data_X8L # _chem_comp.id X8L _chem_comp.name L-gulono-1,4-lactone _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H10 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3S,4R,5R)-5-[(1S)-1,2-bis(oxidanyl)ethyl]-3,4-bis(oxidanyl)oxolan-2-one; L-gulonolactone" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-25 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.140 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X8L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QNR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X8L C1 C1 C 0 1 N N N N N N 9.071 8.439 26.331 1.655 -1.120 -0.032 C1 X8L 1 X8L C2 C2 C 0 1 N N R N N N 10.103 9.976 27.696 -0.255 -0.241 0.840 C2 X8L 2 X8L C3 C3 C 0 1 N N S N N N 9.637 10.933 28.757 -1.604 0.287 0.346 C3 X8L 3 X8L C4 C4 C 0 1 N N N N N N 10.556 12.047 29.168 -2.552 -0.888 0.099 C4 X8L 4 X8L C5 C5 C 0 1 N N R N N N 10.270 10.508 26.270 0.767 0.911 0.942 C5 X8L 5 X8L C6 C6 C 0 1 N N S N N N 10.042 9.231 25.475 2.049 0.295 0.340 C6 X8L 6 X8L O1 O1 O 0 1 N N N N N N 8.355 7.535 26.005 2.412 -2.046 -0.204 O1 X8L 7 X8L O2 O2 O 0 1 N N N N N N 9.102 8.913 27.584 0.314 -1.167 -0.134 O2 X8L 8 X8L O3 O3 O 0 1 N N N N N N 8.853 10.382 29.782 -1.415 1.011 -0.872 O3 X8L 9 X8L O4 O4 O 0 1 N N N N N N 10.803 11.983 30.567 -3.845 -0.391 -0.250 O4 X8L 10 X8L O5 O5 O 0 1 N N N N N N 9.342 11.499 25.863 0.336 2.038 0.176 O5 X8L 11 X8L O6 O6 O 0 1 N N N N N N 9.442 9.414 24.218 2.453 1.022 -0.822 O6 X8L 12 X8L H1 H1 H 0 1 N N N N N N 11.060 9.537 28.015 -0.372 -0.730 1.807 H1 X8L 13 X8L H2 H2 H 0 1 N N N N N N 8.881 11.499 28.194 -2.033 0.948 1.099 H2 X8L 14 X8L H4 H3 H 0 1 N N N N N N 11.508 11.953 28.625 -2.167 -1.501 -0.716 H4 X8L 15 X8L H5 H4 H 0 1 N N N N N N 10.089 13.013 28.924 -2.626 -1.491 1.004 H5 X8L 16 X8L H7 H5 H 0 1 N N N N N N 11.305 10.852 26.126 0.927 1.193 1.983 H7 X8L 17 X8L H9 H6 H 0 1 N N N N N N 10.990 8.679 25.387 2.849 0.284 1.080 H9 X8L 18 X8L H3 H7 H 0 1 N N N N N N 8.611 11.064 30.398 -1.035 0.484 -1.588 H3 X8L 19 X8L H6 H8 H 0 1 N N N N N N 11.385 12.691 30.819 -4.500 -1.082 -0.421 H6 X8L 20 X8L H8 H9 H 0 1 N N N N N N 9.488 12.294 26.362 0.944 2.790 0.207 H8 X8L 21 X8L H10 H10 H 0 1 N N N N N N 8.694 8.834 24.136 3.254 0.678 -1.242 H10 X8L 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X8L O6 C6 SING N N 1 X8L C6 C5 SING N N 2 X8L C6 C1 SING N N 3 X8L O5 C5 SING N N 4 X8L O1 C1 DOUB N N 5 X8L C5 C2 SING N N 6 X8L C1 O2 SING N N 7 X8L O2 C2 SING N N 8 X8L C2 C3 SING N N 9 X8L C3 C4 SING N N 10 X8L C3 O3 SING N N 11 X8L C4 O4 SING N N 12 X8L C2 H1 SING N N 13 X8L C3 H2 SING N N 14 X8L C4 H4 SING N N 15 X8L C4 H5 SING N N 16 X8L C5 H7 SING N N 17 X8L C6 H9 SING N N 18 X8L O3 H3 SING N N 19 X8L O4 H6 SING N N 20 X8L O5 H8 SING N N 21 X8L O6 H10 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X8L InChI InChI 1.06 "InChI=1S/C6H10O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2-5,7-10H,1H2/t2-,3+,4-,5+/m0/s1" X8L InChIKey InChI 1.06 SXZYCXMUPBBULW-SKNVOMKLSA-N X8L SMILES_CANONICAL CACTVS 3.385 "OC[C@H](O)[C@H]1OC(=O)[C@@H](O)[C@H]1O" X8L SMILES CACTVS 3.385 "OC[CH](O)[CH]1OC(=O)[CH](O)[CH]1O" X8L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]([C@@H]1[C@@H]([C@@H](C(=O)O1)O)O)O)O" X8L SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C1C(C(C(=O)O1)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id X8L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},4~{R},5~{R})-5-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4-bis(oxidanyl)oxolan-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X8L "Create component" 2023-10-25 PDBE X8L "Initial release" 2024-05-01 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 X8L "(3S,4R,5R)-5-[(1S)-1,2-bis(oxidanyl)ethyl]-3,4-bis(oxidanyl)oxolan-2-one" PDB ? 2 X8L L-gulonolactone PUBCHEM ? #