data_X6Z
#
_chem_comp.id X6Z
_chem_comp.name "[(2~{R},3~{S},4~{S},5~{S})-5-methoxy-3,4,6-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type "D-saccharide, alpha linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C7 H15 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-10-24
_chem_comp.pdbx_modified_date 2024-10-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 274.162
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X6Z
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8WQT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X6Z O47 O1 O 0 1 N N N N N N 187.760 177.587 159.699 3.212 0.733 1.213 O47 X6Z 1
X6Z O50 O2 O 0 1 N N N N N N 187.897 182.071 156.672 -2.035 0.197 -0.293 O50 X6Z 2
X6Z C1 C1 C 0 1 N N S N N N 185.719 178.920 159.576 1.943 1.409 -0.732 C1 X6Z 3
X6Z C2 C2 C 0 1 N N S N N N 187.009 178.617 160.319 3.074 0.528 -0.195 C2 X6Z 4
X6Z C3 C3 C 0 1 N N S N N N 187.870 179.861 160.370 2.740 -0.942 -0.468 C3 X6Z 5
X6Z C4 C4 C 0 1 N N S N N N 188.127 180.374 158.970 1.389 -1.274 0.174 C4 X6Z 6
X6Z C5 C5 C 0 1 N N R N N N 186.808 180.612 158.253 0.323 -0.324 -0.378 C5 X6Z 7
X6Z C6 C6 C 0 1 N N N N N N 186.991 180.987 156.802 -1.017 -0.610 0.303 C6 X6Z 8
X6Z C48 C7 C 0 1 N N N N N N 187.073 176.344 159.632 4.122 1.777 1.562 C48 X6Z 9
X6Z O3 O3 O 0 1 N N N N N N 189.104 179.572 161.023 3.755 -1.776 0.095 O3 X6Z 10
X6Z O4 O4 O 0 1 N N N N N N 188.864 181.589 159.019 1.033 -2.623 -0.137 O4 X6Z 11
X6Z O5 O5 O 0 1 N N N N N N 186.031 179.398 158.270 0.711 1.027 -0.117 O5 X6Z 12
X6Z O58 O6 O 0 1 N N N N N N 186.803 182.856 154.490 -4.193 -1.297 -0.141 O58 X6Z 13
X6Z O60 O7 O 0 1 N N N N N N 188.574 181.012 154.442 -3.653 0.415 1.633 O60 X6Z 14
X6Z O62 O8 O 0 1 N N N N N N 189.263 183.429 154.973 -4.409 1.280 -0.615 O62 X6Z 15
X6Z P51 P1 P 0 1 N N N N N N 188.136 182.347 155.144 -3.574 0.154 0.178 P51 X6Z 16
X6Z H1 H1 H 0 1 N N N N N N 185.143 177.986 159.495 2.156 2.453 -0.502 H1 X6Z 17
X6Z H3 H3 H 0 1 N N N N N N 186.756 178.325 161.349 4.008 0.789 -0.693 H3 X6Z 18
X6Z H4 H4 H 0 1 N N N N N N 187.328 180.637 160.931 2.685 -1.109 -1.544 H4 X6Z 19
X6Z H5 H5 H 0 1 N N N N N N 188.695 179.613 158.415 1.460 -1.156 1.255 H5 X6Z 20
X6Z H6 H6 H 0 1 N N N N N N 186.262 181.417 158.767 0.225 -0.473 -1.453 H6 X6Z 21
X6Z H7 H7 H 0 1 N N N N N N 186.018 181.278 156.379 -0.942 -0.376 1.365 H7 X6Z 22
X6Z H8 H8 H 0 1 N N N N N N 187.385 180.120 156.252 -1.269 -1.663 0.179 H8 X6Z 23
X6Z H9 H9 H 0 1 N N N N N N 187.714 175.596 159.141 5.113 1.541 1.173 H9 X6Z 24
X6Z H10 H10 H 0 1 N N N N N N 186.828 176.005 160.649 3.779 2.718 1.132 H10 X6Z 25
X6Z H11 H11 H 0 1 N N N N N N 186.146 176.468 159.054 4.171 1.869 2.647 H11 X6Z 26
X6Z H12 H12 H 0 1 N N N N N N 188.931 179.251 161.900 4.639 -1.614 -0.261 H12 X6Z 27
X6Z H13 H13 H 0 1 N N N N N N 189.689 181.442 159.467 1.668 -3.280 0.179 H13 X6Z 28
X6Z H14 H14 H 0 1 N N N N N N 186.535 182.254 153.806 -4.174 -1.535 -1.078 H14 X6Z 29
X6Z H15 H15 H 0 1 N N N N N N 189.985 183.059 154.479 -5.347 1.312 -0.381 H15 X6Z 30
X6Z OXT OXT O 0 1 N Y N N N N 184.971 179.874 160.320 1.842 1.244 -2.148 O1 X6Z 31
X6Z HXT HXT H 0 1 N Y N N N N 184.781 179.525 161.183 1.144 1.773 -2.556 H2 X6Z 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X6Z O60 P51 DOUB N N 1
X6Z O58 P51 SING N N 2
X6Z O62 P51 SING N N 3
X6Z P51 O50 SING N N 4
X6Z O50 C6 SING N N 5
X6Z C6 C5 SING N N 6
X6Z C5 O5 SING N N 7
X6Z C5 C4 SING N N 8
X6Z O5 C1 SING N N 9
X6Z C4 O4 SING N N 10
X6Z C4 C3 SING N N 11
X6Z C1 C2 SING N N 12
X6Z C48 O47 SING N N 13
X6Z O47 C2 SING N N 14
X6Z C2 C3 SING N N 15
X6Z C3 O3 SING N N 16
X6Z C1 H1 SING N N 17
X6Z C2 H3 SING N N 18
X6Z C3 H4 SING N N 19
X6Z C4 H5 SING N N 20
X6Z C5 H6 SING N N 21
X6Z C6 H7 SING N N 22
X6Z C6 H8 SING N N 23
X6Z C48 H9 SING N N 24
X6Z C48 H10 SING N N 25
X6Z C48 H11 SING N N 26
X6Z O3 H12 SING N N 27
X6Z O4 H13 SING N N 28
X6Z O58 H14 SING N N 29
X6Z O62 H15 SING N N 30
X6Z C1 OXT SING N N 31
X6Z OXT HXT SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X6Z InChI InChI 1.06 "InChI=1S/C7H15O9P/c1-14-6-5(9)4(8)3(16-7(6)10)2-15-17(11,12)13/h3-10H,2H2,1H3,(H2,11,12,13)/t3-,4-,5+,6+,7+/m1/s1"
X6Z InChIKey InChI 1.06 KJZYYYMWKHTJAM-VEIUFWFVSA-N
X6Z SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@@H](O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O"
X6Z SMILES CACTVS 3.385 "CO[CH]1[CH](O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O"
X6Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@H]([C@@H]([C@H](OC1O)COP(=O)(O)O)O)O"
X6Z SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(OC1O)COP(=O)(O)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id X6Z
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S},5~{S})-5-methoxy-3,4,6-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X6Z "Create component" 2023-10-24 PDBJ
X6Z "Initial release" 2024-10-16 RCSB
#