data_X6Y # _chem_comp.id X6Y _chem_comp.name 2-O-sulfo-alpha-L-fucopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O8 S" _chem_comp.mon_nstd_parent_comp_id FUC _chem_comp.pdbx_synonyms 6-deoxy-2-O-sulfo-alpha-L-galactopyranose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-01 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.220 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6Y C5 C1 C 0 1 N N S 6.721 -10.131 3.236 -2.786 0.562 0.145 C5 X6Y 1 X6Y C6 C2 C 0 1 N N N 7.445 -9.871 4.567 -4.135 0.647 -0.573 C6 X6Y 2 X6Y C2 C3 C 0 1 N N S 4.424 -10.714 1.575 0.022 -0.103 0.092 C2 X6Y 3 X6Y C4 C4 C 0 1 N N S 6.354 -11.620 2.987 -2.339 -0.901 0.218 C4 X6Y 4 X6Y C3 C5 C 0 1 N N R 5.510 -11.763 1.696 -0.961 -0.972 0.883 C3 X6Y 5 X6Y C1 C6 C 0 1 N N R 4.867 -9.291 1.970 -0.517 1.329 0.024 C1 X6Y 6 X6Y O5 O1 O 0 1 N N N 5.553 -9.295 3.196 -1.814 1.321 -0.577 O5 X6Y 7 X6Y O4 O2 O 0 1 N N N 5.720 -12.246 4.101 -2.260 -1.443 -1.102 O4 X6Y 8 X6Y O1 O3 O 0 1 N N N 5.640 -8.754 0.974 -0.607 1.868 1.344 O1 X6Y 9 X6Y O3 O4 O 0 1 N N N 4.958 -13.075 1.482 -0.503 -2.326 0.890 O3 X6Y 10 X6Y S1 S1 S 0 1 N N N 2.069 -10.896 0.371 2.478 -0.055 -0.208 S1 X6Y 11 X6Y O6 O5 O 0 1 N N N 1.848 -12.224 0.942 3.639 -0.265 0.584 O6 X6Y 12 X6Y O7 O6 O 0 1 N N N 1.623 -9.790 1.222 2.571 1.369 -0.738 O7 X6Y 13 X6Y O8 O7 O 0 1 N N N 1.674 -10.771 -1.033 2.135 -0.874 -1.317 O8 X6Y 14 X6Y O2 O8 O 0 1 N N N 3.719 -10.739 0.330 1.293 -0.104 0.745 O2 X6Y 15 X6Y H5 H1 H 0 1 N N N 7.400 -9.824 2.427 -2.885 0.962 1.153 H5 X6Y 16 X6Y H61 H2 H 0 1 N N N 7.666 -8.798 4.661 -4.876 0.068 -0.023 H6 X6Y 17 X6Y H63 H3 H 0 1 N N N 6.802 -10.188 5.402 -4.453 1.689 -0.625 H8 X6Y 18 X6Y H62 H4 H 0 1 N N N 8.385 -10.442 4.591 -4.036 0.246 -1.582 H7 X6Y 19 X6Y H2 H5 H 0 1 N N N 3.683 -10.991 2.339 0.129 -0.500 -0.917 H2 X6Y 20 X6Y H4 H6 H 0 1 N N N 7.302 -12.146 2.799 -3.058 -1.473 0.804 H4 X6Y 21 X6Y H3 H7 H 0 1 N N N 6.206 -11.573 0.866 -1.031 -0.605 1.907 H3 X6Y 22 X6Y H1 H8 H 0 1 N N N 3.953 -8.690 2.081 0.157 1.943 -0.574 H1 X6Y 23 X6Y HO4 H9 H 0 1 N N N 6.261 -12.141 4.874 -3.098 -1.425 -1.585 HO4 X6Y 24 X6Y HO1 H10 H 0 1 N N N 5.911 -7.878 1.221 -0.942 2.774 1.377 HO1 X6Y 25 X6Y HO3 H11 H 0 1 N N N 5.646 -13.725 1.560 -1.078 -2.934 1.374 H9 X6Y 26 X6Y H10 H12 H 0 1 N N N 1.139 -9.162 0.698 3.299 1.511 -1.359 H10 X6Y 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6Y O8 S1 DOUB N N 1 X6Y O2 S1 SING N N 2 X6Y O2 C2 SING N N 3 X6Y S1 O6 DOUB N N 4 X6Y S1 O7 SING N N 5 X6Y O1 C1 SING N N 6 X6Y O3 C3 SING N N 7 X6Y C2 C3 SING N N 8 X6Y C2 C1 SING N N 9 X6Y C3 C4 SING N N 10 X6Y C1 O5 SING N N 11 X6Y C4 C5 SING N N 12 X6Y C4 O4 SING N N 13 X6Y O5 C5 SING N N 14 X6Y C5 C6 SING N N 15 X6Y C5 H5 SING N N 16 X6Y C6 H61 SING N N 17 X6Y C6 H63 SING N N 18 X6Y C6 H62 SING N N 19 X6Y C2 H2 SING N N 20 X6Y C4 H4 SING N N 21 X6Y C3 H3 SING N N 22 X6Y C1 H1 SING N N 23 X6Y O4 HO4 SING N N 24 X6Y O1 HO1 SING N N 25 X6Y O3 HO3 SING N N 26 X6Y O7 H10 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6Y SMILES ACDLabs 12.01 "C1(C)C(O)C(C(C(O1)O)OS(=O)(O)=O)O" X6Y InChI InChI 1.03 "InChI=1S/C6H12O8S/c1-2-3(7)4(8)5(6(9)13-2)14-15(10,11)12/h2-9H,1H3,(H,10,11,12)/t2-,3+,4+,5-,6+/m0/s1" X6Y InChIKey InChI 1.03 CRKVWMQHXZHLCV-SXUWKVJYSA-N X6Y SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O)[C@@H](O[S](O)(=O)=O)[C@H](O)[C@@H]1O" X6Y SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O)[CH]1O" X6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)OS(=O)(=O)O)O)O" X6Y SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)OS(=O)(=O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6Y "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-2-O-sulfo-alpha-L-galactopyranose X6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-methyl-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen sulfate" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support X6Y "CARBOHYDRATE ISOMER" L PDB ? X6Y "CARBOHYDRATE RING" pyranose PDB ? X6Y "CARBOHYDRATE ANOMER" alpha PDB ? X6Y "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X6Y _pdbx_chem_comp_synonyms.name 6-deoxy-2-O-sulfo-alpha-L-galactopyranose _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_related.comp_id X6Y _pdbx_chem_comp_related.related_comp_id FUC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 X6Y C5 FUC C5 "Carbohydrate core" 2 X6Y C6 FUC C6 "Carbohydrate core" 3 X6Y C2 FUC C2 "Carbohydrate core" 4 X6Y C4 FUC C4 "Carbohydrate core" 5 X6Y C3 FUC C3 "Carbohydrate core" 6 X6Y C1 FUC C1 "Carbohydrate core" 7 X6Y O5 FUC O5 "Carbohydrate core" 8 X6Y O4 FUC O4 "Carbohydrate core" 9 X6Y O1 FUC O1 "Carbohydrate core" 10 X6Y O3 FUC O3 "Carbohydrate core" 11 X6Y O2 FUC O2 "Carbohydrate core" 12 X6Y H5 FUC H5 "Carbohydrate core" 13 X6Y H61 FUC H61 "Carbohydrate core" 14 X6Y H63 FUC H63 "Carbohydrate core" 15 X6Y H62 FUC H62 "Carbohydrate core" 16 X6Y H2 FUC H2 "Carbohydrate core" 17 X6Y H4 FUC H4 "Carbohydrate core" 18 X6Y H3 FUC H3 "Carbohydrate core" 19 X6Y H1 FUC H1 "Carbohydrate core" 20 X6Y HO4 FUC HO4 "Carbohydrate core" 21 X6Y HO1 FUC HO1 "Carbohydrate core" 22 X6Y HO3 FUC HO3 "Carbohydrate core" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6Y "Create component" 2020-12-01 RCSB X6Y "Initial release" 2020-12-16 RCSB ##