data_X7F # _chem_comp.id X7F _chem_comp.name "5,8-bis(oxidanyl)naphthalene-1,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-24 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 190.152 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X7F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WS3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X7F C02 C1 C 0 1 N N N N N N 48.727 17.090 17.537 -1.418 -1.260 0.018 C02 X7F 1 X7F C03 C2 C 0 1 N N N N N N 47.344 16.691 17.993 -0.665 -2.503 -0.247 C03 X7F 2 X7F C04 C3 C 0 1 N N N N N N 47.166 16.016 19.310 0.677 -2.501 -0.235 C04 X7F 3 X7F C05 C4 C 0 1 N N N N N N 48.363 15.728 20.184 1.421 -1.257 0.043 C05 X7F 4 X7F C06 C5 C 0 1 Y N N N N N 49.790 16.142 19.699 0.706 0.032 0.008 C06 X7F 5 X7F C07 C6 C 0 1 Y N N N N N 49.965 16.791 18.444 -0.706 0.030 -0.004 C07 X7F 6 X7F C08 C7 C 0 1 Y N N N N N 51.249 17.162 18.023 -1.397 1.240 -0.037 C08 X7F 7 X7F C10 C8 C 0 1 Y N N N N N 52.359 16.893 18.837 -0.685 2.443 -0.057 C10 X7F 8 X7F C11 C9 C 0 1 Y N N N N N 52.184 16.247 20.090 0.679 2.445 -0.045 C11 X7F 9 X7F C12 C10 C 0 1 Y N N N N N 50.899 15.876 20.515 1.394 1.243 -0.013 C12 X7F 10 X7F O01 O1 O 0 1 N N N N N N 48.876 17.630 16.492 -2.611 -1.301 0.247 O01 X7F 11 X7F O09 O2 O 0 1 N N N N N N 51.423 17.798 16.789 -2.752 1.249 -0.049 O09 X7F 12 X7F O13 O3 O 0 1 N N N N N N 50.710 15.236 21.750 2.750 1.257 -0.001 O13 X7F 13 X7F O14 O4 O 0 1 N N N N N N 48.229 15.189 21.234 2.609 -1.294 0.298 O14 X7F 14 X7F H1 H1 H 0 1 N N N N N N 46.487 16.894 17.367 -1.199 -3.419 -0.452 H1 X7F 15 X7F H2 H2 H 0 1 N N N N N N 46.178 15.732 19.640 1.216 -3.416 -0.429 H2 X7F 16 X7F H3 H3 H 0 1 N N N N N N 53.348 17.177 18.511 -1.221 3.381 -0.082 H3 X7F 17 X7F H4 H4 H 0 1 N N N N N N 53.040 16.041 20.716 1.212 3.384 -0.062 H4 X7F 18 X7F H5 H5 H 0 1 N N N N N N 50.579 17.904 16.365 -3.154 1.271 0.830 H5 X7F 19 X7F H6 H6 H 0 1 N N N N N N 49.785 15.059 21.877 3.151 1.241 -0.880 H6 X7F 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X7F O01 C02 DOUB N N 1 X7F O09 C08 SING N N 2 X7F C02 C03 SING N N 3 X7F C02 C07 SING N N 4 X7F C03 C04 DOUB N N 5 X7F C08 C07 DOUB Y N 6 X7F C08 C10 SING Y N 7 X7F C07 C06 SING Y N 8 X7F C10 C11 DOUB Y N 9 X7F C04 C05 SING N N 10 X7F C06 C05 SING N N 11 X7F C06 C12 DOUB Y N 12 X7F C11 C12 SING Y N 13 X7F C05 O14 DOUB N N 14 X7F C12 O13 SING N N 15 X7F C03 H1 SING N N 16 X7F C04 H2 SING N N 17 X7F C10 H3 SING N N 18 X7F C11 H4 SING N N 19 X7F O09 H5 SING N N 20 X7F O13 H6 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X7F InChI InChI 1.06 "InChI=1S/C10H6O4/c11-5-1-2-6(12)10-8(14)4-3-7(13)9(5)10/h1-4,11-12H" X7F InChIKey InChI 1.06 RQNVIKXOOKXAJQ-UHFFFAOYSA-N X7F SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(O)c2C(=O)C=CC(=O)c12" X7F SMILES CACTVS 3.385 "Oc1ccc(O)c2C(=O)C=CC(=O)c12" X7F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1O)C(=O)C=CC2=O)O" X7F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1O)C(=O)C=CC2=O)O" # _pdbx_chem_comp_identifier.comp_id X7F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5,8-bis(oxidanyl)naphthalene-1,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X7F "Create component" 2023-10-24 PDBJ X7F "Modify PCM" 2024-09-27 PDBE X7F "Initial release" 2024-10-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X7F _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C04 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #