data_X70 # _chem_comp.id X70 _chem_comp.name "(1R,2S,5S)-N-{(2S,3R)-4-(3,3-difluoroazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H40 F5 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 637.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X70 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EZZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X70 N1 N1 N 0 1 N N N N N N -19.646 15.695 -26.603 -1.565 0.906 -0.315 N1 X70 1 X70 N3 N2 N 0 1 N N N N N N -18.015 13.403 -24.403 1.924 0.386 -1.439 N3 X70 2 X70 C4 C1 C 0 1 N N S N N N -20.791 17.064 -25.053 -0.855 3.103 0.320 C4 X70 3 X70 C5 C2 C 0 1 N N N N N N -19.620 17.916 -24.644 -1.446 3.623 -0.992 C5 X70 4 X70 C6 C3 C 0 1 N N N N N N -18.781 18.520 -25.750 -2.762 3.004 -1.467 C6 X70 5 X70 C7 C4 C 0 1 N N N N N N -19.776 18.826 -23.434 -1.265 5.109 -1.306 C7 X70 6 X70 C8 C5 C 0 1 N N N N N N -20.832 16.556 -26.473 -1.388 1.765 0.878 C8 X70 7 X70 C10 C6 C 0 1 N N S N N N -19.987 15.358 -29.011 -3.620 -0.220 0.476 C10 X70 8 X70 C13 C7 C 0 1 N N N N N N -21.404 13.364 -28.517 -1.914 -0.933 2.156 C13 X70 9 X70 C15 C8 C 0 1 N N N N N N -19.424 17.181 -30.496 -6.051 -0.384 0.446 C15 X70 10 X70 C17 C9 C 0 1 N N S N N N -18.081 12.034 -23.897 3.067 -0.417 -0.998 C17 X70 11 X70 C20 C10 C 0 1 N N N N N N -20.350 11.931 -20.385 4.912 3.063 1.010 C20 X70 12 X70 C21 C11 C 0 1 N N N N N N -21.278 10.750 -20.049 4.361 2.250 2.196 C21 X70 13 X70 C22 C12 C 0 1 N N N N N N -20.039 9.844 -20.123 4.813 1.000 1.420 C22 X70 14 X70 C24 C13 C 0 1 N N S N N N -17.513 10.981 -26.156 4.046 -2.715 -0.951 C24 X70 15 X70 C26 C14 C 0 1 N N N N N N -18.975 9.783 -27.818 4.976 -5.019 -0.874 C26 X70 16 X70 C28 C15 C 0 1 N N N N N N -16.374 10.323 -26.885 3.912 -2.860 0.538 C28 X70 17 X70 C1 C16 C 0 1 N N N N N N -19.070 14.014 -24.941 0.827 0.481 -0.663 C1 X70 18 X70 O1 O1 O 0 1 N N N N N N -20.105 13.412 -25.162 0.820 -0.022 0.440 O1 X70 19 X70 C2 C17 C 0 1 N N S N N N -18.948 15.470 -25.345 -0.391 1.213 -1.166 C2 X70 20 X70 N2 N3 N 0 1 N N N N N N -19.090 16.040 -29.931 -4.876 -0.591 -0.181 N2 X70 21 X70 O2 O2 O 0 1 N N N N N N -20.438 17.815 -30.287 -6.069 0.109 1.554 O2 X70 22 X70 C3 C18 C 0 1 N N R N N N -19.607 16.429 -24.359 -0.198 2.738 -1.028 C3 X70 23 X70 O3 O3 O 0 1 N N N N N N -18.197 14.471 -27.749 -2.615 -0.535 -1.636 O3 X70 24 X70 N4 N4 N 0 1 N N N N N N -19.377 10.929 -20.875 4.716 1.838 0.210 N4 X70 25 X70 O4 O4 O 0 1 N N N N N N -18.682 13.244 -21.889 4.286 0.151 -3.006 O4 X70 26 X70 N5 N5 N 0 1 N N N N N N -16.601 9.283 -27.680 4.114 -4.008 1.187 N5 X70 27 X70 O5 O5 O 0 1 N N N N N N -17.735 9.872 -21.901 4.488 2.503 -1.895 O5 X70 28 X70 O6 O6 O 0 1 N N N N N N -15.236 10.771 -26.713 3.603 -1.882 1.185 O6 X70 29 X70 C9 C19 C 0 1 N N N N N N -19.198 15.140 -27.728 -2.565 0.038 -0.568 C9 X70 30 X70 C11 C20 C 0 1 N N N N N N -20.577 14.052 -29.603 -3.166 -1.361 1.389 C11 X70 31 X70 C12 C21 C 0 1 N N N N N N -21.483 14.406 -30.793 -4.282 -1.696 2.380 C12 X70 32 X70 C14 C22 C 0 1 N N N N N N -19.475 13.094 -30.068 -2.849 -2.596 0.543 C14 X70 33 X70 C16 C23 C 0 1 N N N N N N -18.422 17.711 -31.525 -7.343 -0.765 -0.229 C16 X70 34 X70 C18 C24 C 0 1 N N R N N N -17.870 12.182 -22.377 4.356 0.168 -1.579 C18 X70 35 X70 C19 C25 C 0 1 N N N N N N -18.322 10.910 -21.678 4.525 1.587 -1.101 C19 X70 36 X70 C23 C26 C 0 1 N N N N N N -17.109 11.148 -24.683 2.896 -1.857 -1.483 C23 X70 37 X70 C25 C27 C 0 1 N N N N N N -18.857 10.273 -26.389 4.001 -4.094 -1.613 C25 X70 38 X70 C27 C28 C 0 1 N N N N N N -17.904 8.741 -28.044 4.442 -5.269 0.534 C27 X70 39 X70 F1 F1 F 0 1 N N N N N N -17.214 17.275 -31.370 -7.470 -0.054 -1.428 F1 X70 40 X70 F2 F2 F 0 1 N N N N N N -18.727 17.333 -32.759 -7.341 -2.138 -0.499 F2 X70 41 X70 F3 F3 F 0 1 N N N N N N -18.253 19.003 -31.377 -8.418 -0.456 0.612 F3 X70 42 X70 F4 F4 F 0 1 N N N N N N -21.865 10.768 -18.830 5.058 2.455 3.391 F4 X70 43 X70 F5 F5 F 0 1 N N N N N N -22.243 10.473 -20.970 2.974 2.349 2.349 F5 X70 44 X70 H1 H1 H 0 1 N N N N N N -17.148 13.899 -24.344 1.957 0.850 -2.291 H1 X70 45 X70 H2 H2 H 0 1 N N N N N N -21.736 17.162 -24.499 -0.391 3.802 1.015 H2 X70 46 X70 H3 H3 H 0 1 N N N N N N -17.966 19.114 -25.310 -3.558 3.746 -1.398 H3 X70 47 X70 H4 H4 H 0 1 N N N N N N -18.356 17.716 -26.369 -2.658 2.679 -2.502 H4 X70 48 X70 H5 H5 H 0 1 N N N N N N -19.411 19.169 -26.375 -3.008 2.148 -0.839 H5 X70 49 X70 H6 H6 H 0 1 N N N N N N -20.394 18.325 -22.675 -0.586 5.554 -0.579 H6 X70 50 X70 H7 H7 H 0 1 N N N N N N -18.785 19.048 -23.012 -0.850 5.221 -2.308 H7 X70 51 X70 H8 H8 H 0 1 N N N N N N -20.262 19.764 -23.741 -2.231 5.611 -1.255 H8 X70 52 X70 H9 H9 H 0 1 N N N N N N -20.782 17.393 -27.185 -2.342 1.917 1.382 H9 X70 53 X70 H10 H10 H 0 1 N N N N N N -21.751 15.978 -26.651 -0.662 1.323 1.561 H10 X70 54 X70 H11 H11 H 0 1 N N N N N N -20.829 16.026 -28.779 -3.773 0.681 1.069 H11 X70 55 X70 H12 H12 H 0 1 N N N N N N -20.755 13.111 -27.666 -2.158 -0.098 2.814 H12 X70 56 X70 H13 H13 H 0 1 N N N N N N -22.203 14.041 -28.180 -1.548 -1.769 2.751 H13 X70 57 X70 H14 H14 H 0 1 N N N N N N -21.850 12.444 -28.923 -1.143 -0.625 1.450 H14 X70 58 X70 H15 H15 H 0 1 N N N N N N -19.097 11.646 -24.058 3.121 -0.404 0.091 H15 X70 59 X70 H16 H16 H 0 1 N N N N N N -20.012 12.513 -19.515 4.272 3.891 0.709 H16 X70 60 X70 H17 H17 H 0 1 N N N N N N -20.735 12.614 -21.156 5.957 3.352 1.124 H17 X70 61 X70 H18 H18 H 0 1 N N N N N N -20.184 8.913 -20.691 5.829 0.682 1.654 H18 X70 62 X70 H19 H19 H 0 1 N N N N N N -19.580 9.613 -19.150 4.094 0.181 1.449 H19 X70 63 X70 H20 H20 H 0 1 N N N N N N -17.616 11.995 -26.570 4.995 -2.233 -1.183 H20 X70 64 X70 H21 H21 H 0 1 N N N N N N -18.832 10.623 -28.514 5.057 -5.966 -1.407 H21 X70 65 X70 H22 H22 H 0 1 N N N N N N -19.968 9.339 -27.980 5.957 -4.546 -0.818 H22 X70 66 X70 H23 H23 H 0 1 N N N N N N -17.885 15.732 -25.449 -0.593 0.946 -2.203 H23 X70 67 X70 H24 H24 H 0 1 N N N N N N -18.200 15.633 -30.139 -4.862 -0.985 -1.067 H24 X70 68 X70 H25 H25 H 0 1 N N N N N N -19.729 16.097 -23.317 0.756 3.166 -1.336 H25 X70 69 X70 H26 H26 H 0 1 N N N N N N -18.553 13.337 -20.952 3.551 0.664 -3.369 H26 X70 70 X70 H27 H27 H 0 1 N N N N N N -15.799 8.827 -28.067 4.037 -4.003 2.154 H27 X70 71 X70 H28 H28 H 0 1 N N N N N N -22.274 15.094 -30.460 -5.174 -2.001 1.834 H28 X70 72 X70 H29 H29 H 0 1 N N N N N N -20.884 14.889 -31.579 -3.959 -2.508 3.031 H29 X70 73 X70 H30 H30 H 0 1 N N N N N N -21.939 13.488 -31.192 -4.509 -0.816 2.983 H30 X70 74 X70 H31 H31 H 0 1 N N N N N N -18.826 12.840 -29.217 -2.053 -2.357 -0.164 H31 X70 75 X70 H32 H32 H 0 1 N N N N N N -19.932 12.176 -30.467 -2.525 -3.408 1.193 H32 X70 76 X70 H33 H33 H 0 1 N N N N N N -18.876 13.578 -30.854 -3.741 -2.901 -0.004 H33 X70 77 X70 H34 H34 H 0 1 N N N N N N -16.806 12.365 -22.169 5.207 -0.430 -1.250 H34 X70 78 X70 H35 H35 H 0 1 N N N N N N -17.080 10.154 -24.212 1.949 -2.254 -1.119 H35 X70 79 X70 H36 H36 H 0 1 N N N N N N -16.108 11.603 -24.643 2.903 -1.877 -2.573 H36 X70 80 X70 H37 H37 H 0 1 N N N N N N -19.675 10.979 -26.182 2.991 -4.500 -1.550 H37 X70 81 X70 H38 H38 H 0 1 N N N N N N -18.933 9.413 -25.707 4.297 -4.008 -2.658 H38 X70 82 X70 H39 H39 H 0 1 N N N N N N -18.118 7.858 -27.424 3.546 -5.888 0.475 H39 X70 83 X70 H40 H40 H 0 1 N N N N N N -17.895 8.451 -29.105 5.199 -5.791 1.119 H40 X70 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X70 F2 C16 SING N N 1 X70 C16 F3 SING N N 2 X70 C16 F1 SING N N 3 X70 C16 C15 SING N N 4 X70 C12 C11 SING N N 5 X70 C15 O2 DOUB N N 6 X70 C15 N2 SING N N 7 X70 C14 C11 SING N N 8 X70 N2 C10 SING N N 9 X70 C11 C10 SING N N 10 X70 C11 C13 SING N N 11 X70 C10 C9 SING N N 12 X70 C27 C26 SING N N 13 X70 C27 N5 SING N N 14 X70 C26 C25 SING N N 15 X70 O3 C9 DOUB N N 16 X70 C9 N1 SING N N 17 X70 N5 C28 SING N N 18 X70 C28 O6 DOUB N N 19 X70 C28 C24 SING N N 20 X70 N1 C8 SING N N 21 X70 N1 C2 SING N N 22 X70 C8 C4 SING N N 23 X70 C25 C24 SING N N 24 X70 C24 C23 SING N N 25 X70 C6 C5 SING N N 26 X70 C2 C1 SING N N 27 X70 C2 C3 SING N N 28 X70 O1 C1 DOUB N N 29 X70 C4 C5 SING N N 30 X70 C4 C3 SING N N 31 X70 C1 N3 SING N N 32 X70 C23 C17 SING N N 33 X70 C5 C3 SING N N 34 X70 C5 C7 SING N N 35 X70 N3 C17 SING N N 36 X70 C17 C18 SING N N 37 X70 C18 O4 SING N N 38 X70 C18 C19 SING N N 39 X70 O5 C19 DOUB N N 40 X70 C19 N4 SING N N 41 X70 F5 C21 SING N N 42 X70 N4 C20 SING N N 43 X70 N4 C22 SING N N 44 X70 C20 C21 SING N N 45 X70 C22 C21 SING N N 46 X70 C21 F4 SING N N 47 X70 N3 H1 SING N N 48 X70 C4 H2 SING N N 49 X70 C6 H3 SING N N 50 X70 C6 H4 SING N N 51 X70 C6 H5 SING N N 52 X70 C7 H6 SING N N 53 X70 C7 H7 SING N N 54 X70 C7 H8 SING N N 55 X70 C8 H9 SING N N 56 X70 C8 H10 SING N N 57 X70 C10 H11 SING N N 58 X70 C13 H12 SING N N 59 X70 C13 H13 SING N N 60 X70 C13 H14 SING N N 61 X70 C17 H15 SING N N 62 X70 C20 H16 SING N N 63 X70 C20 H17 SING N N 64 X70 C22 H18 SING N N 65 X70 C22 H19 SING N N 66 X70 C24 H20 SING N N 67 X70 C26 H21 SING N N 68 X70 C26 H22 SING N N 69 X70 C2 H23 SING N N 70 X70 N2 H24 SING N N 71 X70 C3 H25 SING N N 72 X70 O4 H26 SING N N 73 X70 N5 H27 SING N N 74 X70 C12 H28 SING N N 75 X70 C12 H29 SING N N 76 X70 C12 H30 SING N N 77 X70 C14 H31 SING N N 78 X70 C14 H32 SING N N 79 X70 C14 H33 SING N N 80 X70 C18 H34 SING N N 81 X70 C23 H35 SING N N 82 X70 C23 H36 SING N N 83 X70 C25 H37 SING N N 84 X70 C25 H38 SING N N 85 X70 C27 H39 SING N N 86 X70 C27 H40 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X70 SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCCNC3=O)C(O)C(=O)N3CC(F)(F)C3)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" X70 InChI InChI 1.06 "InChI=1S/C28H40F5N5O6/c1-25(2,3)19(36-24(44)28(31,32)33)23(43)38-10-14-16(26(14,4)5)17(38)21(41)35-15(9-13-7-6-8-34-20(13)40)18(39)22(42)37-11-27(29,30)12-37/h13-19,39H,6-12H2,1-5H3,(H,34,40)(H,35,41)(H,36,44)/t13-,14-,15-,16-,17-,18+,19+/m0/s1" X70 InChIKey InChI 1.06 GUMSXYQAJLBYRA-UYYZUGKPSA-N X70 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCCNC3=O)[C@@H](O)C(=O)N4CC(F)(F)C4)C2(C)C" X70 SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCCNC3=O)[CH](O)C(=O)N4CC(F)(F)C4)C2(C)C" X70 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCCNC3=O)[C@H](C(=O)N4CC(C4)(F)F)O)C" X70 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCCNC3=O)C(C(=O)N4CC(C4)(F)F)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X70 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(2S,3R)-4-(3,3-difluoroazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" X70 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-[3,3-bis(fluoranyl)azetidin-1-yl]-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]butan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X70 "Create component" 2022-11-02 RCSB X70 "Initial release" 2023-10-11 RCSB X70 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X70 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #