data_X7I # _chem_comp.id X7I _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[2-(1~{H}-indol-3-yl)ethyl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-05 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X7I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X7I C4 C1 C 0 1 Y N N 8.283 5.487 0.400 -5.068 -0.384 -0.255 C4 X7I 1 X7I C6 C2 C 0 1 Y N N 8.453 4.814 -1.900 -6.481 -2.370 -0.014 C6 X7I 2 X7I C13 C3 C 0 1 N N N 4.400 8.173 8.308 5.533 0.209 -1.431 C13 X7I 3 X7I C16 C4 C 0 1 Y N N 0.904 8.553 9.656 8.791 -0.950 0.045 C16 X7I 4 X7I C2 C5 C 0 1 Y N N 10.359 5.441 -0.510 -7.329 -0.280 -0.737 C2 X7I 5 X7I C5 C6 C 0 1 Y N N 7.635 5.082 -0.784 -5.166 -1.737 0.081 C5 X7I 6 X7I C11 C7 C 0 1 N N N 4.619 4.961 7.613 2.388 1.548 0.033 C11 X7I 7 X7I C12 C8 C 0 1 N N N 5.127 7.025 8.914 4.685 0.807 -0.307 C12 X7I 8 X7I C14 C9 C 0 1 Y N N 2.934 8.217 8.621 6.938 -0.016 -0.934 C14 X7I 9 X7I C15 C10 C 0 1 Y N N 1.924 7.759 7.835 7.981 0.817 -1.082 C15 X7I 10 X7I C17 C11 C 0 1 Y N N -0.020 8.968 10.616 9.535 -1.904 0.732 C17 X7I 11 X7I N12 N1 N 0 1 N N N 4.443 5.755 8.677 3.319 1.026 -0.790 N12 X7I 12 X7I "O5'" O1 O 0 1 N N N 5.579 5.466 6.810 1.133 1.749 -0.411 "O5'" X7I 13 X7I "C5'" C12 C 0 1 N N N 5.746 4.823 5.518 0.184 2.315 0.531 "C5'" X7I 14 X7I "C4'" C13 C 0 1 N N R 6.838 5.559 4.807 -1.178 2.469 -0.149 "C4'" X7I 15 X7I "O4'" O2 O 0 1 N N N 6.984 4.990 3.487 -1.725 1.174 -0.447 "O4'" X7I 16 X7I "C3'" C14 C 0 1 N N S 6.595 7.084 4.624 -2.162 3.177 0.803 "C3'" X7I 17 X7I "O3'" O3 O 0 1 N N N 7.592 7.855 5.301 -2.630 4.396 0.223 "O3'" X7I 18 X7I "C2'" C15 C 0 1 N N R 6.584 7.268 3.106 -3.327 2.170 0.962 "C2'" X7I 19 X7I "O2'" O4 O 0 1 N N N 7.080 8.493 2.598 -4.588 2.843 0.945 "O2'" X7I 20 X7I "C1'" C16 C 0 1 N N R 7.451 6.079 2.696 -3.157 1.276 -0.298 "C1'" X7I 21 X7I N9 N2 N 0 1 Y N N 7.277 5.662 1.317 -3.750 -0.045 -0.076 N9 X7I 22 X7I C8 C17 C 0 1 Y N N 6.088 5.352 0.686 -3.095 -1.161 0.344 C8 X7I 23 X7I N7 N3 N 0 1 Y N N 6.264 5.023 -0.578 -3.933 -2.156 0.437 N7 X7I 24 X7I N6 N4 N 0 1 Y N N 8.194 4.419 -3.163 -6.933 -3.584 0.222 N6 X7I 25 X7I N1 N5 N 0 1 Y N N 9.822 4.998 -1.699 -7.535 -1.590 -0.428 N1 X7I 26 X7I N3 N6 N 0 1 Y N N 9.628 5.678 0.549 -6.161 0.284 -0.648 N3 X7I 27 X7I C9 C18 C 0 1 Y N N 9.435 4.379 -3.759 -8.248 -3.620 -0.026 C9 X7I 28 X7I C10 C19 C 0 1 Y N N 10.443 4.687 -2.901 -8.643 -2.397 -0.435 C10 X7I 29 X7I O11 O5 O 0 1 N N N 3.976 3.938 7.392 2.682 1.838 1.176 O11 X7I 30 X7I N15 N7 N 0 1 Y N N 0.711 7.936 8.450 9.095 0.277 -0.501 N15 X7I 31 X7I C21 C20 C 0 1 Y N N 2.300 8.740 9.815 7.427 -1.188 -0.205 C21 X7I 32 X7I C20 C21 C 0 1 Y N N 2.760 9.344 11.000 6.835 -2.373 0.236 C20 X7I 33 X7I C19 C22 C 0 1 Y N N 1.846 9.748 11.954 7.584 -3.296 0.910 C19 X7I 34 X7I C18 C23 C 0 1 Y N N 0.473 9.567 11.755 8.931 -3.066 1.158 C18 X7I 35 X7I H1 H1 H 0 1 N N N 4.516 8.115 7.216 5.103 -0.741 -1.745 H1 X7I 36 X7I H2 H2 H 0 1 N N N 4.858 9.103 8.677 5.553 0.897 -2.276 H2 X7I 37 X7I H3 H3 H 0 1 N N N 11.426 5.599 -0.450 -8.170 0.316 -1.061 H3 X7I 38 X7I H4 H4 H 0 1 N N N 6.135 6.972 8.476 4.665 0.119 0.539 H4 X7I 39 X7I H5 H5 H 0 1 N N N 5.206 7.188 9.999 5.115 1.758 0.008 H5 X7I 40 X7I H6 H6 H 0 1 N N N 2.058 7.316 6.859 7.944 1.773 -1.583 H6 X7I 41 X7I H7 H7 H 0 1 N N N -1.081 8.825 10.472 10.583 -1.733 0.930 H7 X7I 42 X7I H8 H8 H 0 1 N N N 3.787 5.453 9.369 3.084 0.794 -1.702 H8 X7I 43 X7I H9 H9 H 0 1 N N N 4.811 4.883 4.941 0.087 1.654 1.392 H9 X7I 44 X7I H10 H10 H 0 1 N N N 6.026 3.768 5.653 0.538 3.292 0.861 H10 X7I 45 X7I H11 H11 H 0 1 N N N 7.775 5.429 5.368 -1.071 3.047 -1.067 H11 X7I 46 X7I H12 H12 H 0 1 N N N 5.597 7.327 5.017 -1.689 3.371 1.766 H12 X7I 47 X7I H13 H13 H 0 1 N N N 7.540 7.691 6.235 -3.252 4.883 0.780 H13 X7I 48 X7I H14 H14 H 0 1 N N N 5.561 7.096 2.741 -3.213 1.584 1.873 H14 X7I 49 X7I H15 H15 H 0 1 N N N 6.514 9.204 2.875 -4.703 3.480 1.663 H15 X7I 50 X7I H16 H16 H 0 1 N N N 8.508 6.300 2.907 -3.600 1.755 -1.171 H16 X7I 51 X7I H17 H17 H 0 1 N N N 5.124 5.376 1.173 -2.040 -1.215 0.571 H17 X7I 52 X7I H18 H18 H 0 1 N N N 9.591 4.129 -4.798 -8.885 -4.485 0.080 H18 X7I 53 X7I H19 H19 H 0 1 N N N 11.503 4.689 -3.110 -9.646 -2.106 -0.711 H19 X7I 54 X7I H20 H20 H 0 1 N N N -0.174 7.658 8.076 9.970 0.696 -0.477 H20 X7I 55 X7I H21 H21 H 0 1 N N N 3.818 9.490 11.162 5.788 -2.559 0.047 H21 X7I 56 X7I H22 H22 H 0 1 N N N 2.196 10.210 12.865 7.126 -4.213 1.251 H22 X7I 57 X7I H23 H23 H 0 1 N N N -0.218 9.905 12.513 9.510 -3.805 1.691 H23 X7I 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X7I C9 N6 SING Y N 1 X7I C9 C10 DOUB Y N 2 X7I N6 C6 DOUB Y N 3 X7I C10 N1 SING Y N 4 X7I C6 N1 SING Y N 5 X7I C6 C5 SING Y N 6 X7I N1 C2 SING Y N 7 X7I C5 N7 SING Y N 8 X7I C5 C4 DOUB Y N 9 X7I N7 C8 DOUB Y N 10 X7I C2 N3 DOUB Y N 11 X7I C4 N3 SING Y N 12 X7I C4 N9 SING Y N 13 X7I C8 N9 SING Y N 14 X7I N9 "C1'" SING N N 15 X7I "O2'" "C2'" SING N N 16 X7I "C1'" "C2'" SING N N 17 X7I "C1'" "O4'" SING N N 18 X7I "C2'" "C3'" SING N N 19 X7I "O4'" "C4'" SING N N 20 X7I "C3'" "C4'" SING N N 21 X7I "C3'" "O3'" SING N N 22 X7I "C4'" "C5'" SING N N 23 X7I "C5'" "O5'" SING N N 24 X7I "O5'" C11 SING N N 25 X7I O11 C11 DOUB N N 26 X7I C11 N12 SING N N 27 X7I C15 N15 SING Y N 28 X7I C15 C14 DOUB Y N 29 X7I C13 C14 SING N N 30 X7I C13 C12 SING N N 31 X7I N15 C16 SING Y N 32 X7I C14 C21 SING Y N 33 X7I N12 C12 SING N N 34 X7I C16 C21 DOUB Y N 35 X7I C16 C17 SING Y N 36 X7I C21 C20 SING Y N 37 X7I C17 C18 DOUB Y N 38 X7I C20 C19 DOUB Y N 39 X7I C18 C19 SING Y N 40 X7I C13 H1 SING N N 41 X7I C13 H2 SING N N 42 X7I C2 H3 SING N N 43 X7I C12 H4 SING N N 44 X7I C12 H5 SING N N 45 X7I C15 H6 SING N N 46 X7I C17 H7 SING N N 47 X7I N12 H8 SING N N 48 X7I "C5'" H9 SING N N 49 X7I "C5'" H10 SING N N 50 X7I "C4'" H11 SING N N 51 X7I "C3'" H12 SING N N 52 X7I "O3'" H13 SING N N 53 X7I "C2'" H14 SING N N 54 X7I "O2'" H15 SING N N 55 X7I "C1'" H16 SING N N 56 X7I C8 H17 SING N N 57 X7I C9 H18 SING N N 58 X7I C10 H19 SING N N 59 X7I N15 H20 SING N N 60 X7I C20 H21 SING N N 61 X7I C19 H22 SING N N 62 X7I C18 H23 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X7I InChI InChI 1.06 "InChI=1S/C23H23N7O5/c31-18-16(10-34-23(33)25-6-5-13-9-26-15-4-2-1-3-14(13)15)35-22(19(18)32)30-12-27-17-20-24-7-8-29(20)11-28-21(17)30/h1-4,7-9,11-12,16,18-19,22,26,31-32H,5-6,10H2,(H,25,33)/t16-,18-,19-,22-/m1/s1" X7I InChIKey InChI 1.06 PDQVMZAZVYVBOK-WGQQHEPDSA-N X7I SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COC(=O)NCCc2c[nH]c3ccccc23)n4cnc5c6nccn6cnc45" X7I SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1COC(=O)NCCc2c[nH]c3ccccc23)n4cnc5c6nccn6cnc45" X7I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCNC(=O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncn6c5ncc6)O)O" X7I SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCNC(=O)OCC3C(C(C(O3)n4cnc5c4ncn6c5ncc6)O)O" # _pdbx_chem_comp_identifier.comp_id X7I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[2-(1~{H}-indol-3-yl)ethyl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X7I "Create component" 2023-06-05 PDBE X7I "Initial release" 2023-06-14 RCSB #