data_X83 # _chem_comp.id X83 _chem_comp.name "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6R)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H41 F N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-24 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.604 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X83 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UPV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X83 C5 C1 C 0 1 N N N N N N -19.437 14.562 -21.688 5.272 0.012 0.606 C5 X83 1 X83 C7 C2 C 0 1 N N N N N N -18.663 13.083 -20.034 7.486 -0.238 1.459 C7 X83 2 X83 C10 C3 C 0 1 N N N N N N -21.469 17.355 -21.243 2.171 0.571 -2.690 C10 X83 3 X83 C15 C4 C 0 1 N N R N N N -20.599 14.428 -26.937 0.038 3.545 -0.208 C15 X83 4 X83 C17 C5 C 0 1 N N N N N N -19.004 14.609 -28.748 -1.856 3.298 1.330 C17 X83 5 X83 C20 C6 C 0 1 N N S N N N -19.088 16.336 -26.853 -0.598 1.299 0.475 C20 X83 6 X83 C21 C7 C 0 1 N N N N N N -19.255 17.820 -27.169 -1.403 0.184 -0.141 C21 X83 7 X83 C24 C8 C 0 1 N N N N N N -17.227 20.720 -27.866 -2.790 -2.649 0.323 C24 X83 8 X83 C26 C9 C 0 1 N N R N N N -16.611 21.958 -25.713 -0.822 -4.188 0.281 C26 X83 9 X83 C11 C10 C 0 1 N N N N N N -21.593 18.286 -23.545 2.856 -1.650 -1.774 C11 X83 10 X83 C12 C11 C 0 1 N N N N N N -19.552 18.654 -22.165 4.590 0.065 -2.321 C12 X83 11 X83 C14 C12 C 0 1 N N N N N N -20.923 15.219 -25.677 1.035 2.513 -0.782 C14 X83 12 X83 C16 C13 C 0 1 N N S N N N -19.891 15.460 -27.834 -1.211 2.658 0.090 C16 X83 13 X83 C18 C14 C 0 1 N N N N N N -18.559 13.460 -27.869 -0.793 4.164 2.008 C18 X83 14 X83 C19 C15 C 0 1 N N N N N N -19.556 13.325 -26.712 0.506 3.977 1.200 C19 X83 15 X83 C2 C16 C 0 1 N N N N N N -19.326 16.684 -24.475 1.656 0.259 0.131 C2 X83 16 X83 C23 C17 C 0 1 N N S N N N -18.131 19.614 -28.417 -3.334 -1.303 -0.159 C23 X83 17 X83 C25 C18 C 0 1 N N N N N N -17.674 21.196 -26.477 -1.366 -2.841 -0.201 C25 X83 18 X83 C27 C19 C 0 1 N N N N N N -17.111 22.553 -24.434 0.552 -4.436 -0.343 C27 X83 19 X83 C29 C20 C 0 1 N N R N N N -17.870 19.312 -29.908 -4.799 -1.165 0.259 C29 X83 20 X83 C3 C21 C 0 1 N N S N N N -20.072 16.392 -23.163 3.071 0.402 -0.365 C3 X83 21 X83 C31 C22 C 0 1 N N N N N N -18.287 20.500 -30.773 -5.334 0.162 -0.216 C31 X83 22 X83 C33 C23 C 0 1 N N N N N N -19.807 21.340 -32.481 -5.956 1.703 -1.997 C33 X83 23 X83 C9 C24 C 0 1 N N N N N N -20.660 17.666 -22.505 3.172 -0.153 -1.788 C9 X83 24 X83 F28 F1 F 0 1 N N N N N N -15.562 21.070 -25.413 -0.705 -4.172 1.675 F28 X83 25 X83 N13 N1 N 0 1 N N N N N N -19.774 16.116 -25.587 0.776 1.266 -0.043 N13 X83 26 X83 N22 N2 N 0 1 N N N N N N -18.143 18.483 -27.496 -2.551 -0.218 0.439 N22 X83 27 X83 N32 N3 N 0 1 N N N N N N -19.320 20.305 -31.583 -5.436 0.414 -1.536 N32 X83 28 X83 N4 N4 N 0 1 N N N N N N -19.111 15.652 -22.383 3.975 -0.343 0.515 N4 X83 29 X83 O1 O1 O 0 1 N N N N N N -18.273 17.301 -24.441 1.308 -0.761 0.686 O1 X83 30 X83 O30 O2 O 0 1 N N N N N N -18.678 18.193 -30.246 -4.897 -1.236 1.683 O30 X83 31 X83 O34 O3 O 0 1 N N N N N N -17.655 21.553 -30.732 -5.673 1.002 0.590 O34 X83 32 X83 O35 O4 O 0 1 N N N N N N -20.350 18.365 -27.062 -1.017 -0.352 -1.158 O35 X83 33 X83 O6 O5 O 0 1 N N N N N N -18.413 14.185 -20.925 6.102 -0.673 1.415 O6 X83 34 X83 O8 O6 O 0 1 N N N N N N -20.466 13.935 -21.827 5.693 0.947 -0.045 O8 X83 35 X83 H7C H1 H 0 1 N N N N N N -17.752 12.862 -19.459 7.922 -0.312 0.463 H7C X83 36 X83 H7A H2 H 0 1 N N N N N N -19.478 13.347 -19.344 7.532 0.796 1.801 H7A X83 37 X83 H7B H3 H 0 1 N N N N N N -18.951 12.197 -20.619 8.045 -0.873 2.148 H7B X83 38 X83 H10B H4 H 0 0 N N N N N N -21.861 18.291 -20.819 2.403 1.636 -2.709 H10B X83 39 X83 H10C H5 H 0 0 N N N N N N -22.306 16.689 -21.499 2.234 0.168 -3.700 H10C X83 40 X83 H10A H6 H 0 0 N N N N N N -20.821 16.861 -20.504 1.162 0.426 -2.303 H10A X83 41 X83 H15 H7 H 0 1 N N N N N N -21.508 14.034 -27.416 -0.162 4.381 -0.878 H15 X83 42 X83 H17B H8 H 0 0 N N N N N N -19.575 14.240 -29.613 -2.690 3.920 1.005 H17B X83 43 X83 H17A H9 H 0 0 N N N N N N -18.138 15.188 -29.101 -2.210 2.535 2.024 H17A X83 44 X83 H20 H10 H 0 1 N N N N N N -18.029 16.042 -26.822 -0.587 1.192 1.559 H20 X83 45 X83 H24B H11 H 0 0 N N N N N N -16.199 20.335 -27.795 -2.783 -2.669 1.413 H24B X83 46 X83 H24A H12 H 0 0 N N N N N N -17.251 21.575 -28.558 -3.426 -3.452 -0.050 H24A X83 47 X83 H26 H13 H 0 1 N N N N N N -16.239 22.770 -26.355 -1.506 -4.983 -0.016 H26 X83 48 X83 H11A H14 H 0 0 N N N N N N -22.045 19.201 -23.134 1.847 -1.805 -1.394 H11A X83 49 X83 H11C H15 H 0 0 N N N N N N -21.019 18.535 -24.450 2.928 -2.045 -2.787 H11C X83 50 X83 H11B H16 H 0 0 N N N N N N -22.387 17.568 -23.800 3.570 -2.166 -1.132 H11B X83 51 X83 H12B H17 H 0 0 N N N N N N -19.989 19.550 -21.700 5.303 -0.451 -1.678 H12B X83 52 X83 H12A H18 H 0 0 N N N N N N -18.845 18.185 -21.465 4.661 -0.331 -3.334 H12A X83 53 X83 H12C H19 H 0 0 N N N N N N -19.021 18.941 -23.085 4.814 1.131 -2.330 H12C X83 54 X83 H14B H20 H 0 0 N N N N N N -20.989 14.562 -24.797 0.854 2.365 -1.847 H14B X83 55 X83 H14A H21 H 0 0 N N N N N N -21.862 15.781 -25.787 2.059 2.845 -0.617 H14A X83 56 X83 H16 H22 H 0 1 N N N N N N -20.613 16.057 -28.410 -1.897 2.595 -0.755 H16 X83 57 X83 H18B H23 H 0 0 N N N N N N -18.541 12.529 -28.455 -1.097 5.210 1.990 H18B X83 58 X83 H18A H24 H 0 0 N N N N N N -17.554 13.663 -27.472 -0.644 3.835 3.036 H18A X83 59 X83 H19A H25 H 0 0 N N N N N N -20.034 12.335 -26.730 1.131 3.211 1.658 H19A X83 60 X83 H19B H26 H 0 0 N N N N N N -19.047 13.469 -25.747 1.048 4.920 1.132 H19B X83 61 X83 H23 H27 H 0 1 N N N N N N -19.147 20.035 -28.387 -3.259 -1.248 -1.245 H23 X83 62 X83 H25A H28 H 0 0 N N N N N N -18.548 21.853 -26.601 -1.373 -2.822 -1.290 H25A X83 63 X83 H25B H29 H 0 0 N N N N N N -17.960 20.314 -25.885 -0.730 -2.038 0.173 H25B X83 64 X83 H27A H30 H 0 0 N N N N N N -16.291 23.089 -23.933 0.939 -5.396 0.000 H27A X83 65 X83 H27B H31 H 0 0 N N N N N N -17.929 23.255 -24.652 0.461 -4.449 -1.429 H27B X83 66 X83 H27C H32 H 0 0 N N N N N N -17.480 21.752 -23.777 1.235 -3.641 -0.045 H27C X83 67 X83 H29 H33 H 0 1 N N N N N N -16.802 19.096 -30.060 -5.381 -1.972 -0.186 H29 X83 68 X83 H3 H34 H 0 1 N N N N N N -20.916 15.728 -23.404 3.352 1.456 -0.366 H3 X83 69 X83 H33A H35 H 0 0 N N N N N N -20.665 20.956 -33.052 -6.971 1.840 -1.624 H33A X83 70 X83 H33C H36 H 0 0 N N N N N N -20.119 22.217 -31.895 -5.320 2.506 -1.624 H33C X83 71 X83 H33B H37 H 0 0 N N N N N N -19.005 21.630 -33.175 -5.964 1.723 -3.087 H33B X83 72 X83 H22 H38 H 0 1 N N N N N N -17.277 18.190 -27.090 -2.860 0.211 1.253 H22 X83 73 X83 H32 H39 H 0 1 N N N N N N -19.779 19.417 -31.576 -5.164 -0.258 -2.180 H32 X83 74 X83 H4 H40 H 0 1 N N N N N N -18.163 15.969 -22.363 3.639 -1.092 1.032 H4 X83 75 X83 H30 H41 H 0 1 N N N N N N -18.547 17.972 -31.161 -4.402 -0.546 2.146 H30 X83 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X83 O1 C2 DOUB N N 1 X83 C2 C3 SING N N 2 X83 C3 N4 SING N N 3 X83 N4 C5 SING N N 4 X83 C5 O6 SING N N 5 X83 O6 C7 SING N N 6 X83 C5 O8 DOUB N N 7 X83 C3 C9 SING N N 8 X83 C9 C10 SING N N 9 X83 C9 C11 SING N N 10 X83 C9 C12 SING N N 11 X83 C2 N13 SING N N 12 X83 N13 C14 SING N N 13 X83 C14 C15 SING N N 14 X83 C15 C16 SING N N 15 X83 C16 C17 SING N N 16 X83 C17 C18 SING N N 17 X83 C18 C19 SING N N 18 X83 C16 C20 SING N N 19 X83 C20 C21 SING N N 20 X83 C21 N22 SING N N 21 X83 N22 C23 SING N N 22 X83 C23 C24 SING N N 23 X83 C24 C25 SING N N 24 X83 C25 C26 SING N N 25 X83 C26 C27 SING N N 26 X83 C26 F28 SING N N 27 X83 C23 C29 SING N N 28 X83 C29 O30 SING N N 29 X83 C29 C31 SING N N 30 X83 C31 N32 SING N N 31 X83 N32 C33 SING N N 32 X83 C31 O34 DOUB N N 33 X83 C21 O35 DOUB N N 34 X83 C20 N13 SING N N 35 X83 C19 C15 SING N N 36 X83 C7 H7C SING N N 37 X83 C7 H7A SING N N 38 X83 C7 H7B SING N N 39 X83 C10 H10B SING N N 40 X83 C10 H10C SING N N 41 X83 C10 H10A SING N N 42 X83 C15 H15 SING N N 43 X83 C17 H17B SING N N 44 X83 C17 H17A SING N N 45 X83 C20 H20 SING N N 46 X83 C24 H24B SING N N 47 X83 C24 H24A SING N N 48 X83 C26 H26 SING N N 49 X83 C11 H11A SING N N 50 X83 C11 H11C SING N N 51 X83 C11 H11B SING N N 52 X83 C12 H12B SING N N 53 X83 C12 H12A SING N N 54 X83 C12 H12C SING N N 55 X83 C14 H14B SING N N 56 X83 C14 H14A SING N N 57 X83 C16 H16 SING N N 58 X83 C18 H18B SING N N 59 X83 C18 H18A SING N N 60 X83 C19 H19A SING N N 61 X83 C19 H19B SING N N 62 X83 C23 H23 SING N N 63 X83 C25 H25A SING N N 64 X83 C25 H25B SING N N 65 X83 C27 H27A SING N N 66 X83 C27 H27B SING N N 67 X83 C27 H27C SING N N 68 X83 C29 H29 SING N N 69 X83 C3 H3 SING N N 70 X83 C33 H33A SING N N 71 X83 C33 H33C SING N N 72 X83 C33 H33B SING N N 73 X83 N22 H22 SING N N 74 X83 N32 H32 SING N N 75 X83 N4 H4 SING N N 76 X83 O30 H30 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X83 SMILES ACDLabs 12.01 "CNC(=O)C(O)C(CCC(C)F)NC(=O)C1C2CCCC2CN1C(=O)C(NC(=O)OC)C(C)(C)C" X83 InChI InChI 1.06 "InChI=1S/C24H41FN4O6/c1-13(25)10-11-16(18(30)21(32)26-5)27-20(31)17-15-9-7-8-14(15)12-29(17)22(33)19(24(2,3)4)28-23(34)35-6/h13-19,30H,7-12H2,1-6H3,(H,26,32)(H,27,31)(H,28,34)/t13-,14+,15+,16+,17+,18-,19-/m1/s1" X83 InChIKey InChI 1.06 RMJXELKXXMTVDO-JXBLTTDBSA-N X83 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](CC[C@@H](C)F)NC(=O)[C@@H]1[C@H]2CCC[C@H]2CN1C(=O)[C@@H](NC(=O)OC)C(C)(C)C" X83 SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](CC[CH](C)F)NC(=O)[CH]1[CH]2CCC[CH]2CN1C(=O)[CH](NC(=O)OC)C(C)(C)C" X83 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CC[C@@H]([C@H](C(=O)NC)O)NC(=O)[C@@H]1[C@H]2CCC[C@H]2CN1C(=O)[C@H](C(C)(C)C)NC(=O)OC)F" X83 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCC(C(C(=O)NC)O)NC(=O)C1C2CCCC2CN1C(=O)C(C(C)(C)C)NC(=O)OC)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X83 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6R)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate (non-preferred name)" X83 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl ~{N}-[(2~{S})-1-[(3~{S},3~{a}~{S},6~{a}~{R})-3-[[(2~{R},3~{S},6~{R})-6-fluoranyl-1-(methylamino)-2-oxidanyl-1-oxidanylidene-heptan-3-yl]carbamoyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X83 "Create component" 2023-10-24 RCSB X83 "Initial release" 2024-03-06 RCSB #