data_X8F # _chem_comp.id X8F _chem_comp.name "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6S)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H41 F N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-24 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.604 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X8F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UPW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X8F C5 C1 C 0 1 N N N N N N -19.594 14.506 -21.845 5.304 -0.024 0.645 C5 X8F 1 X8F C7 C2 C 0 1 N N N N N N -18.790 12.850 -20.414 7.517 -0.259 1.506 C7 X8F 2 X8F C10 C3 C 0 1 N N N N N N -21.741 17.361 -21.464 2.197 0.352 -2.672 C10 X8F 3 X8F C15 C4 C 0 1 N N R N N N -20.907 14.409 -27.138 0.147 3.556 -0.417 C15 X8F 4 X8F C17 C5 C 0 1 N N N N N N -19.248 14.552 -28.908 -1.743 3.471 1.143 C17 X8F 5 X8F C20 C6 C 0 1 N N S N N N -19.283 16.265 -26.997 -0.536 1.385 0.438 C20 X8F 6 X8F C21 C7 C 0 1 N N N N N N -19.432 17.744 -27.354 -1.369 0.244 -0.087 C21 X8F 7 X8F C24 C8 C 0 1 N N N N N N -17.388 20.615 -27.791 -2.818 -2.512 0.599 C24 X8F 8 X8F C26 C9 C 0 1 N N S N N N -16.950 21.409 -25.397 -0.886 -4.095 0.668 C26 X8F 9 X8F C11 C10 C 0 1 N N N N N N -21.783 18.237 -23.800 2.838 -1.808 -1.591 C11 X8F 10 X8F C12 C11 C 0 1 N N N N N N -19.810 18.659 -22.365 4.606 -0.180 -2.275 C12 X8F 11 X8F C14 C12 C 0 1 N N N N N N -21.118 15.138 -25.815 1.117 2.460 -0.914 C14 X8F 12 X8F C16 C13 C 0 1 N N S N N N -20.102 15.418 -27.984 -1.120 2.723 -0.047 C16 X8F 13 X8F C18 C14 C 0 1 N N N N N N -18.862 13.383 -28.040 -0.657 4.362 1.748 C18 X8F 14 X8F C19 C15 C 0 1 N N N N N N -20.034 13.147 -27.065 0.632 4.084 0.951 C19 X8F 15 X8F C2 C16 C 0 1 N N N N N N -19.494 16.595 -24.608 1.692 0.270 0.166 C2 X8F 16 X8F C23 C17 C 0 1 N N S N N N -18.295 19.603 -28.494 -3.333 -1.194 0.017 C23 X8F 17 X8F C25 C18 C 0 1 N N N N N N -17.920 20.771 -26.358 -1.401 -2.777 0.086 C25 X8F 18 X8F C27 C19 C 0 1 N N N N N N -16.625 22.833 -25.732 0.574 -4.298 0.256 C27 X8F 19 X8F C29 C20 C 0 1 N N R N N N -18.019 19.463 -30.009 -4.793 -0.991 0.429 C29 X8F 20 X8F C3 C21 C 0 1 N N S N N N -20.245 16.350 -23.298 3.108 0.341 -0.345 C3 X8F 21 X8F C31 C22 C 0 1 N N N N N N -18.417 20.710 -30.797 -5.300 0.307 -0.144 C31 X8F 22 X8F C33 C23 C 0 1 N N N N N N -19.904 21.683 -32.470 -5.897 1.721 -2.036 C33 X8F 23 X8F C9 C24 C 0 1 N N N N N N -20.890 17.641 -22.707 3.187 -0.324 -1.721 C9 X8F 24 X8F F28 F1 F 0 1 N N N N N N -15.748 20.667 -25.415 -1.660 -5.154 0.181 F28 X8F 25 X8F N13 N1 N 0 1 N N N N N N -19.948 16.019 -25.724 0.834 1.280 -0.081 N13 X8F 26 X8F N22 N2 N 0 1 N N N N N N -18.311 18.370 -27.718 -2.523 -0.086 0.527 N22 X8F 27 X8F N32 N3 N 0 1 N N N N N N -19.429 20.577 -31.654 -5.404 0.460 -1.479 N32 X8F 28 X8F N4 N4 N 0 1 N N N N N N -19.285 15.641 -22.476 3.999 -0.355 0.586 N4 X8F 29 X8F O1 O1 O 0 1 N N N N N N -18.425 17.193 -24.588 1.324 -0.697 0.799 O1 X8F 30 X8F O30 O2 O 0 1 N N N N N N -18.787 18.358 -30.465 -4.884 -0.951 1.855 O30 X8F 31 X8F O34 O3 O 0 1 N N N N N N -17.819 21.769 -30.621 -5.616 1.214 0.596 O34 X8F 32 X8F O35 O4 O 0 1 N N N N N N -20.477 18.344 -27.120 -1.002 -0.377 -1.061 O35 X8F 33 X8F O6 O5 O 0 1 N N N N N N -18.586 14.114 -21.074 6.123 -0.663 1.501 O6 X8F 34 X8F O8 O6 O 0 1 N N N N N N -20.578 13.843 -22.062 5.742 0.849 -0.078 O8 X8F 35 X8F H7A H1 H 0 1 N N N N N N -17.909 12.609 -19.802 7.945 -0.418 0.516 H7A X8F 36 X8F H7B H2 H 0 1 N N N N N N -19.679 12.913 -19.769 7.588 0.797 1.766 H7B X8F 37 X8F H7C H3 H 0 1 N N N N N N -18.939 12.063 -21.168 8.065 -0.851 2.238 H7C X8F 38 X8F H10B H4 H 0 0 N N N N N N -22.169 18.304 -21.092 2.453 1.406 -2.774 H10B X8F 39 X8F H10C H5 H 0 0 N N N N N N -22.554 16.667 -21.725 2.246 -0.130 -3.649 H10C X8F 40 X8F H10A H6 H 0 0 N N N N N N -21.111 16.911 -20.683 1.188 0.260 -2.271 H10A X8F 41 X8F H15 H7 H 0 1 N N N N N N -21.871 14.186 -27.618 -0.038 4.343 -1.149 H15 X8F 42 X8F H17B H8 H 0 0 N N N N N N -19.828 14.218 -29.781 -2.564 4.086 0.775 H17B X8F 43 X8F H17A H9 H 0 0 N N N N N N -18.357 15.100 -29.248 -2.111 2.772 1.894 H17A X8F 44 X8F H20 H10 H 0 1 N N N N N N -18.227 15.958 -26.987 -0.521 1.361 1.528 H20 X8F 45 X8F H24B H11 H 0 0 N N N N N N -16.352 20.245 -27.772 -2.804 -2.448 1.687 H24B X8F 46 X8F H24A H12 H 0 0 N N N N N N -17.423 21.582 -28.315 -3.474 -3.326 0.291 H24A X8F 47 X8F H26 H13 H 0 1 N N N N N N -17.389 21.379 -24.389 -0.956 -4.064 1.755 H26 X8F 48 X8F H11A H14 H 0 0 N N N N N N -22.260 19.154 -23.425 1.828 -1.910 -1.196 H11A X8F 49 X8F H11C H15 H 0 0 N N N N N N -21.172 18.477 -24.682 2.895 -2.282 -2.571 H11C X8F 50 X8F H11B H16 H 0 0 N N N N N N -22.558 17.508 -24.078 3.544 -2.289 -0.914 H11B X8F 51 X8F H12B H17 H 0 0 N N N N N N -20.277 19.564 -21.949 5.311 -0.661 -1.598 H12B X8F 52 X8F H12A H18 H 0 0 N N N N N N -19.122 18.228 -21.623 4.663 -0.654 -3.255 H12A X8F 53 X8F H12C H19 H 0 0 N N N N N N -19.251 18.920 -23.276 4.855 0.877 -2.368 H12C X8F 54 X8F H14B H20 H 0 0 N N N N N N -21.144 14.429 -24.974 0.926 2.235 -1.964 H14B X8F 55 X8F H14A H21 H 0 0 N N N N N N -22.050 15.722 -25.831 2.150 2.781 -0.779 H14A X8F 56 X8F H16 H22 H 0 1 N N N N N N -20.781 16.056 -28.569 -1.812 2.612 -0.882 H16 X8F 57 X8F H18B H23 H 0 0 N N N N N N -18.699 12.489 -28.659 -0.938 5.411 1.651 H18B X8F 58 X8F H18A H24 H 0 0 N N N N N N -17.944 13.614 -27.480 -0.509 4.110 2.798 H18A X8F 59 X8F H19A H25 H 0 0 N N N N N N -20.613 12.263 -27.371 1.243 3.341 1.464 H19A X8F 60 X8F H19B H26 H 0 0 N N N N N N -19.657 13.002 -26.042 1.196 5.006 0.809 H19B X8F 61 X8F H23 H27 H 0 1 N N N N N N -19.309 20.022 -28.423 -3.264 -1.225 -1.070 H23 X8F 62 X8F H25A H28 H 0 0 N N N N N N -18.827 21.393 -26.394 -1.415 -2.841 -1.002 H25A X8F 63 X8F H25B H29 H 0 0 N N N N N N -18.175 19.772 -25.976 -0.745 -1.963 0.394 H25B X8F 64 X8F H27B H30 H 0 0 N N N N N N -15.915 23.232 -24.992 0.643 -4.329 -0.831 H27B X8F 65 X8F H27C H31 H 0 0 N N N N N N -16.174 22.880 -26.734 1.176 -3.473 0.635 H27C X8F 66 X8F H27A H32 H 0 0 N N N N N N -17.547 23.433 -25.716 0.941 -5.237 0.670 H27A X8F 67 X8F H29 H33 H 0 1 N N N N N N -16.946 19.273 -30.157 -5.396 -1.816 0.050 H29 X8F 68 X8F H3 H34 H 0 1 N N N N N N -21.071 15.661 -23.525 3.412 1.385 -0.428 H3 X8F 69 X8F H33C H35 H 0 0 N N N N N N -20.741 21.343 -33.098 -6.907 1.910 -1.670 H33C X8F 70 X8F H33B H36 H 0 0 N N N N N N -20.244 22.501 -31.817 -5.241 2.536 -1.728 H33B X8F 71 X8F H33A H37 H 0 0 N N N N N N -19.086 22.042 -33.112 -5.911 1.658 -3.124 H33A X8F 72 X8F H22 H38 H 0 1 N N N N N N -17.436 17.972 -27.444 -2.817 0.412 1.307 H22 X8F 73 X8F H32 H39 H 0 1 N N N N N N -19.877 19.687 -31.739 -5.152 -0.266 -2.071 H32 X8F 74 X8F H4 H40 H 0 1 N N N N N N -18.362 16.014 -22.378 3.649 -1.054 1.160 H4 X8F 75 X8F H30 H41 H 0 1 N N N N N N -18.646 18.236 -31.397 -4.371 -0.239 2.262 H30 X8F 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X8F O1 C2 DOUB N N 1 X8F C2 C3 SING N N 2 X8F C3 N4 SING N N 3 X8F N4 C5 SING N N 4 X8F C5 O6 SING N N 5 X8F O6 C7 SING N N 6 X8F C5 O8 DOUB N N 7 X8F C3 C9 SING N N 8 X8F C9 C10 SING N N 9 X8F C9 C11 SING N N 10 X8F C9 C12 SING N N 11 X8F C2 N13 SING N N 12 X8F N13 C14 SING N N 13 X8F C14 C15 SING N N 14 X8F C15 C16 SING N N 15 X8F C16 C17 SING N N 16 X8F C17 C18 SING N N 17 X8F C18 C19 SING N N 18 X8F C16 C20 SING N N 19 X8F C20 C21 SING N N 20 X8F C21 N22 SING N N 21 X8F N22 C23 SING N N 22 X8F C23 C24 SING N N 23 X8F C24 C25 SING N N 24 X8F C25 C26 SING N N 25 X8F C26 C27 SING N N 26 X8F C26 F28 SING N N 27 X8F C23 C29 SING N N 28 X8F C29 O30 SING N N 29 X8F C29 C31 SING N N 30 X8F C31 N32 SING N N 31 X8F N32 C33 SING N N 32 X8F C31 O34 DOUB N N 33 X8F C21 O35 DOUB N N 34 X8F C20 N13 SING N N 35 X8F C19 C15 SING N N 36 X8F C7 H7A SING N N 37 X8F C7 H7B SING N N 38 X8F C7 H7C SING N N 39 X8F C10 H10B SING N N 40 X8F C10 H10C SING N N 41 X8F C10 H10A SING N N 42 X8F C15 H15 SING N N 43 X8F C17 H17B SING N N 44 X8F C17 H17A SING N N 45 X8F C20 H20 SING N N 46 X8F C24 H24B SING N N 47 X8F C24 H24A SING N N 48 X8F C26 H26 SING N N 49 X8F C11 H11A SING N N 50 X8F C11 H11C SING N N 51 X8F C11 H11B SING N N 52 X8F C12 H12B SING N N 53 X8F C12 H12A SING N N 54 X8F C12 H12C SING N N 55 X8F C14 H14B SING N N 56 X8F C14 H14A SING N N 57 X8F C16 H16 SING N N 58 X8F C18 H18B SING N N 59 X8F C18 H18A SING N N 60 X8F C19 H19A SING N N 61 X8F C19 H19B SING N N 62 X8F C23 H23 SING N N 63 X8F C25 H25A SING N N 64 X8F C25 H25B SING N N 65 X8F C27 H27B SING N N 66 X8F C27 H27C SING N N 67 X8F C27 H27A SING N N 68 X8F C29 H29 SING N N 69 X8F C3 H3 SING N N 70 X8F C33 H33C SING N N 71 X8F C33 H33B SING N N 72 X8F C33 H33A SING N N 73 X8F N22 H22 SING N N 74 X8F N32 H32 SING N N 75 X8F N4 H4 SING N N 76 X8F O30 H30 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X8F SMILES ACDLabs 12.01 "CNC(=O)C(O)C(CCC(C)F)NC(=O)C1C2CCCC2CN1C(=O)C(NC(=O)OC)C(C)(C)C" X8F InChI InChI 1.06 "InChI=1S/C24H41FN4O6/c1-13(25)10-11-16(18(30)21(32)26-5)27-20(31)17-15-9-7-8-14(15)12-29(17)22(33)19(24(2,3)4)28-23(34)35-6/h13-19,30H,7-12H2,1-6H3,(H,26,32)(H,27,31)(H,28,34)/t13-,14-,15-,16-,17-,18+,19+/m0/s1" X8F InChIKey InChI 1.06 RMJXELKXXMTVDO-UYYZUGKPSA-N X8F SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](CC[C@H](C)F)NC(=O)[C@@H]1[C@H]2CCC[C@H]2CN1C(=O)[C@@H](NC(=O)OC)C(C)(C)C" X8F SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](CC[CH](C)F)NC(=O)[CH]1[CH]2CCC[CH]2CN1C(=O)[CH](NC(=O)OC)C(C)(C)C" X8F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CC[C@@H]([C@H](C(=O)NC)O)NC(=O)[C@@H]1[C@H]2CCC[C@H]2CN1C(=O)[C@H](C(C)(C)C)NC(=O)OC)F" X8F SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCC(C(C(=O)NC)O)NC(=O)C1C2CCCC2CN1C(=O)C(C(C)(C)C)NC(=O)OC)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X8F "SYSTEMATIC NAME" ACDLabs 12.01 "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6S)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate (non-preferred name)" X8F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl ~{N}-[(2~{S})-1-[(3~{S},3~{a}~{S},6~{a}~{R})-3-[[(2~{R},3~{S},6~{S})-6-fluoranyl-1-(methylamino)-2-oxidanyl-1-oxidanylidene-heptan-3-yl]carbamoyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X8F "Create component" 2023-10-24 RCSB X8F "Initial release" 2024-03-06 RCSB X8F "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X8F _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C29 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #