data_X7D # _chem_comp.id X7D _chem_comp.name "tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H41 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-01 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 583.783 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X7D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KVQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X7D C01 C1 C 0 1 N N N 120.065 44.262 84.816 4.668 2.824 -1.648 C01 X7D 1 X7D C02 C2 C 0 1 N N N 118.726 45.030 84.788 5.378 1.919 -0.638 C02 X7D 2 X7D C03 C3 C 0 1 N N N 118.861 46.397 85.393 6.170 0.845 -1.385 C03 X7D 3 X7D C04 C4 C 0 1 N N N 118.317 45.226 83.282 6.332 2.757 0.214 C04 X7D 4 X7D C06 C5 C 0 1 N N N 117.928 43.795 86.793 3.480 0.496 -0.377 C06 X7D 5 X7D C09 C6 C 0 1 N N S 118.234 41.332 87.144 1.676 -1.139 -0.271 C09 X7D 6 X7D C10 C7 C 0 1 N N N 117.380 40.209 86.487 0.235 -0.689 -0.024 C10 X7D 7 X7D C12 C8 C 0 1 N N S 114.416 39.472 87.019 -1.710 1.368 -0.248 C12 X7D 8 X7D C13 C9 C 0 1 N N N 113.847 38.593 85.844 -2.023 2.808 -0.657 C13 X7D 9 X7D C14 C10 C 0 1 Y N N 113.465 37.097 86.053 -1.130 3.753 0.105 C14 X7D 10 X7D C15 C11 C 0 1 Y N N 112.998 36.590 87.283 0.042 4.209 -0.468 C15 X7D 11 X7D C16 C12 C 0 1 Y N N 112.655 35.241 87.455 0.862 5.076 0.231 C16 X7D 12 X7D C17 C13 C 0 1 Y N N 112.755 34.345 86.389 0.509 5.486 1.503 C17 X7D 13 X7D C18 C14 C 0 1 Y N N 113.205 34.815 85.154 -0.664 5.030 2.076 C18 X7D 14 X7D C19 C15 C 0 1 Y N N 113.550 36.167 84.993 -1.486 4.168 1.375 C19 X7D 15 X7D C20 C16 C 0 1 N N N 115.161 38.723 88.142 -2.691 0.433 -0.907 C20 X7D 16 X7D C23 C17 C 0 1 N N N 116.688 36.863 89.033 -4.879 -0.632 -1.029 C23 X7D 17 X7D C24 C18 C 0 1 N N N 116.633 35.299 88.926 -6.194 -0.626 -0.247 C24 X7D 18 X7D C25 C19 C 0 1 N N N 117.580 34.508 89.885 -7.190 -1.575 -0.916 C25 X7D 19 X7D C26 C20 C 0 1 Y N N 118.997 34.294 89.360 -8.485 -1.568 -0.146 C26 X7D 20 X7D C27 C21 C 0 1 Y N N 119.355 34.405 88.008 -8.686 -2.461 0.897 C27 X7D 21 X7D C28 C22 C 0 1 Y N N 120.675 34.196 87.580 -9.893 -2.418 1.578 C28 X7D 22 X7D C29 C23 C 0 1 Y N N 121.647 33.871 88.538 -10.849 -1.495 1.198 C29 X7D 23 X7D C31 C24 C 0 1 Y N N 120.052 33.960 90.233 -9.485 -0.669 -0.465 C31 X7D 24 X7D C32 C25 C 0 1 N N N 118.774 40.947 88.577 1.882 -2.536 0.318 C32 X7D 25 X7D C33 C26 C 0 1 Y N N 119.507 39.634 88.814 3.257 -3.036 -0.044 C33 X7D 26 X7D C34 C27 C 0 1 Y N N 120.494 38.997 87.922 4.354 -2.751 0.788 C34 X7D 27 X7D C35 C28 C 0 1 Y N N 120.876 39.573 86.654 4.200 -2.001 1.967 C35 X7D 28 X7D C36 C29 C 0 1 Y N N 121.794 38.954 85.827 5.285 -1.745 2.748 C36 X7D 29 X7D C37 C30 C 0 1 Y N N 122.387 37.738 86.210 6.549 -2.215 2.397 C37 X7D 30 X7D C38 C31 C 0 1 Y N N 122.055 37.155 87.418 6.736 -2.944 1.263 C38 X7D 31 X7D C39 C32 C 0 1 Y N N 121.091 37.805 88.274 5.640 -3.229 0.432 C39 X7D 32 X7D C40 C33 C 0 1 Y N N 120.773 37.160 89.519 5.793 -3.979 -0.747 C40 X7D 33 X7D C41 C34 C 0 1 Y N N 119.857 37.754 90.362 4.708 -4.236 -1.528 C41 X7D 34 X7D C42 C35 C 0 1 Y N N 119.251 38.975 89.999 3.443 -3.770 -1.174 C42 X7D 35 X7D N08 N1 N 0 1 N N N 117.459 42.550 87.191 2.598 -0.198 0.370 N08 X7D 36 X7D N22 N2 N 0 1 N N N 115.953 37.588 87.961 -3.925 0.276 -0.388 N22 X7D 37 X7D N30 N3 N 0 1 Y N N 121.336 33.755 89.851 -10.623 -0.661 0.201 N30 X7D 38 X7D O05 O1 O 0 1 N N N 117.710 44.264 85.521 4.393 1.285 0.220 O05 X7D 39 X7D O07 O2 O 0 1 N N N 118.551 44.445 87.626 3.451 0.409 -1.588 O07 X7D 40 X7D O21 O3 O 0 1 N N N 115.078 39.169 89.309 -2.370 -0.178 -1.904 O21 X7D 41 X7D S11 S1 S 0 1 N N N 115.590 40.757 86.306 -0.025 0.943 -0.771 S11 X7D 42 X7D H1 H1 H 0 1 N N N 120.379 44.109 85.859 4.077 2.213 -2.330 H1 X7D 43 X7D H2 H2 H 0 1 N N N 119.938 43.286 84.324 4.012 3.515 -1.118 H2 X7D 44 X7D H3 H3 H 0 1 N N N 120.832 44.844 84.284 5.409 3.388 -2.214 H3 X7D 45 X7D H4 H4 H 0 1 N N N 119.147 46.304 86.451 6.909 1.321 -2.030 H4 X7D 46 X7D H5 H5 H 0 1 N N N 119.634 46.962 84.852 6.676 0.200 -0.666 H5 X7D 47 X7D H6 H6 H 0 1 N N N 117.900 46.927 85.319 5.490 0.248 -1.992 H6 X7D 48 X7D H7 H7 H 0 1 N N N 117.364 45.772 83.229 5.768 3.523 0.746 H7 X7D 49 X7D H8 H8 H 0 1 N N N 119.098 45.800 82.762 6.838 2.113 0.933 H8 X7D 50 X7D H9 H9 H 0 1 N N N 118.204 44.243 82.802 7.072 3.233 -0.430 H9 X7D 51 X7D H10 H10 H 0 1 N N N 119.111 41.496 86.501 1.870 -1.164 -1.343 H10 X7D 52 X7D H11 H11 H 0 1 N N N 117.420 39.309 87.118 -0.452 -1.407 -0.473 H11 X7D 53 X7D H12 H12 H 0 1 N N N 117.790 39.979 85.492 0.051 -0.632 1.048 H12 X7D 54 X7D H13 H13 H 0 1 N N N 113.587 40.045 87.460 -1.788 1.273 0.835 H13 X7D 55 X7D H14 H14 H 0 1 N N N 114.607 38.610 85.049 -1.850 2.928 -1.727 H14 X7D 56 X7D H15 H15 H 0 1 N N N 112.936 39.099 85.492 -3.066 3.032 -0.431 H15 X7D 57 X7D H16 H16 H 0 1 N N N 112.901 37.264 88.122 0.318 3.889 -1.462 H16 X7D 58 X7D H17 H17 H 0 1 N N N 112.311 34.893 88.418 1.778 5.432 -0.216 H17 X7D 59 X7D H18 H18 H 0 1 N N N 112.489 33.306 86.518 1.149 6.163 2.050 H18 X7D 60 X7D H19 H19 H 0 1 N N N 113.288 34.136 84.318 -0.939 5.350 3.070 H19 X7D 61 X7D H20 H20 H 0 1 N N N 113.892 36.507 84.027 -2.402 3.811 1.822 H20 X7D 62 X7D H21 H21 H 0 1 N N N 117.743 37.172 88.994 -4.468 -1.642 -1.041 H21 X7D 63 X7D H22 H22 H 0 1 N N N 116.256 37.155 90.002 -5.063 -0.303 -2.052 H22 X7D 64 X7D H23 H23 H 0 1 N N N 115.601 34.984 89.139 -6.010 -0.955 0.776 H23 X7D 65 X7D H24 H24 H 0 1 N N N 116.895 35.024 87.894 -6.605 0.384 -0.235 H24 X7D 66 X7D H25 H25 H 0 1 N N N 117.647 35.063 90.832 -7.374 -1.246 -1.939 H25 X7D 67 X7D H26 H26 H 0 1 N N N 117.132 33.521 90.069 -6.779 -2.584 -0.928 H26 X7D 68 X7D H27 H27 H 0 1 N N N 118.598 34.657 87.280 -7.921 -3.172 1.171 H27 X7D 69 X7D H28 H28 H 0 1 N N N 120.937 34.283 86.536 -10.084 -3.099 2.394 H28 X7D 70 X7D H29 H29 H 0 1 N N N 122.667 33.710 88.221 -11.791 -1.455 1.724 H29 X7D 71 X7D H30 H30 H 0 1 N N N 119.820 33.860 91.283 -9.334 0.032 -1.272 H30 X7D 72 X7D H31 H31 H 0 1 N N N 119.465 41.749 88.876 1.786 -2.491 1.403 H31 X7D 73 X7D H32 H32 H 0 1 N N N 117.903 40.944 89.249 1.131 -3.215 -0.086 H32 X7D 74 X7D H33 H33 H 0 1 N N N 120.434 40.509 86.345 3.227 -1.630 2.251 H33 X7D 75 X7D H34 H34 H 0 1 N N N 122.057 39.406 84.882 5.164 -1.168 3.654 H34 X7D 76 X7D H35 H35 H 0 1 N N N 123.103 37.259 85.559 7.393 -1.997 3.035 H35 X7D 77 X7D H36 H36 H 0 1 N N N 122.512 36.223 87.718 7.721 -3.300 1.003 H36 X7D 78 X7D H37 H37 H 0 1 N N N 121.243 36.226 89.790 6.767 -4.350 -1.031 H37 X7D 79 X7D H38 H38 H 0 1 N N N 119.604 37.284 91.301 4.829 -4.812 -2.433 H38 X7D 80 X7D H39 H39 H 0 1 N N N 118.547 39.419 90.687 2.598 -3.992 -1.809 H39 X7D 81 X7D H40 H40 H 0 1 N N N 116.521 42.493 87.533 2.574 -0.074 1.332 H40 X7D 82 X7D H41 H41 H 0 1 N N N 116.034 37.231 87.030 -4.181 0.765 0.410 H41 X7D 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X7D C04 C02 SING N N 1 X7D C02 C01 SING N N 2 X7D C02 C03 SING N N 3 X7D C02 O05 SING N N 4 X7D C19 C18 DOUB Y N 5 X7D C19 C14 SING Y N 6 X7D C18 C17 SING Y N 7 X7D O05 C06 SING N N 8 X7D C36 C37 DOUB Y N 9 X7D C36 C35 SING Y N 10 X7D C13 C14 SING N N 11 X7D C13 C12 SING N N 12 X7D C14 C15 DOUB Y N 13 X7D C37 C38 SING Y N 14 X7D S11 C10 SING N N 15 X7D S11 C12 SING N N 16 X7D C17 C16 DOUB Y N 17 X7D C10 C09 SING N N 18 X7D C35 C34 DOUB Y N 19 X7D C06 N08 SING N N 20 X7D C06 O07 DOUB N N 21 X7D C12 C20 SING N N 22 X7D C09 N08 SING N N 23 X7D C09 C32 SING N N 24 X7D C15 C16 SING Y N 25 X7D C38 C39 DOUB Y N 26 X7D C28 C27 DOUB Y N 27 X7D C28 C29 SING Y N 28 X7D C34 C39 SING Y N 29 X7D C34 C33 SING Y N 30 X7D N22 C20 SING N N 31 X7D N22 C23 SING N N 32 X7D C27 C26 SING Y N 33 X7D C20 O21 DOUB N N 34 X7D C39 C40 SING Y N 35 X7D C29 N30 DOUB Y N 36 X7D C32 C33 SING N N 37 X7D C33 C42 DOUB Y N 38 X7D C24 C23 SING N N 39 X7D C24 C25 SING N N 40 X7D C26 C25 SING N N 41 X7D C26 C31 DOUB Y N 42 X7D C40 C41 DOUB Y N 43 X7D N30 C31 SING Y N 44 X7D C42 C41 SING Y N 45 X7D C01 H1 SING N N 46 X7D C01 H2 SING N N 47 X7D C01 H3 SING N N 48 X7D C03 H4 SING N N 49 X7D C03 H5 SING N N 50 X7D C03 H6 SING N N 51 X7D C04 H7 SING N N 52 X7D C04 H8 SING N N 53 X7D C04 H9 SING N N 54 X7D C09 H10 SING N N 55 X7D C10 H11 SING N N 56 X7D C10 H12 SING N N 57 X7D C12 H13 SING N N 58 X7D C13 H14 SING N N 59 X7D C13 H15 SING N N 60 X7D C15 H16 SING N N 61 X7D C16 H17 SING N N 62 X7D C17 H18 SING N N 63 X7D C18 H19 SING N N 64 X7D C19 H20 SING N N 65 X7D C23 H21 SING N N 66 X7D C23 H22 SING N N 67 X7D C24 H23 SING N N 68 X7D C24 H24 SING N N 69 X7D C25 H25 SING N N 70 X7D C25 H26 SING N N 71 X7D C27 H27 SING N N 72 X7D C28 H28 SING N N 73 X7D C29 H29 SING N N 74 X7D C31 H30 SING N N 75 X7D C32 H31 SING N N 76 X7D C32 H32 SING N N 77 X7D C35 H33 SING N N 78 X7D C36 H34 SING N N 79 X7D C37 H35 SING N N 80 X7D C38 H36 SING N N 81 X7D C40 H37 SING N N 82 X7D C41 H38 SING N N 83 X7D C42 H39 SING N N 84 X7D N08 H40 SING N N 85 X7D N22 H41 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X7D SMILES ACDLabs 12.01 "CC(C)(OC(NC(Cc1cccc2c1cccc2)CSC(C(=O)NCCCc3cnccc3)Cc4ccccc4)=O)C" X7D InChI InChI 1.03 "InChI=1S/C35H41N3O3S/c1-35(2,3)41-34(40)38-30(23-29-18-9-17-28-16-7-8-19-31(28)29)25-42-32(22-26-12-5-4-6-13-26)33(39)37-21-11-15-27-14-10-20-36-24-27/h4-10,12-14,16-20,24,30,32H,11,15,21-23,25H2,1-3H3,(H,37,39)(H,38,40)/t30-,32-/m0/s1" X7D InChIKey InChI 1.03 XDOKSTKEPWQDPB-CDZUIXILSA-N X7D SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@H](CS[C@@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34" X7D SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34" X7D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N[C@@H](Cc1cccc2c1cccc2)CS[C@@H](Cc3ccccc3)C(=O)NCCCc4cccnc4" X7D SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCCc4cccnc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X7D "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" X7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{S})-1-naphthalen-1-yl-3-[(2~{S})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X7D "Create component" 2020-12-01 RCSB X7D "Initial release" 2021-01-20 RCSB ##