data_X7X # _chem_comp.id X7X _chem_comp.name "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-05 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X7X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G6M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X7X C11 C1 C 0 1 N N N N N N -11.152 12.299 53.362 4.898 1.956 0.079 C11 X7X 1 X7X C15 C2 C 0 1 Y N N N N N -7.967 10.633 54.268 4.942 -1.738 0.702 C15 X7X 2 X7X C16 C3 C 0 1 Y N N N N N -8.969 13.344 53.978 6.707 0.269 -0.111 C16 X7X 3 X7X C17 C4 C 0 1 Y N N N N N -7.597 13.067 54.340 7.158 -1.051 -0.012 C17 X7X 4 X7X C18 C5 C 0 1 Y N N N N N -7.112 11.700 54.497 6.263 -2.057 0.398 C18 X7X 5 X7X C22 C6 C 0 1 N N N N N N -14.043 8.907 47.912 -2.069 3.355 -0.115 C22 X7X 6 X7X C23 C7 C 0 1 Y N N N N N -13.244 8.443 46.732 -3.062 2.257 -0.067 C23 X7X 7 X7X C25 C8 C 0 1 Y N N N N N -12.692 9.487 45.936 -4.434 2.527 -0.120 C25 X7X 8 X7X C26 C9 C 0 1 Y N N N N N -12.011 9.100 44.820 -5.328 1.477 -0.073 C26 X7X 9 X7X C28 C10 C 0 1 Y N N N N N -12.355 6.800 45.251 -3.621 -0.071 0.073 C28 X7X 10 X7X N1 N1 N 0 1 N N N N N N -11.587 11.670 52.223 3.589 2.199 -0.128 N1 X7X 11 X7X C2 C11 C 0 1 N N N N N N -13.040 11.801 51.810 2.967 3.541 -0.360 C2 X7X 12 X7X C3 C12 C 0 1 N N N N N N -10.777 10.829 51.275 2.500 1.178 -0.175 C3 X7X 13 X7X C4 C13 C 0 1 N N S N N N -11.829 10.782 50.138 1.288 1.940 -0.603 C4 X7X 14 X7X C5 C14 C 0 1 N N S N N N -13.142 10.561 50.963 1.546 3.326 0.114 C5 X7X 15 X7X C6 C15 C 0 1 N N N N N N -14.251 10.284 49.919 0.345 4.067 -0.435 C6 X7X 16 X7X N7 N2 N 0 1 N N N N N N -13.450 9.704 48.835 -0.758 3.072 -0.253 N7 X7X 17 X7X C8 C16 C 0 1 N N N N N N -11.964 9.692 49.118 -0.146 1.709 -0.251 C8 X7X 18 X7X C12 C17 C 0 1 Y N N N N N -9.755 12.213 53.786 5.383 0.565 0.187 C12 X7X 19 X7X O13 O1 O 0 1 N N N N N N -11.951 12.912 54.024 5.681 2.881 0.173 O13 X7X 20 X7X C14 C18 C 0 1 Y N N N N N -9.276 10.888 53.928 4.508 -0.450 0.600 C14 X7X 21 X7X N19 N3 N 0 1 Y N N N N N -5.771 11.779 54.934 6.981 -3.227 0.399 N19 X7X 22 X7X N20 N4 N 0 1 Y N N N N N -5.491 13.099 55.011 8.283 -2.901 -0.007 N20 X7X 23 X7X N21 N5 N 0 1 Y N N N N N -6.522 13.891 54.663 8.357 -1.638 -0.238 N21 X7X 24 X7X O24 O2 O 0 1 N N N N N N -15.217 8.576 48.037 -2.435 4.510 -0.030 O24 X7X 25 X7X N27 N6 N 0 1 Y N N N N N -11.838 7.781 44.443 -4.907 0.231 0.020 N27 X7X 26 X7X C29 C19 C 0 1 Y N N N N N -13.079 7.075 46.411 -2.655 0.925 0.026 C29 X7X 27 X7X C30 C20 C 0 1 N N N N N N -11.383 10.101 43.951 -6.808 1.758 -0.129 C30 X7X 28 X7X C31 C21 C 0 1 N N N N N N -10.121 9.631 43.236 -7.513 2.095 1.186 C31 X7X 29 X7X C32 C22 C 0 1 N N N N N N -11.386 9.927 42.436 -7.265 3.191 0.148 C32 X7X 30 X7X O33 O3 O 0 1 N N N N N N -12.067 5.436 44.993 -3.240 -1.371 0.164 O33 X7X 31 X7X C34 C23 C 0 1 N N N N N N -11.375 5.196 43.794 -4.280 -2.350 0.208 C34 X7X 32 X7X C35 C24 C 0 1 N N N N N N -11.306 3.713 43.636 -3.662 -3.746 0.310 C35 X7X 33 X7X C36 C25 C 0 1 N N N N N N -10.624 3.497 42.248 -4.773 -4.786 0.483 C36 X7X 34 X7X C37 C26 C 0 1 N N N N N N -10.561 1.961 42.039 -4.152 -6.185 0.504 C37 X7X 35 X7X O38 O4 O 0 1 N N N N N N -9.681 1.401 43.060 -3.417 -6.397 -0.703 O38 X7X 36 X7X C39 C27 C 0 1 N N N N N N -10.080 1.593 44.416 -2.335 -5.483 -0.895 C39 X7X 37 X7X C40 C28 C 0 1 N N N N N N -10.429 3.071 44.747 -2.883 -4.055 -0.972 C40 X7X 38 X7X H50 H1 H 0 1 N N N N N N -7.611 9.617 54.355 4.259 -2.513 1.016 H50 X7X 39 X7X H51 H2 H 0 1 N N N N N N -9.352 14.347 53.866 7.382 1.051 -0.424 H51 X7X 40 X7X H53 H3 H 0 1 N N N N N N -12.806 10.528 46.202 -4.789 3.545 -0.196 H53 X7X 41 X7X H41 H4 H 0 1 N N N N N N -13.721 11.771 52.673 3.463 4.306 0.236 H41 X7X 42 X7X H42 H5 H 0 1 N N N N N N -13.225 12.717 51.229 2.987 3.800 -1.419 H42 X7X 43 X7X H44 H6 H 0 1 N N N N N N -9.843 11.321 50.966 2.738 0.402 -0.903 H44 X7X 44 X7X H43 H7 H 0 1 N N N N N N -10.550 9.833 51.682 2.346 0.741 0.811 H43 X7X 45 X7X H10 H8 H 0 1 N N N N N N -11.875 11.765 49.646 1.346 2.110 -1.678 H10 X7X 46 X7X H9 H9 H 0 1 N N N N N N -13.016 9.671 51.597 1.501 3.236 1.199 H9 X7X 47 X7X H45 H10 H 0 1 N N N N N N -14.999 9.572 50.298 0.151 4.971 0.142 H45 X7X 48 X7X H46 H11 H 0 1 N N N N N N -14.754 11.210 49.603 0.485 4.302 -1.491 H46 X7X 49 X7X H48 H12 H 0 1 N N N N N N -11.383 9.919 48.212 -0.624 1.077 -0.999 H48 X7X 50 X7X H47 H13 H 0 1 N N N N N N -11.643 8.722 49.526 -0.227 1.258 0.738 H47 X7X 51 X7X H49 H14 H 0 1 N N N N N N -9.951 10.061 53.766 3.482 -0.209 0.837 H49 X7X 52 X7X H52 H15 H 0 1 N N N N N N -5.157 11.018 55.143 6.652 -4.108 0.636 H52 X7X 53 X7X H54 H16 H 0 1 N N N N N N -13.490 6.290 47.028 -1.605 0.674 0.065 H54 X7X 54 X7X H55 H17 H 0 1 N N N N N N -11.370 11.139 44.315 -7.368 1.185 -0.868 H55 X7X 55 X7X H57 H18 H 0 1 N N N N N N -9.252 10.300 43.158 -8.537 1.743 1.312 H57 X7X 56 X7X H56 H19 H 0 1 N N N N N N -9.776 8.593 43.355 -6.907 2.113 2.092 H56 X7X 57 X7X H59 H20 H 0 1 N N N N N N -11.953 9.103 41.978 -6.496 3.931 0.371 H59 X7X 58 X7X H58 H21 H 0 1 N N N N N N -11.429 10.810 41.781 -8.127 3.561 -0.408 H58 X7X 59 X7X H61 H22 H 0 1 N N N N N N -11.915 5.644 42.947 -4.913 -2.168 1.077 H61 X7X 60 X7X H60 H23 H 0 1 N N N N N N -10.362 5.620 43.848 -4.881 -2.283 -0.699 H60 X7X 61 X7X H62 H24 H 0 1 N N N N N N -12.311 3.267 43.638 -2.989 -3.785 1.166 H62 X7X 62 X7X H64 H25 H 0 1 N N N N N N -11.220 3.967 41.452 -5.298 -4.606 1.421 H64 X7X 63 X7X H63 H26 H 0 1 N N N N N N -9.611 3.925 42.249 -5.475 -4.712 -0.348 H63 X7X 64 X7X H65 H27 H 0 1 N N N N N N -11.568 1.530 42.137 -3.481 -6.272 1.359 H65 X7X 65 X7X H66 H28 H 0 1 N N N N N N -10.162 1.737 41.039 -4.942 -6.932 0.584 H66 X7X 66 X7X H68 H29 H 0 1 N N N N N N -10.967 0.972 44.611 -1.640 -5.561 -0.058 H68 X7X 67 X7X H67 H30 H 0 1 N N N N N N -9.257 1.273 45.072 -1.816 -5.724 -1.822 H67 X7X 68 X7X H70 H31 H 0 1 N N N N N N -9.496 3.646 44.842 -3.547 -3.966 -1.833 H70 X7X 69 X7X H69 H32 H 0 1 N N N N N N -10.979 3.104 45.699 -2.056 -3.353 -1.075 H69 X7X 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X7X N1 C2 SING N N 1 X7X N1 C3 SING N N 2 X7X N1 C11 SING N N 3 X7X C2 C5 SING N N 4 X7X C3 C4 SING N N 5 X7X C4 C5 SING N N 6 X7X C4 C8 SING N N 7 X7X C5 C6 SING N N 8 X7X C6 N7 SING N N 9 X7X N7 C8 SING N N 10 X7X N7 C22 SING N N 11 X7X C11 C12 SING N N 12 X7X C11 O13 DOUB N N 13 X7X C12 C14 DOUB Y N 14 X7X C12 C16 SING Y N 15 X7X C14 C15 SING Y N 16 X7X C15 C18 DOUB Y N 17 X7X C16 C17 DOUB Y N 18 X7X C17 C18 SING Y N 19 X7X C17 N21 SING Y N 20 X7X C18 N19 SING Y N 21 X7X N19 N20 SING Y N 22 X7X N20 N21 DOUB Y N 23 X7X C22 C23 SING N N 24 X7X C22 O24 DOUB N N 25 X7X C23 C25 DOUB Y N 26 X7X C23 C29 SING Y N 27 X7X C25 C26 SING Y N 28 X7X C26 N27 DOUB Y N 29 X7X C26 C30 SING N N 30 X7X N27 C28 SING Y N 31 X7X C28 C29 DOUB Y N 32 X7X C28 O33 SING N N 33 X7X C30 C31 SING N N 34 X7X C30 C32 SING N N 35 X7X C31 C32 SING N N 36 X7X O33 C34 SING N N 37 X7X C34 C35 SING N N 38 X7X C35 C36 SING N N 39 X7X C35 C40 SING N N 40 X7X C36 C37 SING N N 41 X7X C37 O38 SING N N 42 X7X O38 C39 SING N N 43 X7X C39 C40 SING N N 44 X7X C15 H50 SING N N 45 X7X C16 H51 SING N N 46 X7X C25 H53 SING N N 47 X7X C2 H41 SING N N 48 X7X C2 H42 SING N N 49 X7X C3 H44 SING N N 50 X7X C3 H43 SING N N 51 X7X C4 H10 SING N N 52 X7X C5 H9 SING N N 53 X7X C6 H45 SING N N 54 X7X C6 H46 SING N N 55 X7X C8 H48 SING N N 56 X7X C8 H47 SING N N 57 X7X C14 H49 SING N N 58 X7X N19 H52 SING N N 59 X7X C29 H54 SING N N 60 X7X C30 H55 SING N N 61 X7X C31 H57 SING N N 62 X7X C31 H56 SING N N 63 X7X C32 H59 SING N N 64 X7X C32 H58 SING N N 65 X7X C34 H61 SING N N 66 X7X C34 H60 SING N N 67 X7X C35 H62 SING N N 68 X7X C36 H64 SING N N 69 X7X C36 H63 SING N N 70 X7X C37 H65 SING N N 71 X7X C37 H66 SING N N 72 X7X C39 H68 SING N N 73 X7X C39 H67 SING N N 74 X7X C40 H70 SING N N 75 X7X C40 H69 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X7X SMILES ACDLabs 12.01 "O=C(c1ccc2[NH]nnc2c1)N1CC2CN(CC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)C1CC1" X7X InChI InChI 1.06 "InChI=1S/C28H32N6O4/c35-27(19-3-4-23-25(9-19)31-32-30-23)33-12-21-14-34(15-22(21)13-33)28(36)20-10-24(18-1-2-18)29-26(11-20)38-16-17-5-7-37-8-6-17/h3-4,9-11,17-18,21-22H,1-2,5-8,12-16H2,(H,30,31,32)" X7X InChIKey InChI 1.06 YMCWUEVNKWTDOD-UHFFFAOYSA-N X7X SMILES_CANONICAL CACTVS 3.385 "O=C(N1C[C@H]2CN(C[C@@H]2C1)C(=O)c3cc(OCC4CCOCC4)nc(c3)C5CC5)c6ccc7[nH]nnc7c6" X7X SMILES CACTVS 3.385 "O=C(N1C[CH]2CN(C[CH]2C1)C(=O)c3cc(OCC4CCOCC4)nc(c3)C5CC5)c6ccc7[nH]nnc7c6" X7X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@H]4CN(C[C@@H]4C3)C(=O)c5cc(nc(c5)OCC6CCOCC6)C7CC7)nn[nH]2" X7X SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CN(CC4C3)C(=O)c5cc(nc(c5)OCC6CCOCC6)C7CC7)nn[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X7X "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridin-4-yl}methanone" X7X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X7X "Create component" 2023-06-05 RCSB X7X "Initial release" 2024-12-18 RCSB #