data_X7E # _chem_comp.id X7E _chem_comp.name "(4R)-5-[(S)-(3,4-DIFLUOROPHENYL)(HYDROXY)METHYL]-4-(3-HYDROXYPHENYL)-1,6-DIMETHYL-3,4-DIHYDROPYRIMIDINE-2(1H)-THIONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 F2 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(R)-(3,4-DIFLUOROPHENYL)(4-(3-HYDROXYPHENYL)-1,6-DIMETHYL-2-THIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-02-26 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.420 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X7E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2X7E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X7E CAN CAN C 0 1 Y N N -22.072 -15.715 27.883 -2.886 -1.060 0.838 CAN X7E 1 X7E CAW CAW C 0 1 Y N N -22.488 -16.383 26.737 -4.051 -1.031 0.090 CAW X7E 2 X7E FAG FAG F 0 1 N N N -23.769 -16.636 26.434 -4.982 -1.997 0.251 FAG X7E 3 X7E CAV CAV C 0 1 Y N N -21.590 -16.785 25.789 -4.261 -0.010 -0.824 CAV X7E 4 X7E FAF FAF F 0 1 N N N -22.155 -17.391 24.746 -5.397 0.020 -1.555 FAF X7E 5 X7E CAL CAL C 0 1 Y N N -20.240 -16.554 25.936 -3.306 0.978 -0.987 CAL X7E 6 X7E CAJ CAJ C 0 1 Y N N -19.821 -15.881 27.078 -2.144 0.947 -0.239 CAJ X7E 7 X7E CAU CAU C 0 1 Y N N -20.720 -15.458 28.066 -1.934 -0.071 0.673 CAU X7E 8 X7E CAQ CAQ C 0 1 N N S -20.266 -14.786 29.376 -0.667 -0.103 1.487 CAQ X7E 9 X7E OAC OAC O 0 1 N N N -20.788 -13.499 29.355 -0.327 1.224 1.891 OAC X7E 10 X7E CAS CAS C 0 1 N N N -18.746 -14.755 29.468 0.451 -0.677 0.654 CAS X7E 11 X7E CAP CAP C 0 1 N N N -18.015 -15.921 29.659 1.011 -1.831 0.971 CAP X7E 12 X7E CAA CAA C 0 1 N N N -18.668 -17.300 29.788 0.522 -2.582 2.182 CAA X7E 13 X7E NAZ NAZ N 0 1 N N N -16.632 -15.838 29.772 2.039 -2.363 0.210 NAZ X7E 14 X7E CAB CAB C 0 1 N N N -15.796 -17.044 29.902 2.613 -3.647 0.620 CAB X7E 15 X7E CAR CAR C 0 1 N N N -16.009 -14.626 29.669 2.535 -1.765 -0.881 CAR X7E 16 X7E SAE SAE S 0 1 N N N -14.377 -14.644 29.426 3.807 -2.522 -1.740 SAE X7E 17 X7E NAO NAO N 0 1 N N N -16.685 -13.446 29.472 2.058 -0.583 -1.321 NAO X7E 18 X7E CAY CAY C 0 1 N N R -18.099 -13.432 29.768 0.960 0.050 -0.573 CAY X7E 19 X7E CAX CAX C 0 1 Y N N -18.124 -13.325 31.357 1.426 1.417 -0.142 CAX X7E 20 X7E CAM CAM C 0 1 Y N N -17.215 -12.538 32.079 0.828 2.547 -0.665 CAM X7E 21 X7E CAK CAK C 0 1 Y N N -19.006 -14.059 32.145 2.448 1.538 0.781 CAK X7E 22 X7E CAH CAH C 0 1 Y N N -19.012 -13.963 33.539 2.878 2.791 1.179 CAH X7E 23 X7E CAI CAI C 0 1 Y N N -18.126 -13.140 34.239 2.288 3.924 0.654 CAI X7E 24 X7E CAT CAT C 0 1 Y N N -17.196 -12.444 33.486 1.258 3.805 -0.268 CAT X7E 25 X7E OAD OAD O 0 1 N N N -16.267 -11.660 34.140 0.672 4.918 -0.782 OAD X7E 26 X7E HAN HAN H 0 1 N N N -22.793 -15.399 28.623 -2.724 -1.852 1.553 HAN X7E 27 X7E HAL HAL H 0 1 N N N -19.532 -16.884 25.190 -3.468 1.774 -1.699 HAL X7E 28 X7E HAJ HAJ H 0 1 N N N -18.768 -15.678 27.208 -1.399 1.718 -0.367 HAJ X7E 29 X7E HAQ HAQ H 0 1 N N N -20.623 -15.343 30.254 -0.818 -0.725 2.370 HAQ X7E 30 X7E HAC HAC H 0 1 N N N -20.907 -13.191 30.246 -0.294 1.861 1.164 HAC X7E 31 X7E HAY HAY H 0 1 N N N -18.610 -12.642 29.198 0.120 0.186 -1.254 HAY X7E 32 X7E HAA1 HAA1 H 0 0 N N N -18.825 -17.727 28.787 -0.554 -2.445 2.284 HAA1 X7E 33 X7E HAA2 HAA2 H 0 0 N N N -18.012 -17.963 30.371 0.745 -3.642 2.067 HAA2 X7E 34 X7E HAA3 HAA3 H 0 0 N N N -19.637 -17.200 30.299 1.023 -2.200 3.073 HAA3 X7E 35 X7E HAB1 HAB1 H 0 0 N N N -15.588 -17.456 28.903 2.099 -4.457 0.101 HAB1 X7E 36 X7E HAB2 HAB2 H 0 0 N N N -14.848 -16.782 30.395 3.673 -3.669 0.368 HAB2 X7E 37 X7E HAB3 HAB3 H 0 0 N N N -16.328 -17.795 30.504 2.493 -3.772 1.696 HAB3 X7E 38 X7E HAO HAO H 0 1 N N N -16.216 -12.629 29.137 2.427 -0.162 -2.114 HAO X7E 39 X7E HAM HAM H 0 1 N N N -16.485 -11.969 31.523 0.027 2.451 -1.384 HAM X7E 40 X7E HAK HAK H 0 1 N N N -19.708 -14.724 31.664 2.911 0.654 1.193 HAK X7E 41 X7E HAH HAH H 0 1 N N N -19.729 -14.547 34.097 3.676 2.884 1.901 HAH X7E 42 X7E HAI HAI H 0 1 N N N -18.165 -13.051 35.315 2.624 4.902 0.965 HAI X7E 43 X7E HAD HAD H 0 1 N N N -15.538 -11.480 33.558 -0.087 5.234 -0.273 HAD X7E 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X7E CAN CAW SING Y N 1 X7E CAN CAU DOUB Y N 2 X7E CAW FAG SING N N 3 X7E CAW CAV DOUB Y N 4 X7E CAV FAF SING N N 5 X7E CAV CAL SING Y N 6 X7E CAL CAJ DOUB Y N 7 X7E CAJ CAU SING Y N 8 X7E CAU CAQ SING N N 9 X7E CAQ OAC SING N N 10 X7E CAQ CAS SING N N 11 X7E CAS CAP DOUB N N 12 X7E CAS CAY SING N N 13 X7E CAP CAA SING N N 14 X7E CAP NAZ SING N N 15 X7E NAZ CAB SING N N 16 X7E NAZ CAR SING N N 17 X7E CAR SAE DOUB N N 18 X7E CAR NAO SING N N 19 X7E NAO CAY SING N N 20 X7E CAY CAX SING N N 21 X7E CAX CAM SING Y N 22 X7E CAX CAK DOUB Y N 23 X7E CAM CAT DOUB Y N 24 X7E CAK CAH SING Y N 25 X7E CAH CAI DOUB Y N 26 X7E CAI CAT SING Y N 27 X7E CAT OAD SING N N 28 X7E CAN HAN SING N N 29 X7E CAL HAL SING N N 30 X7E CAJ HAJ SING N N 31 X7E CAQ HAQ SING N N 32 X7E OAC HAC SING N N 33 X7E CAY HAY SING N N 34 X7E CAA HAA1 SING N N 35 X7E CAA HAA2 SING N N 36 X7E CAA HAA3 SING N N 37 X7E CAB HAB1 SING N N 38 X7E CAB HAB2 SING N N 39 X7E CAB HAB3 SING N N 40 X7E NAO HAO SING N N 41 X7E CAM HAM SING N N 42 X7E CAK HAK SING N N 43 X7E CAH HAH SING N N 44 X7E CAI HAI SING N N 45 X7E OAD HAD SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X7E SMILES ACDLabs 10.04 "S=C2NC(c1cccc(O)c1)C(=C(N2C)C)C(O)c3ccc(F)c(F)c3" X7E SMILES_CANONICAL CACTVS 3.352 "CN1C(=C([C@@H](O)c2ccc(F)c(F)c2)[C@H](NC1=S)c3cccc(O)c3)C" X7E SMILES CACTVS 3.352 "CN1C(=C([CH](O)c2ccc(F)c(F)c2)[CH](NC1=S)c3cccc(O)c3)C" X7E SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC1=C([C@H](NC(=S)N1C)c2cccc(c2)O)[C@H](c3ccc(c(c3)F)F)O" X7E SMILES "OpenEye OEToolkits" 1.6.1 "CC1=C(C(NC(=S)N1C)c2cccc(c2)O)C(c3ccc(c(c3)F)F)O" X7E InChI InChI 1.03 "InChI=1S/C19H18F2N2O2S/c1-10-16(18(25)12-6-7-14(20)15(21)9-12)17(22-19(26)23(10)2)11-4-3-5-13(24)8-11/h3-9,17-18,24-25H,1-2H3,(H,22,26)/t17-,18+/m1/s1" X7E InChIKey InChI 1.03 WGZRWWKQRQTPSR-MSOLQXFVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X7E "SYSTEMATIC NAME" ACDLabs 10.04 "(4R)-5-[(S)-(3,4-difluorophenyl)(hydroxy)methyl]-4-(3-hydroxyphenyl)-1,6-dimethyl-3,4-dihydropyrimidine-2(1H)-thione" X7E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(4R)-5-[(S)-(3,4-difluorophenyl)-hydroxy-methyl]-4-(3-hydroxyphenyl)-1,6-dimethyl-3,4-dihydropyrimidine-2-thione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X7E "Create component" 2010-02-26 EBI X7E "Modify aromatic_flag" 2011-06-04 RCSB X7E "Modify descriptor" 2011-06-04 RCSB X7E "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X7E _pdbx_chem_comp_synonyms.name "(R)-(3,4-DIFLUOROPHENYL)(4-(3-HYDROXYPHENYL)-1,6-DIMETHYL-2-THIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##