 5.294 -5.733 1.074 H46 X6T 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6T F1 C16 SING N N 1 X6T F3 C16 SING N N 2 X6T C16 F2 SING N N 3 X6T C16 C15 SING N N 4 X6T C13 C11 SING N N 5 X6T C15 O2 DOUB N N 6 X6T C15 N2 SING N N 7 X6T C12 C11 SING N N 8 X6T N2 C10 SING N N 9 X6T C11 C10 SING N N 10 X6T C11 C14 SING N N 11 X6T C10 C9 SING N N 12 X6T C29 C28 SING N N 13 X6T C29 N5 SING N N 14 X6T C28 C27 SING N N 15 X6T N5 C30 SING N N 16 X6T O3 C9 DOUB N N 17 X6T C9 N1 SING N N 18 X6T C30 O6 DOUB N N 19 X6T C30 C26 SING N N 20 X6T N1 C8 SING N N 21 X6T N1 C2 SING N N 22 X6T C8 C4 SING N N 23 X6T C27 C26 SING N N 24 X6T C26 C25 SING N N 25 X6T C6 C5 SING N N 26 X6T C2 C1 SING N N 27 X6T C2 C3 SING N N 28 X6T O1 C1 DOUB N N 29 X6T C4 C5 SING N N 30 X6T C4 C3 SING N N 31 X6T C1 N3 SING N N 32 X6T C25 C17 SING N N 33 X6T C5 C3 SING N N 34 X6T C5 C7 SING N N 35 X6T N3 C17 SING N N 36 X6T C17 C18 SING N N 37 X6T C18 O5 SING N N 38 X6T C18 C19 SING N N 39 X6T C22 C21 SING N N 40 X6T O4 C19 DOUB N N 41 X6T C19 N4 SING N N 42 X6T N4 C20 SING N N 43 X6T N4 C24 SING N N 44 X6T C20 C21 SING N N 45 X6T C21 C24 SING N N 46 X6T C21 C23 SING N N 47 X6T N3 H1 SING N N 48 X6T C4 H2 SING N N 49 X6T C6 H3 SING N N 50 X6T C6 H4 SING N N 51 X6T C6 H5 SING N N 52 X6T C7 H6 SING N N 53 X6T C7 H7 SING N N 54 X6T C7 H8 SING N N 55 X6T C8 H9 SING N N 56 X6T C8 H10 SING N N 57 X6T C10 H11 SING N N 58 X6T C13 H12 SING N N 59 X6T C13 H13 SING N N 60 X6T C13 H14 SING N N 61 X6T C17 H15 SING N N 62 X6T C20 H16 SING N N 63 X6T C20 H17 SING N N 64 X6T C22 H18 SING N N 65 X6T C22 H19 SING N N 66 X6T C22 H20 SING N N 67 X6T C24 H21 SING N N 68 X6T C24 H22 SING N N 69 X6T C26 H23 SING N N 70 X6T C28 H24 SING N N 71 X6T C28 H25 SING N N 72 X6T C2 H26 SING N N 73 X6T N2 H27 SING N N 74 X6T C3 H28 SING N N 75 X6T N5 H29 SING N N 76 X6T O5 H30 SING N N 77 X6T C12 H31 SING N N 78 X6T C12 H32 SING N N 79 X6T C12 H33 SING N N 80 X6T C14 H34 SING N N 81 X6T C14 H35 SING N N 82 X6T C14 H36 SING N N 83 X6T C18 H37 SING N N 84 X6T C23 H38 SING N N 85 X6T C23 H39 SING N N 86 X6T C23 H40 SING N N 87 X6T C25 H41 SING N N 88 X6T C25 H42 SING N N 89 X6T C27 H43 SING N N 90 X6T C27 H44 SING N N 91 X6T C29 H45 SING N N 92 X6T C29 H46 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6T SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCCNC3=O)C(O)C(=O)N3CC(C)(C)C3)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" X6T InChI InChI 1.06 "InChI=1S/C30H46F3N5O6/c1-27(2,3)21(36-26(44)30(31,32)33)25(43)38-12-16-18(29(16,6)7)19(38)23(41)35-17(11-15-9-8-10-34-22(15)40)20(39)24(42)37-13-28(4,5)14-37/h15-21,39H,8-14H2,1-7H3,(H,34,40)(H,35,41)(H,36,44)/t15-,16-,17-,18-,19-,20+,21+/m0/s1" X6T InChIKey InChI 1.06 KOJLJTKYOSKMNV-YTNBPZCUSA-N X6T SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCCNC3=O)[C@@H](O)C(=O)N4CC(C)(C)C4)C2(C)C" X6T SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCCNC3=O)[CH](O)C(=O)N4CC(C)(C)C4)C2(C)C" X6T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CN(C1)C(=O)[C@@H]([C@H](C[C@@H]2CCCNC2=O)NC(=O)[C@@H]3[C@@H]4[C@@H](C4(C)C)CN3C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)O)C" X6T SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CN(C1)C(=O)C(C(CC2CCCNC2=O)NC(=O)C3C4C(C4(C)C)CN3C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6T "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(2S,3R)-4-(3,3-dimethylazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" X6T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-(3,3-dimethylazetidin-1-yl)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]butan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6T "Create component" 2022-11-02 RCSB X6T "Initial release" 2023-10-11 RCSB X6T "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X6T _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #