data_X8B # _chem_comp.id X8B _chem_comp.name "(3E,4E)-4-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-3-iminocyclopent-1-ene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H15 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-Amino-4-fluorocyclopentenecarboxylic Acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-06 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.252 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X8B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EZ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X8B C10 C1 C 0 1 N N N 34.231 18.822 -5.553 -1.795 -0.676 0.944 C10 X8B 1 X8B C11 C2 C 0 1 N N N 35.187 18.914 -6.766 -2.580 -1.771 1.542 C11 X8B 2 X8B C12 C3 C 0 1 N N N 35.867 20.257 -6.796 -3.755 -2.009 0.685 C12 X8B 3 X8B C13 C4 C 0 1 N N N 35.478 20.991 -5.530 -3.763 -1.177 -0.363 C13 X8B 4 X8B C14 C5 C 0 1 N N N 34.311 20.212 -4.905 -2.557 -0.273 -0.300 C14 X8B 5 X8B N15 N1 N 0 1 N N N 35.266 18.081 -7.688 -2.286 -2.418 2.640 N15 X8B 6 X8B C01 C6 C 0 1 Y N N 31.321 18.164 -2.065 -0.212 3.326 0.022 C01 X8B 7 X8B C03 C7 C 0 1 Y N N 30.329 16.691 -3.528 1.726 2.140 -0.390 C03 X8B 8 X8B C04 C8 C 0 1 Y N N 31.393 16.801 -4.382 1.224 1.007 0.213 C04 X8B 9 X8B C05 C9 C 0 1 Y N N 32.494 17.610 -4.090 -0.069 1.040 0.755 C05 X8B 10 X8B C06 C10 C 0 1 Y N N 32.464 18.307 -2.880 -0.798 2.238 0.651 C06 X8B 11 X8B C07 C11 C 0 1 N N N 31.184 18.894 -0.724 -0.978 4.618 -0.098 C07 X8B 12 X8B C09 C12 C 0 1 N N N 33.668 17.704 -5.091 -0.648 -0.145 1.408 C09 X8B 13 X8B C16 C13 C 0 1 N N N 31.357 15.979 -5.662 2.054 -0.249 0.292 C16 X8B 14 X8B C22 C14 C 0 1 N N N 36.020 22.324 -4.992 -4.790 -1.146 -1.413 C22 X8B 15 X8B N02 N2 N 0 1 Y N N 30.318 17.374 -2.387 1.009 3.245 -0.467 N02 X8B 16 X8B O08 O1 O 0 1 N N N 33.534 19.121 -2.510 -2.054 2.329 1.159 O08 X8B 17 X8B O17 O2 O 0 1 N N N 32.344 15.013 -5.457 3.320 -0.022 -0.329 O17 X8B 18 X8B O19 O3 O 0 1 N N N 33.634 13.072 -6.273 4.978 -1.524 1.053 O19 X8B 19 X8B O20 O4 O 0 1 N N N 33.787 15.306 -7.584 3.908 -2.361 -1.074 O20 X8B 20 X8B O21 O5 O 0 1 N N N 31.817 13.770 -7.580 5.696 -0.594 -1.299 O21 X8B 21 X8B O23 O6 O 0 1 N N N 36.030 22.476 -3.729 -4.694 -0.262 -2.426 O23 X8B 22 X8B O24 O7 O 0 1 N N N 36.451 23.239 -5.769 -5.728 -1.919 -1.368 O24 X8B 23 X8B P18 P1 P 0 1 N N N 32.948 14.247 -6.759 4.463 -1.152 -0.427 P18 X8B 24 X8B H2 H2 H 0 1 N N N 36.514 20.629 -7.577 -4.511 -2.756 0.877 H2 X8B 25 X8B H5 H5 H 0 1 N N N 33.370 20.755 -5.080 -2.871 0.768 -0.226 H5 X8B 26 X8B H6 H6 H 0 1 N N N 34.477 20.105 -3.823 -1.936 -0.416 -1.184 H6 X8B 27 X8B H7 H7 H 0 1 N N N 34.628 17.321 -7.562 -1.486 -2.189 3.138 H7 X8B 28 X8B H8 H8 H 0 1 N N N 29.498 16.049 -3.781 2.723 2.123 -0.806 H8 X8B 29 X8B H9 H9 H 0 1 N N N 30.231 18.615 -0.250 -0.777 5.242 0.772 H9 X8B 30 X8B H10 H10 H 0 1 N N N 32.018 18.610 -0.065 -0.666 5.143 -1.001 H10 X8B 31 X8B H11 H11 H 0 1 N N N 31.205 19.981 -0.894 -2.045 4.404 -0.153 H11 X8B 32 X8B H12 H12 H 0 1 N N N 34.073 16.771 -5.453 -0.153 -0.589 2.259 H12 X8B 33 X8B H14 H14 H 0 1 N N N 31.593 16.603 -6.537 2.205 -0.519 1.338 H14 X8B 34 X8B H15 H15 H 0 1 N N N 30.371 15.511 -5.801 1.537 -1.059 -0.221 H15 X8B 35 X8B H16 H16 H 0 1 N N N 33.353 19.518 -1.666 -2.089 2.665 2.065 H16 X8B 36 X8B H17 H17 H 0 1 N N N 34.547 13.106 -6.535 5.356 -0.778 1.537 H17 X8B 37 X8B H18 H18 H 0 1 N N N 31.836 14.201 -8.426 6.423 -1.224 -1.400 H18 X8B 38 X8B H19 H19 H 0 1 N N N 36.390 23.329 -3.515 -5.394 -0.279 -3.092 H19 X8B 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X8B N15 C11 DOUB N N 1 X8B O20 P18 DOUB N N 2 X8B O21 P18 SING N N 3 X8B C12 C11 SING N N 4 X8B C12 C13 DOUB N N 5 X8B C11 C10 SING N N 6 X8B P18 O19 SING N N 7 X8B P18 O17 SING N N 8 X8B O24 C22 DOUB N N 9 X8B C16 O17 SING N N 10 X8B C16 C04 SING N N 11 X8B C10 C09 DOUB N E 12 X8B C10 C14 SING N N 13 X8B C13 C22 SING N N 14 X8B C13 C14 SING N N 15 X8B C09 C05 SING N N 16 X8B C22 O23 SING N N 17 X8B C04 C05 SING Y N 18 X8B C04 C03 DOUB Y N 19 X8B C05 C06 DOUB Y N 20 X8B C03 N02 SING Y N 21 X8B C06 O08 SING N N 22 X8B C06 C01 SING Y N 23 X8B N02 C01 DOUB Y N 24 X8B C01 C07 SING N N 25 X8B C12 H2 SING N N 26 X8B C14 H5 SING N N 27 X8B C14 H6 SING N N 28 X8B N15 H7 SING N N 29 X8B C03 H8 SING N N 30 X8B C07 H9 SING N N 31 X8B C07 H10 SING N N 32 X8B C07 H11 SING N N 33 X8B C09 H12 SING N N 34 X8B C16 H14 SING N N 35 X8B C16 H15 SING N N 36 X8B O08 H16 SING N N 37 X8B O19 H17 SING N N 38 X8B O21 H18 SING N N 39 X8B O23 H19 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X8B SMILES ACDLabs 12.01 "Oc1c(\C=C2/CC(=CC2=N)C(=O)O)c(cnc1C)COP(=O)(O)O" X8B InChI InChI 1.06 "InChI=1S/C14H15N2O7P/c1-7-13(17)11(10(5-16-7)6-23-24(20,21)22)3-8-2-9(14(18)19)4-12(8)15/h3-5,15,17H,2,6H2,1H3,(H,18,19)(H2,20,21,22)/b8-3+,15-12+" X8B InChIKey InChI 1.06 NSAJRPMHFRLIPA-LEGHTLSWSA-N X8B SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(/C=C/2CC(=CC/2=N)C(O)=O)c1O" X8B SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=C2CC(=CC2=N)C(O)=O)c1O" X8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]\N=C\1/C=C(C/C1=C\c2c(cnc(c2O)C)COP(=O)(O)O)C(=O)O" X8B SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=C2CC(=CC2=N)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X8B "SYSTEMATIC NAME" ACDLabs 12.01 "(3E,4E)-4-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-3-iminocyclopent-1-ene-1-carboxylic acid" X8B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{E})-3-azanylidene-4-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene]cyclopentene-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X8B "Create component" 2022-11-06 RCSB X8B "Initial release" 2023-02-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X8B _pdbx_chem_comp_synonyms.name "3-Amino-4-fluorocyclopentenecarboxylic Acid" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #