data_X7K
# 
_chem_comp.id                                    X7K 
_chem_comp.name                                  "2-(Cyanomethylthio)acetic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C4 H5 N O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-24 
_chem_comp.pdbx_modified_date                    2024-10-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        131.153 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X7K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UQ0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X7K C01 C1 C 0 1 N N N N N N 14.765 15.654 49.230 -1.846 0.869  0.000  C01 X7K 1  
X7K C02 C2 C 0 1 N N N N N N 15.535 16.683 48.492 -3.114 0.122  0.000  C02 X7K 2  
X7K C05 C3 C 0 1 N N N N N N 13.563 15.410 46.478 0.993  0.794  -0.000 C05 X7K 3  
X7K C06 C4 C 0 1 N N N N N N 14.920 14.719 46.082 2.249  -0.038 -0.000 C06 X7K 4  
X7K N03 N1 N 0 1 N N N N N N 16.142 17.527 47.986 -4.092 -0.455 0.000  N03 X7K 5  
X7K O07 O1 O 0 1 N N N N N N 15.210 13.627 46.626 3.450  0.560  0.000  O07 X7K 6  
X7K O08 O2 O 0 1 N N N N N N 15.631 15.322 45.268 2.174  -1.244 -0.000 O08 X7K 7  
X7K S04 S1 S 0 1 N N N N N N 13.280 15.140 48.269 -0.456 -0.297 -0.000 S04 X7K 8  
X7K H1  H1 H 0 1 N N N N N N 14.444 16.068 50.197 -1.794 1.496  -0.890 H1  X7K 9  
X7K H2  H2 H 0 1 N N N N N N 15.406 14.777 49.401 -1.794 1.496  0.890  H2  X7K 10 
X7K H3  H3 H 0 1 N N N N N N 13.620 16.488 46.269 0.974  1.423  0.890  H3  X7K 11 
X7K H4  H4 H 0 1 N N N N N N 12.738 14.968 45.900 0.974  1.423  -0.890 H4  X7K 12 
X7K H5  H5 H 0 1 N N N N N N 16.059 13.334 46.317 4.227  -0.016 -0.000 H5  X7K 13 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X7K O08 C06 DOUB N N 1  
X7K C06 C05 SING N N 2  
X7K C06 O07 SING N N 3  
X7K C05 S04 SING N N 4  
X7K N03 C02 TRIP N N 5  
X7K S04 C01 SING N N 6  
X7K C02 C01 SING N N 7  
X7K C01 H1  SING N N 8  
X7K C01 H2  SING N N 9  
X7K C05 H3  SING N N 10 
X7K C05 H4  SING N N 11 
X7K O07 H5  SING N N 12 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X7K SMILES           ACDLabs              12.01 "O=C(O)CSCC#N"                                      
X7K InChI            InChI                1.06  "InChI=1S/C4H5NO2S/c5-1-2-8-3-4(6)7/h2-3H2,(H,6,7)" 
X7K InChIKey         InChI                1.06  JRRFRAHROZUYJH-UHFFFAOYSA-N                         
X7K SMILES_CANONICAL CACTVS               3.385 "OC(=O)CSCC#N"                                      
X7K SMILES           CACTVS               3.385 "OC(=O)CSCC#N"                                      
X7K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C#N)SCC(=O)O"                                    
X7K SMILES           "OpenEye OEToolkits" 2.0.7 "C(C#N)SCC(=O)O"                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X7K "SYSTEMATIC NAME" ACDLabs              12.01 "[(cyanomethyl)sulfanyl]acetic acid"   
X7K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(cyanomethylsulfanyl)ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X7K "Create component" 2023-10-24 RCSB 
X7K "Initial release"  2024-10-30 RCSB 
#