data_X7T # _chem_comp.id X7T _chem_comp.name "1-{2-[4-(2,4-difluorophenoxy)piperidin-1-yl]-3-{[(3R)-oxolan-3-yl]amino}-7,8-dihydropyrido[3,4-b]pyrazin-6(5H)-yl}ethan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 F2 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-05 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X7T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T1W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X7T C2 C1 C 0 1 Y N N N N N -9.328 1.682 5.607 6.187 2.002 -0.918 C2 X7T 1 X7T C5 C2 C 0 1 Y N N N N N -11.328 0.861 7.340 6.665 -0.331 0.498 C5 X7T 2 X7T C1 C3 C 0 1 Y N N N N N -9.199 0.519 6.349 7.485 1.563 -0.721 C1 X7T 3 X7T C3 C4 C 0 1 Y N N N N N -10.480 2.445 5.730 5.126 1.276 -0.408 C3 X7T 4 X7T C4 C5 C 0 1 Y N N N N N -11.481 2.039 6.610 5.363 0.109 0.301 C4 X7T 5 X7T O2 O1 O 0 1 N N N N N N -12.226 11.009 3.541 -3.491 -5.183 -1.369 O2 X7T 6 X7T O3 O2 O 0 1 N N N N N N -11.707 13.004 12.258 -7.125 2.208 1.051 O3 X7T 7 X7T O1 O3 O 0 1 N N N N N N -12.639 2.807 6.716 4.320 -0.606 0.802 O1 X7T 8 X7T C10 C6 C 0 1 N N N N N N -14.064 5.736 8.579 0.685 -0.032 1.556 C10 X7T 9 X7T C11 C7 C 0 1 N N N N N N -13.991 4.393 7.866 2.094 -0.598 1.748 C11 X7T 10 X7T C12 C8 C 0 1 Y N N N N N -13.254 8.015 8.551 -1.143 -0.016 0.066 C12 X7T 11 X7T C13 C9 C 0 1 Y N N N N N -13.810 9.302 10.396 -2.728 1.643 -0.158 C13 X7T 12 X7T C14 C10 C 0 1 N N N N N N -14.360 9.339 11.792 -3.006 3.122 -0.214 C14 X7T 13 X7T C15 C11 C 0 1 N N N N N N -14.639 10.757 12.264 -4.361 3.397 -0.864 C15 X7T 14 X7T C16 C12 C 0 1 N N N N N N -13.465 11.802 10.390 -5.166 1.055 -0.456 C16 X7T 15 X7T C17 C13 C 0 1 Y N N N N N -13.389 10.452 9.730 -3.715 0.694 -0.261 C17 X7T 16 X7T C18 C14 C 0 1 Y N N N N N -12.817 9.178 7.884 -2.153 -0.984 -0.030 C18 X7T 17 X7T C19 C15 C 0 1 N N R N N N -12.894 9.936 5.528 -2.907 -3.339 0.056 C19 X7T 18 X7T C20 C16 C 0 1 N N N N N N -11.824 10.806 4.900 -3.276 -3.767 -1.380 C20 X7T 19 X7T C21 C17 C 0 1 N N N N N N -13.377 10.191 3.284 -3.329 -5.693 -0.036 C21 X7T 20 X7T C22 C18 C 0 1 N N N N N N -13.373 9.129 4.352 -2.408 -4.672 0.679 C22 X7T 21 X7T C23 C19 C 0 1 N N N N N N -12.605 12.285 12.674 -6.379 2.974 0.478 C23 X7T 22 X7T C24 C20 C 0 1 N N N N N N -12.722 12.070 14.165 -6.604 4.461 0.578 C24 X7T 23 X7T C6 C21 C 0 1 Y N N N N N -10.186 0.088 7.222 7.724 0.397 -0.014 C6 X7T 24 X7T C7 C22 C 0 1 N N N N N N -12.557 3.934 7.608 3.016 -0.037 0.662 C7 X7T 25 X7T C8 C23 C 0 1 N N N N N N -11.779 5.045 6.912 2.448 -0.395 -0.714 C8 X7T 26 X7T C9 C24 C 0 1 N N N N N N -11.784 6.294 7.768 1.028 0.165 -0.835 C9 X7T 27 X7T F1 F1 F 0 1 N N N N N N -8.084 -0.193 6.204 8.520 2.274 -1.221 F1 X7T 28 X7T F2 F2 F 0 1 N N N N N N -12.296 0.481 8.177 6.898 -1.469 1.188 F2 X7T 29 X7T N1 N1 N 0 1 N N N N N N -13.175 6.729 7.957 0.185 -0.402 0.225 N1 X7T 30 X7T N2 N2 N 0 1 Y N N N N N -13.740 8.099 9.808 -1.460 1.264 -0.000 N2 X7T 31 X7T N3 N3 N 0 1 N N N N N N -13.540 11.643 11.847 -5.349 2.495 -0.248 N3 X7T 32 X7T N4 N4 N 0 1 Y N N N N N -12.897 10.389 8.480 -3.406 -0.600 -0.190 N4 X7T 33 X7T N5 N5 N 0 1 N N N N N N -12.314 9.101 6.572 -1.837 -2.338 0.043 N5 X7T 34 X7T H1 H1 H 0 1 N N N N N N -8.538 1.992 4.939 6.002 2.914 -1.466 H1 X7T 35 X7T H2 H2 H 0 1 N N N N N N -10.600 3.347 5.148 4.114 1.620 -0.561 H2 X7T 36 X7T H3 H3 H 0 1 N N N N N N -15.099 6.107 8.536 0.022 -0.440 2.319 H3 X7T 37 X7T H4 H4 H 0 1 N N N N N N -13.767 5.599 9.629 0.715 1.054 1.643 H4 X7T 38 X7T H5 H5 H 0 1 N N N N N N -14.511 4.480 6.900 2.471 -0.310 2.730 H5 X7T 39 X7T H6 H6 H 0 1 N N N N N N -14.495 3.638 8.487 2.063 -1.685 1.675 H6 X7T 40 X7T H7 H7 H 0 1 N N N N N N -15.299 8.766 11.818 -3.006 3.525 0.799 H7 X7T 41 X7T H8 H8 H 0 1 N N N N N N -13.630 8.877 12.472 -2.224 3.613 -0.794 H8 X7T 42 X7T H9 H9 H 0 1 N N N N N N -15.582 11.111 11.822 -4.650 4.434 -0.691 H9 X7T 43 X7T H10 H10 H 0 1 N N N N N N -14.722 10.768 13.361 -4.302 3.204 -1.935 H10 X7T 44 X7T H11 H11 H 0 1 N N N N N N -12.568 12.385 10.133 -5.472 0.793 -1.469 H11 X7T 45 X7T H12 H12 H 0 1 N N N N N N -14.361 12.332 10.034 -5.776 0.504 0.261 H12 X7T 46 X7T H13 H13 H 0 1 N N N N N N -13.709 10.559 5.925 -3.782 -2.963 0.587 H13 X7T 47 X7T H14 H14 H 0 1 N N N N N N -10.849 10.299 4.938 -2.461 -3.522 -2.060 H14 X7T 48 X7T H15 H15 H 0 1 N N N N N N -11.757 11.769 5.427 -4.187 -3.257 -1.695 H15 X7T 49 X7T H16 H16 H 0 1 N N N N N N -14.296 10.793 3.346 -4.294 -5.749 0.468 H16 X7T 50 X7T H17 H17 H 0 1 N N N N N N -13.306 9.732 2.287 -2.857 -6.675 -0.061 H17 X7T 51 X7T H18 H18 H 0 1 N N N N N N -14.379 8.719 4.522 -1.360 -4.851 0.436 H18 X7T 52 X7T H19 H19 H 0 1 N N N N N N -12.679 8.310 4.110 -2.568 -4.686 1.757 H19 X7T 53 X7T H20 H20 H 0 1 N N N N N N -11.928 12.631 14.680 -5.982 4.869 1.375 H20 X7T 54 X7T H21 H21 H 0 1 N N N N N N -13.705 12.424 14.510 -6.338 4.933 -0.368 H21 X7T 55 X7T H22 H22 H 0 1 N N N N N N -12.619 10.998 14.390 -7.653 4.655 0.799 H22 X7T 56 X7T H23 H23 H 0 1 N N N N N N -10.068 -0.822 7.792 8.738 0.057 0.139 H23 X7T 57 X7T H24 H24 H 0 1 N N N N N N -12.068 3.663 8.556 3.079 1.046 0.761 H24 X7T 58 X7T H25 H25 H 0 1 N N N N N N -10.741 4.718 6.751 3.077 0.038 -1.492 H25 X7T 59 X7T H26 H26 H 0 1 N N N N N N -12.248 5.266 5.942 2.422 -1.479 -0.827 H26 X7T 60 X7T H27 H27 H 0 1 N N N N N N -11.328 6.075 8.745 1.056 1.250 -0.736 H27 X7T 61 X7T H28 H28 H 0 1 N N N N N N -11.212 7.089 7.267 0.615 -0.100 -1.808 H28 X7T 62 X7T H29 H29 H 0 1 N N N N N N -12.419 8.152 6.276 -0.910 -2.618 0.086 H29 X7T 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X7T C21 O2 SING N N 1 X7T C21 C22 SING N N 2 X7T O2 C20 SING N N 3 X7T C22 C19 SING N N 4 X7T C20 C19 SING N N 5 X7T C19 N5 SING N N 6 X7T C2 C3 DOUB Y N 7 X7T C2 C1 SING Y N 8 X7T C3 C4 SING Y N 9 X7T F1 C1 SING N N 10 X7T C1 C6 DOUB Y N 11 X7T N5 C18 SING N N 12 X7T C4 O1 SING N N 13 X7T C4 C5 DOUB Y N 14 X7T O1 C7 SING N N 15 X7T C8 C7 SING N N 16 X7T C8 C9 SING N N 17 X7T C6 C5 SING Y N 18 X7T C5 F2 SING N N 19 X7T C7 C11 SING N N 20 X7T C9 N1 SING N N 21 X7T C11 C10 SING N N 22 X7T C18 N4 DOUB Y N 23 X7T C18 C12 SING Y N 24 X7T N1 C12 SING N N 25 X7T N1 C10 SING N N 26 X7T N4 C17 SING Y N 27 X7T C12 N2 DOUB Y N 28 X7T C17 C16 SING N N 29 X7T C17 C13 DOUB Y N 30 X7T N2 C13 SING Y N 31 X7T C16 N3 SING N N 32 X7T C13 C14 SING N N 33 X7T C14 C15 SING N N 34 X7T N3 C15 SING N N 35 X7T N3 C23 SING N N 36 X7T O3 C23 DOUB N N 37 X7T C23 C24 SING N N 38 X7T C2 H1 SING N N 39 X7T C3 H2 SING N N 40 X7T C10 H3 SING N N 41 X7T C10 H4 SING N N 42 X7T C11 H5 SING N N 43 X7T C11 H6 SING N N 44 X7T C14 H7 SING N N 45 X7T C14 H8 SING N N 46 X7T C15 H9 SING N N 47 X7T C15 H10 SING N N 48 X7T C16 H11 SING N N 49 X7T C16 H12 SING N N 50 X7T C19 H13 SING N N 51 X7T C20 H14 SING N N 52 X7T C20 H15 SING N N 53 X7T C21 H16 SING N N 54 X7T C21 H17 SING N N 55 X7T C22 H18 SING N N 56 X7T C22 H19 SING N N 57 X7T C24 H20 SING N N 58 X7T C24 H21 SING N N 59 X7T C24 H22 SING N N 60 X7T C6 H23 SING N N 61 X7T C7 H24 SING N N 62 X7T C8 H25 SING N N 63 X7T C8 H26 SING N N 64 X7T C9 H27 SING N N 65 X7T C9 H28 SING N N 66 X7T N5 H29 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X7T SMILES ACDLabs 12.01 "Fc1ccc(OC2CCN(CC2)c2nc3CCN(Cc3nc2NC2CCOC2)C(C)=O)c(F)c1" X7T InChI InChI 1.06 "InChI=1S/C24H29F2N5O3/c1-15(32)31-10-6-20-21(13-31)28-23(27-17-7-11-33-14-17)24(29-20)30-8-4-18(5-9-30)34-22-3-2-16(25)12-19(22)26/h2-3,12,17-18H,4-11,13-14H2,1H3,(H,27,28)/t17-/m1/s1" X7T InChIKey InChI 1.06 HSWVJQBEXRKOBZ-QGZVFWFLSA-N X7T SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCc2nc(N3CCC(CC3)Oc4ccc(F)cc4F)c(N[C@@H]5CCOC5)nc2C1" X7T SMILES CACTVS 3.385 "CC(=O)N1CCc2nc(N3CCC(CC3)Oc4ccc(F)cc4F)c(N[CH]5CCOC5)nc2C1" X7T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCc2c(nc(c(n2)N3CCC(CC3)Oc4ccc(cc4F)F)N[C@@H]5CCOC5)C1" X7T SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCc2c(nc(c(n2)N3CCC(CC3)Oc4ccc(cc4F)F)NC5CCOC5)C1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X7T "SYSTEMATIC NAME" ACDLabs 12.01 "1-{2-[4-(2,4-difluorophenoxy)piperidin-1-yl]-3-{[(3R)-oxolan-3-yl]amino}-7,8-dihydropyrido[3,4-b]pyrazin-6(5H)-yl}ethan-1-one" X7T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[2-[4-[2,4-bis(fluoranyl)phenoxy]piperidin-1-yl]-3-[[(3~{R})-oxolan-3-yl]amino]-7,8-dihydro-5~{H}-pyrido[3,4-b]pyrazin-6-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X7T "Create component" 2023-06-05 RCSB X7T "Initial release" 2024-12-04 RCSB #