data_X6X # _chem_comp.id X6X _chem_comp.name 2-amino-2-deoxy-alpha-D-galactopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-D-galactosamine; 2-amino-2-deoxy-alpha-D-galactose; 2-amino-2-deoxy-D-galactose; 2-amino-2-deoxy-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-06-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5BR1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 X6X alpha-D-galactosamine PDB ? 2 X6X 2-amino-2-deoxy-alpha-D-galactose PDB ? 3 X6X 2-amino-2-deoxy-D-galactose PDB ? 4 X6X 2-amino-2-deoxy-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6X O4 O4 O 0 1 N N N -9.792 0.908 13.782 -0.263 1.924 -0.858 O4 X6X 1 X6X C4 C4 C 0 1 N N R -8.636 1.049 12.990 -0.203 1.219 0.383 C4 X6X 2 X6X C3 C3 C 0 1 N N R -8.160 -0.363 12.608 1.213 0.674 0.595 C3 X6X 3 X6X O3 O3 O 0 1 N N N -9.290 -1.069 11.952 2.152 1.750 0.548 O3 X6X 4 X6X C2 C2 C 0 1 N N R -7.660 -1.130 13.873 1.532 -0.332 -0.516 C2 X6X 5 X6X N2 N2 N 0 1 N N N -7.081 -2.442 13.514 2.859 -0.917 -0.282 N2 X6X 6 X6X C1 C1 C 0 1 N N S -6.579 -0.286 14.658 0.476 -1.440 -0.508 C1 X6X 7 X6X O1 O1 O 0 1 N Y N -5.462 -0.097 13.879 0.527 -2.139 0.737 O1 X6X 8 X6X O5 O O 0 1 N N N -7.080 1.010 14.930 -0.820 -0.863 -0.678 O5 X6X 9 X6X C5 C5 C 0 1 N N R -7.562 1.797 13.813 -1.192 0.051 0.356 C5 X6X 10 X6X C6 C6 C 0 1 N N N -8.239 2.988 14.518 -2.601 0.582 0.085 C6 X6X 11 X6X O6 O6 O 0 1 N N N -8.331 4.074 13.602 -3.540 -0.492 0.175 O6 X6X 12 X6X HO4 H1 H 0 1 N Y N -10.110 1.767 14.034 -1.134 2.293 -1.059 HO4 X6X 13 X6X H4 H2 H 0 1 N N N -8.851 1.619 12.074 -0.460 1.894 1.199 H4 X6X 14 X6X H3 H3 H 0 1 N N N -7.323 -0.275 11.900 1.272 0.178 1.564 H3 X6X 15 X6X HO3 H4 H 0 1 N Y N -9.017 -1.945 11.707 3.070 1.477 0.675 HO3 X6X 16 X6X H2 H5 H 0 1 N N N -8.520 -1.285 14.542 1.521 0.175 -1.481 H2 X6X 17 X6X HN21 H6 H 0 0 N N N -6.771 -2.908 14.343 3.092 -1.584 -1.002 HN21 X6X 18 X6X HN22 H7 H 0 0 N Y N -7.775 -2.999 13.059 3.564 -0.199 -0.213 HN22 X6X 19 X6X H1 H9 H 0 1 N N N -6.334 -0.814 15.592 0.673 -2.136 -1.324 H1 X6X 20 X6X HO1 H10 H 0 1 N Y N -4.821 0.411 14.362 -0.117 -2.857 0.812 HO1 X6X 21 X6X H5 H11 H 0 1 N N N -6.744 2.141 13.164 -1.175 -0.463 1.317 H5 X6X 22 X6X H61 H12 H 0 1 N N N -7.640 3.290 15.390 -2.850 1.344 0.823 H61 X6X 23 X6X H62 H13 H 0 1 N N N -9.247 2.697 14.848 -2.640 1.016 -0.914 H62 X6X 24 X6X HO6 H14 H 0 1 N Y N -8.748 4.814 14.028 -4.456 -0.228 0.014 HO6 X6X 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6X O3 C3 SING N N 1 X6X C3 C4 SING N N 2 X6X C3 C2 SING N N 3 X6X C4 O4 SING N N 4 X6X C4 C5 SING N N 5 X6X N2 C2 SING N N 6 X6X O6 C6 SING N N 7 X6X C5 C6 SING N N 8 X6X C5 O5 SING N N 9 X6X C2 C1 SING N N 10 X6X O1 C1 SING N N 11 X6X C1 O5 SING N N 12 X6X O4 HO4 SING N N 13 X6X C4 H4 SING N N 14 X6X C3 H3 SING N N 15 X6X O3 HO3 SING N N 16 X6X C2 H2 SING N N 17 X6X N2 HN21 SING N N 18 X6X N2 HN22 SING N N 19 X6X C1 H1 SING N N 20 X6X O1 HO1 SING N N 21 X6X C5 H5 SING N N 22 X6X C6 H61 SING N N 23 X6X C6 H62 SING N N 24 X6X O6 HO6 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6X SMILES ACDLabs 12.01 "OC1C(OC(C(C1O)N)O)CO" X6X InChI InChI 1.03 "InChI=1S/C6H13NO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1,7H2/t2-,3-,4+,5-,6+/m1/s1" X6X InChIKey InChI 1.03 MSWZFWKMSRAUBD-DVKNGEFBSA-N X6X SMILES_CANONICAL CACTVS 3.385 "N[C@H]1[C@@H](O)O[C@H](CO)[C@H](O)[C@@H]1O" X6X SMILES CACTVS 3.385 "N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O" X6X SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)O" X6X SMILES "OpenEye OEToolkits" 1.9.2 "C(C1C(C(C(C(O1)O)N)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6X "SYSTEMATIC NAME" ACDLabs 12.01 2-amino-2-deoxy-alpha-D-galactopyranose X6X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3R,4R,5R,6R)-3-azanyl-6-(hydroxymethyl)oxane-2,4,5-triol" X6X "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalpNa X6X "COMMON NAME" GMML 1.0 a-D-galactopyranosamine X6X "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GalpN X6X "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 GalN # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support X6X "CARBOHYDRATE ISOMER" D PDB ? X6X "CARBOHYDRATE RING" pyranose PDB ? X6X "CARBOHYDRATE ANOMER" alpha PDB ? X6X "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6X "Create component" 2015-06-03 RCSB X6X "Initial release" 2015-06-10 RCSB X6X "Other modification" 2019-08-12 RCSB X6X "Other modification" 2019-12-19 RCSB X6X "Other modification" 2020-07-03 RCSB X6X "Modify synonyms" 2020-07-17 RCSB X6X "Modify atom id" 2020-07-17 RCSB X6X "Modify component atom id" 2020-07-17 RCSB ##